Wall clock time and date at job start Tue Mar 31 2020 10:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50700 * 109.47092 * 239.99574 * 2 1 3 5 5 H 1.08002 * 119.99770 * 239.99893 * 4 2 1 6 6 C 1.37876 * 119.99720 * 60.00211 * 4 2 1 7 7 N 1.31514 * 120.00513 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99651 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47265 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.46830 * 120.00397 * 8 6 4 11 11 H 1.48503 * 109.47108 * 240.00004 * 8 6 4 12 12 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 13 13 N 1.46499 * 109.47198 * 299.99984 * 12 2 1 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 2 15 15 O 1.21553 * 120.00289 * 359.72074 * 14 13 12 16 16 C 1.47846 * 119.99557 * 179.72375 * 14 13 12 17 17 C 1.40026 * 120.55315 * 179.97438 * 16 14 13 18 18 C 1.38359 * 118.28180 * 179.97438 * 17 16 14 19 19 C 1.38348 * 119.30816 * 0.02562 * 18 17 16 20 20 C 1.50698 * 119.46273 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.47244 * 179.97438 * 20 19 18 22 22 F 1.39899 * 109.47071 * 299.99996 * 20 19 18 23 23 F 1.39896 * 109.46924 * 60.00207 * 20 19 18 24 24 N 1.31934 * 121.07800 * 359.97438 * 19 18 17 25 25 C 1.31692 * 121.87762 * 359.77075 * 24 19 18 26 26 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 27 27 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 28 28 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 31 31 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 32 32 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 33 33 H 1.09009 * 109.46730 * 179.97438 * 12 2 1 34 34 H 1.08998 * 109.46846 * 60.00315 * 12 2 1 35 35 H 0.97001 * 119.99790 * 359.97438 * 13 12 2 36 36 H 1.07991 * 120.85932 * 359.97438 * 17 16 14 37 37 H 1.07996 * 120.34498 * 179.97438 * 18 17 16 38 38 H 1.09007 * 109.46933 * 60.00084 * 21 20 19 39 39 H 1.09003 * 109.47537 * 180.02562 * 21 20 19 40 40 H 1.08999 * 109.47390 * 300.00689 * 21 20 19 41 41 H 1.08002 * 119.71777 * 180.24066 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1198 -4.0079 9 1 3.1473 -2.2866 -3.6037 10 1 1.1678 -1.5868 -4.8164 11 1 3.1473 -0.1861 -4.8161 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8818 -0.4877 3.6695 15 8 2.5806 -1.4760 3.7812 16 6 1.3940 0.2129 4.8766 17 6 1.7295 -0.2522 6.1540 18 6 1.2479 0.4397 7.2511 19 6 0.4575 1.5578 7.0530 20 6 -0.0695 2.3137 8.2454 21 6 -0.9088 3.5001 7.7670 22 9 -0.8632 1.4637 9.0229 23 9 1.0031 2.7812 9.0123 24 7 0.1575 1.9730 5.8372 25 6 0.5958 1.3514 4.7621 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 0.7090 1.1613 -3.4845 33 1 3.1300 -0.7216 1.2491 34 1 1.6766 -1.7488 1.2493 35 1 0.9942 0.7584 2.3564 36 1 2.3482 -1.1284 6.2797 37 1 1.4857 0.1100 8.2516 38 1 -1.7446 3.1362 7.1691 39 1 -1.2896 4.0472 8.6294 40 1 -0.2901 4.1622 7.1613 41 1 0.3319 1.7240 3.7833 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458038607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:19 Heat of formation + Delta-G solvation = -105.937271 kcal Electronic energy + Delta-G solvation = -25560.395552 eV Core-core repulsion = 21496.994136 eV Total energy + Delta-G solvation = -4063.401416 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.139 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.39342 -47.37444 -40.86556 -39.06061 -36.50368 -33.80080 -33.46717 -32.54011 -31.13750 -30.23175 -26.36353 -25.81193 -25.43223 -24.47469 -24.12946 -22.11334 -20.62500 -19.03456 -18.45663 -17.91270 -17.79681 -17.10476 -16.21706 -15.87745 -15.27391 -15.14003 -14.94551 -14.83598 -14.40787 -14.22056 -13.95591 -13.71700 -13.62780 -13.30760 -12.99091 -12.88954 -12.88771 -12.74849 -12.46205 -12.28057 -11.57554 -11.48841 -11.28432 -10.94738 -10.72264 -10.48103 -10.34196 -10.27937 -10.21282 -9.72932 -9.70724 -9.64130 -9.39085 -8.86436 -8.61310 -8.42224 -6.08403 -4.18716 0.16774 0.82437 2.71792 2.90723 3.23514 3.32147 3.34437 3.41221 3.55471 3.66575 3.87966 4.27985 4.34893 4.40303 4.47833 4.61721 4.77181 4.86183 5.15853 5.18798 5.21057 5.36896 5.56291 5.68019 5.73712 6.06013 6.11948 6.20859 6.40585 6.62259 6.72459 6.81124 6.85277 6.92678 7.26129 7.31199 7.47386 7.62801 7.80422 7.93223 8.05704 8.29085 8.41222 8.81971 9.47707 10.93117 Molecular weight = 312.14amu Principal moments of inertia in cm(-1) A = 0.031094 B = 0.002639 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.268220 B =10606.754696 C =11145.984461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.055 3.945 3 C -0.132 4.132 4 C -0.507 4.507 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.130 3.870 13 N -0.705 5.705 14 C 0.549 3.451 15 O -0.540 6.540 16 C -0.155 4.155 17 C -0.019 4.019 18 C -0.141 4.141 19 C 0.071 3.929 20 C 0.347 3.653 21 C -0.176 4.176 22 F -0.189 7.189 23 F -0.189 7.189 24 N -0.455 5.455 25 C 0.135 3.865 26 H 0.005 0.995 27 H 0.087 0.913 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.087 0.913 31 H 0.005 0.995 32 H 0.260 0.740 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.398 0.602 36 H 0.156 0.844 37 H 0.147 0.853 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.363 4.855 18.947 19.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 C -0.190 4.190 4 C -0.545 4.545 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.008 3.992 13 N -0.355 5.355 14 C 0.334 3.666 15 O -0.419 6.419 16 C -0.160 4.160 17 C -0.045 4.045 18 C -0.161 4.161 19 C -0.067 4.067 20 C 0.310 3.690 21 C -0.233 4.233 22 F -0.170 7.170 23 F -0.170 7.170 24 N -0.163 5.163 25 C -0.024 4.024 26 H 0.024 0.976 27 H 0.106 0.894 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.106 0.894 31 H 0.024 0.976 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.234 0.766 36 H 0.174 0.826 37 H 0.164 0.836 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.114 0.886 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.463 4.989 18.776 19.734 hybrid contribution 0.637 -0.899 -0.680 1.295 sum -2.826 4.090 18.096 18.767 Atomic orbital electron populations 1.21848 0.97663 0.99309 1.00145 1.18382 0.92866 0.92804 0.90477 1.21851 0.98713 0.98264 1.00147 1.20999 1.31582 1.12173 0.89788 0.92309 1.24877 0.94800 0.94897 0.98895 1.69801 1.36622 1.22706 1.23236 0.86509 0.78668 0.79752 0.82930 1.19746 1.21032 1.21026 1.21844 0.98441 0.95953 0.82937 1.46289 1.51779 1.31597 1.05858 1.17964 0.81148 0.84389 0.83148 1.90770 1.38303 1.26103 1.86700 1.21393 1.00888 0.98108 0.95626 1.21777 0.94423 0.98134 0.90192 1.21895 0.97782 0.95459 1.00946 1.21449 0.97296 0.94806 0.93186 1.19246 0.80049 0.88236 0.81473 1.22575 1.01433 0.95994 1.03344 1.93062 1.74122 1.73054 1.76751 1.93061 1.57688 1.88941 1.77299 1.67279 1.20796 1.30596 0.97636 1.23066 0.91556 0.90444 0.97382 0.97590 0.89438 0.95307 0.95305 0.89434 0.97589 0.92978 0.92239 0.92235 0.76556 0.82615 0.83558 0.88627 0.90163 0.88629 0.81251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 8.08 37.16 0.30 -2.52 16 2 C 0.06 1.22 0.50 -155.66 -0.08 1.14 16 3 C -0.13 -2.83 8.08 37.16 0.30 -2.53 16 4 C -0.51 -12.81 8.01 -34.44 -0.28 -13.09 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.89 -22.90 9.35 55.43 0.52 -22.38 16 8 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.13 2.60 4.50 -4.04 -0.02 2.58 16 13 N -0.70 -11.62 4.91 -61.25 -0.30 -11.93 16 14 C 0.55 8.94 7.78 -12.33 -0.10 8.85 16 15 O -0.54 -10.53 16.42 5.32 0.09 -10.44 16 16 C -0.15 -2.02 5.89 -104.82 -0.62 -2.64 16 17 C -0.02 -0.22 9.72 -38.87 -0.38 -0.59 16 18 C -0.14 -1.46 9.60 -39.50 -0.38 -1.84 16 19 C 0.07 0.78 6.18 -82.51 -0.51 0.27 16 20 C 0.35 3.42 2.27 -27.89 -0.06 3.35 16 21 C -0.18 -1.37 8.59 37.16 0.32 -1.05 16 22 F -0.19 -1.98 16.97 2.25 0.04 -1.94 16 23 F -0.19 -1.98 16.97 2.25 0.04 -1.94 16 24 N -0.45 -5.22 8.97 -9.14 -0.08 -5.31 16 25 C 0.13 1.56 10.71 -17.13 -0.18 1.38 16 26 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 27 H 0.09 2.09 6.07 -51.93 -0.32 1.78 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 2.09 6.07 -51.93 -0.32 1.78 16 31 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 32 H 0.26 6.50 8.31 -40.82 -0.34 6.17 16 33 H 0.06 1.25 8.14 -51.92 -0.42 0.82 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.40 5.78 4.23 -40.82 -0.17 5.61 16 36 H 0.16 1.67 7.74 -52.49 -0.41 1.26 16 37 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 38 H 0.09 0.73 8.05 -51.93 -0.42 0.31 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.73 8.05 -51.93 -0.42 0.31 16 41 H 0.17 1.67 6.42 -52.49 -0.34 1.34 16 LS Contribution 344.69 15.07 5.19 5.19 Total: -1.00 -28.01 344.69 -6.47 -34.48 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.17 Total: 4.12 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -1.77 Total: -5.06 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.14 Total: -39.61 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.08 Total: -3.89 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.01 -6.47 -34.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458038607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.454 kcal (2) G-P(sol) polarization free energy of solvation -28.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds