Wall clock time and date at job start Tue Mar 31 2020 10:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47137 * 2 1 4 4 C 1.53002 * 109.47137 * 179.97438 * 3 2 1 5 5 N 1.46892 * 109.47332 * 179.97438 * 4 3 2 6 6 C 1.46908 * 111.00268 * 66.04522 * 5 4 3 7 7 C 1.50697 * 109.47444 * 193.95581 * 6 5 4 8 8 H 1.07996 * 120.00004 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99680 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00447 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99662 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47374 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47215 * 120.00297 * 11 9 7 14 14 H 1.48506 * 109.47042 * 240.00259 * 11 9 7 15 15 C 1.46904 * 111.00430 * 189.99999 * 5 4 3 16 16 C 1.50696 * 109.47161 * 170.00036 * 15 5 4 17 17 C 1.38165 * 120.45893 * 269.71772 * 16 15 5 18 18 Cl 1.73594 * 119.60694 * 0.25820 * 17 16 15 19 19 N 1.32038 * 120.78789 * 180.25477 * 17 16 15 20 20 C 1.31997 * 121.84712 * 0.05109 * 19 17 16 21 21 C 1.37922 * 120.83850 * 359.94818 * 20 19 17 22 22 C 1.39185 * 120.46095 * 90.00455 * 16 15 5 23 23 O 1.35740 * 120.83623 * 359.69573 * 22 16 15 24 24 C 1.42896 * 116.99806 * 180.02562 * 23 22 16 25 25 H 1.09003 * 109.47351 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46975 * 299.99775 * 1 2 3 27 27 H 1.09002 * 109.47048 * 59.99700 * 1 2 3 28 28 H 1.09001 * 109.46921 * 239.99682 * 2 1 3 29 29 H 1.09002 * 109.47048 * 120.00300 * 2 1 3 30 30 H 1.09003 * 109.47005 * 60.00243 * 3 2 1 31 31 H 1.09002 * 109.47396 * 300.00086 * 3 2 1 32 32 H 1.09001 * 109.46921 * 59.99682 * 4 3 2 33 33 H 1.09002 * 109.47048 * 300.00300 * 4 3 2 34 34 H 1.09003 * 109.46599 * 313.96068 * 6 5 4 35 35 H 1.09001 * 109.46735 * 73.94874 * 6 5 4 36 36 H 0.96996 * 120.00462 * 180.02562 * 10 9 7 37 37 H 1.08998 * 109.46745 * 49.99918 * 15 5 4 38 38 H 1.08998 * 109.46818 * 290.00042 * 15 5 4 39 39 H 1.08004 * 119.58365 * 179.97438 * 20 19 17 40 40 H 1.08000 * 120.43826 * 179.97438 * 21 20 19 41 41 H 1.08999 * 109.47407 * 60.00256 * 24 23 22 42 42 H 1.09005 * 109.46941 * 180.02562 * 24 23 22 43 43 H 1.08996 * 109.47268 * 300.00085 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8274 0.0000 6 6 3.7097 3.5101 1.2528 7 6 3.9134 4.9944 1.0899 8 1 4.2677 5.3908 0.1499 9 6 3.6472 5.8461 2.1409 10 7 3.2161 5.3633 3.2857 11 14 3.9003 7.6859 1.9392 12 1 4.3883 7.9708 0.5660 13 1 2.6121 8.3902 2.1623 14 1 4.9012 8.1593 2.9289 15 6 5.5087 2.8734 -0.2375 16 6 5.9336 4.2995 -0.4755 17 6 5.9496 4.8214 -1.7547 18 17 5.4697 3.8257 -3.0932 19 7 6.3256 6.0684 -1.9712 20 6 6.6999 6.8639 -0.9867 21 6 6.7111 6.4170 0.3181 22 6 6.3211 5.1074 0.5896 23 8 6.3185 4.6314 1.8608 24 6 6.7311 5.5313 2.8913 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.9337 0.9284 -0.8891 33 1 3.9330 0.9287 0.8909 34 1 2.6659 3.3110 1.4957 35 1 4.3465 3.1421 2.0573 36 1 3.0286 5.9626 4.0250 37 1 5.7527 2.2707 -1.1123 38 1 6.0323 2.4787 0.6332 39 1 7.0009 7.8779 -1.2055 40 1 7.0190 7.0733 1.1186 41 1 6.0709 6.3986 2.9020 42 1 6.6830 5.0258 3.8558 43 1 7.7543 5.8559 2.7021 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232155708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:01 Heat of formation + Delta-G solvation = 3.681652 kcal Electronic energy + Delta-G solvation = -25603.676640 eV Core-core repulsion = 22096.825338 eV Total energy + Delta-G solvation = -3506.851302 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.135 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.32145 -37.52916 -37.11285 -35.92208 -34.41165 -32.63545 -31.52216 -30.43814 -28.38005 -27.54746 -26.75610 -24.77396 -22.96576 -22.23599 -21.93923 -20.59535 -19.70425 -17.75794 -16.80689 -16.70772 -15.47086 -15.03650 -14.98879 -14.73460 -14.41809 -14.31472 -13.87477 -13.64552 -13.53181 -13.43009 -12.90355 -12.49197 -12.40026 -12.08284 -11.90829 -11.56302 -11.40917 -11.15226 -10.99561 -10.94465 -10.81206 -10.74399 -10.56404 -10.49315 -10.37101 -10.22426 -9.92651 -9.74286 -9.34041 -9.04314 -8.50602 -8.27881 -7.63010 -7.19816 -6.12750 -4.02190 1.57963 2.03994 2.42266 3.09265 3.25682 3.33443 3.95428 4.25147 4.31869 4.94708 5.09023 5.24432 5.29787 5.33321 5.42686 5.46519 5.51422 5.55696 5.62764 5.78424 5.81590 5.94498 5.96377 6.05910 6.06254 6.15298 6.17099 6.23334 6.31459 6.33408 6.41704 6.53317 6.67696 6.75548 6.87220 6.96213 7.28463 7.42829 7.74030 7.96140 8.08844 8.20469 8.41384 8.55494 8.96660 9.50322 10.96893 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.011395 B = 0.007049 C = 0.005176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.569506 B = 3971.504849 C = 5408.574615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.115 4.115 4 C 0.061 3.939 5 N -0.531 5.531 6 C 0.190 3.810 7 C -0.482 4.482 8 H 0.070 0.930 9 C 0.065 3.935 10 N -0.882 5.882 11 Si 0.857 3.143 12 H -0.259 1.259 13 H -0.285 1.285 14 H -0.282 1.282 15 C 0.117 3.883 16 C -0.126 4.126 17 C 0.208 3.792 18 Cl -0.041 7.041 19 N -0.527 5.527 20 C 0.151 3.849 21 C -0.296 4.296 22 C 0.268 3.732 23 O -0.271 6.271 24 C 0.033 3.967 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.020 0.980 34 H 0.033 0.967 35 H 0.001 0.999 36 H 0.259 0.741 37 H 0.070 0.930 38 H 0.038 0.962 39 H 0.151 0.849 40 H 0.130 0.870 41 H 0.057 0.943 42 H 0.094 0.906 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.085 -4.362 -3.722 7.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.153 4.153 4 C -0.067 4.067 5 N -0.255 5.255 6 C 0.065 3.935 7 C -0.520 4.520 8 H 0.088 0.912 9 C -0.137 4.137 10 N -0.522 5.522 11 Si 0.684 3.316 12 H -0.183 1.183 13 H -0.211 1.211 14 H -0.209 1.209 15 C -0.011 4.011 16 C -0.131 4.131 17 C 0.048 3.952 18 Cl -0.013 7.013 19 N -0.243 5.243 20 C -0.007 4.007 21 C -0.318 4.318 22 C 0.212 3.788 23 O -0.179 6.179 24 C -0.062 4.062 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.038 0.962 34 H 0.051 0.949 35 H 0.019 0.981 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.056 0.944 39 H 0.169 0.831 40 H 0.147 0.853 41 H 0.076 0.924 42 H 0.113 0.887 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.691 -4.080 -4.777 7.840 hybrid contribution 0.272 0.825 1.661 1.875 sum 4.963 -3.255 -3.116 6.703 Atomic orbital electron populations 1.21752 0.96260 1.00792 1.01929 1.21491 0.95538 0.97663 1.01254 1.21609 0.95148 0.95315 1.03192 1.21965 0.95318 0.90488 0.98957 1.62171 1.10572 1.13043 1.39742 1.19838 0.96321 0.93290 0.84032 1.21552 1.41050 0.91537 0.97864 0.91245 1.24816 0.95929 0.97477 0.95437 1.69958 1.45139 1.34397 1.02702 0.87160 0.78173 0.87217 0.79016 1.18282 1.21116 1.20882 1.20585 0.89952 0.90882 0.99725 1.19455 1.04900 0.98897 0.89819 1.20830 0.97870 0.89990 0.86559 1.98337 1.89885 1.66640 1.46400 1.66910 1.16954 1.03780 1.36636 1.22014 0.93510 0.97834 0.87356 1.21954 1.13755 0.96694 0.99367 1.18386 0.85048 0.90315 0.85045 1.86262 1.80085 1.39429 1.12129 1.22996 0.97510 0.95410 0.90265 0.93406 0.92728 0.92860 0.92569 0.92544 0.91238 0.91539 0.92404 0.96168 0.94932 0.98114 0.93148 0.91219 0.94429 0.83126 0.85254 0.92435 0.88737 0.94151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.47 16 2 C -0.12 -1.63 5.93 -26.73 -0.16 -1.79 16 3 C -0.11 -1.92 5.17 -26.73 -0.14 -2.05 16 4 C 0.06 1.08 4.96 -3.83 -0.02 1.06 16 5 N -0.53 -11.07 4.56 -237.51 -1.08 -12.15 16 6 C 0.19 4.62 4.20 -4.97 -0.02 4.60 16 7 C -0.48 -12.33 4.91 -34.44 -0.17 -12.49 16 8 H 0.07 1.85 4.71 -52.49 -0.25 1.61 16 9 C 0.07 1.68 4.06 -17.82 -0.07 1.61 16 10 N -0.88 -23.85 13.29 55.43 0.74 -23.11 16 11 Si 0.86 20.08 25.57 -169.99 -4.35 15.74 16 12 H -0.26 -6.06 6.87 56.52 0.39 -5.67 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.28 -6.23 6.74 56.52 0.38 -5.85 16 15 C 0.12 2.28 4.57 -4.98 -0.02 2.26 16 16 C -0.13 -2.57 3.47 -104.30 -0.36 -2.94 16 17 C 0.21 4.17 7.07 -17.49 -0.12 4.05 16 18 Cl -0.04 -0.73 27.45 -51.86 -1.42 -2.15 16 19 N -0.53 -10.50 10.34 -10.43 -0.11 -10.61 16 20 C 0.15 2.74 11.17 -17.60 -0.20 2.54 16 21 C -0.30 -5.53 6.93 -39.30 -0.27 -5.80 16 22 C 0.27 5.46 3.65 -38.83 -0.14 5.32 16 23 O -0.27 -5.60 6.86 -18.93 -0.13 -5.73 16 24 C 0.03 0.59 9.31 101.05 0.94 1.53 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.32 6.31 -51.93 -0.33 0.99 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 0.92 7.93 -51.93 -0.41 0.51 16 33 H 0.02 0.36 8.12 -51.93 -0.42 -0.06 16 34 H 0.03 0.86 5.98 -51.93 -0.31 0.55 16 35 H 0.00 0.03 7.34 -51.93 -0.38 -0.35 16 36 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 37 H 0.07 1.22 6.70 -51.93 -0.35 0.87 16 38 H 0.04 0.75 7.49 -51.93 -0.39 0.36 16 39 H 0.15 2.20 8.06 -52.48 -0.42 1.78 16 40 H 0.13 2.17 6.45 -52.49 -0.34 1.83 16 41 H 0.06 1.12 4.14 -51.93 -0.21 0.91 16 42 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 43 H 0.04 0.57 7.71 -51.93 -0.40 0.17 16 LS Contribution 340.35 15.07 5.13 5.13 Total: -1.00 -28.00 340.35 -7.96 -35.96 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.34 Total: 0.51 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -0.39 Total: -3.59 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: -0.46 Total: -45.87 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.13 Total: -5.73 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.35 Total: 15.74 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.42 Total: -2.15 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.00 -7.96 -35.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232155708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.641 kcal (2) G-P(sol) polarization free energy of solvation -28.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds