Wall clock time and date at job start Tue Mar 31 2020 10:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47235 * 59.99855 * 9 7 5 11 11 H 1.48500 * 109.47168 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47142 * 299.99797 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 N 1.46499 * 109.46992 * 179.97438 * 15 13 3 17 17 C 1.46504 * 120.00381 * 269.99655 * 16 15 13 18 18 C 1.39818 * 119.99997 * 90.00072 * 16 15 13 19 19 C 1.38891 * 120.04353 * 180.02562 * 18 16 15 20 20 C 1.38133 * 119.99880 * 179.97438 * 19 18 16 21 21 C 1.38414 * 120.07257 * 359.97438 * 20 19 18 22 22 F 1.35103 * 119.96201 * 179.97438 * 21 20 19 23 23 C 1.38664 * 120.07950 * 0.02562 * 21 20 19 24 24 F 1.35098 * 120.00069 * 180.02562 * 23 21 20 25 25 C 1.38334 * 120.00223 * 359.74087 * 23 21 20 26 26 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 27 27 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 29 29 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 30 30 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 31 31 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 32 32 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 33 33 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 35 35 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 36 36 H 1.09000 * 109.46899 * 89.99956 * 17 16 15 37 37 H 1.08992 * 109.47334 * 209.99920 * 17 16 15 38 38 H 1.08994 * 109.46680 * 330.00544 * 17 16 15 39 39 H 1.08005 * 120.00155 * 359.97438 * 19 18 16 40 40 H 1.08000 * 119.96359 * 179.97438 * 20 19 18 41 41 H 1.07994 * 120.03818 * 180.28315 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 6.1403 0.6387 -3.5947 11 1 6.1604 2.7947 -4.7040 12 1 6.8411 2.6188 -2.3829 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3100 2.2033 3.5858 17 6 3.6650 2.2291 4.1422 18 6 1.3200 3.0352 4.1176 19 6 1.6204 3.8868 5.1730 20 6 0.6418 4.7086 5.6973 21 6 -0.6385 4.6851 5.1719 22 9 -1.5941 5.4895 5.6868 23 6 -0.9419 3.8362 4.1183 24 9 -2.1919 3.8149 3.6063 25 6 0.0369 3.0153 3.5875 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.5818 1.6876 -2.0283 32 1 2.0956 3.1410 -1.1384 33 1 3.6747 3.5148 -4.4447 34 1 0.9443 1.0114 2.5302 35 1 2.6227 0.4186 2.5299 36 1 4.2612 2.9720 3.6124 37 1 3.6185 2.4877 5.2000 38 1 4.1233 1.2468 4.0281 39 1 2.6191 3.9063 5.5836 40 1 0.8759 5.3702 6.5182 41 1 -0.1975 2.3572 2.7639 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065594708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:42 Heat of formation + Delta-G solvation = -82.956106 kcal Electronic energy + Delta-G solvation = -26191.238080 eV Core-core repulsion = 22128.833202 eV Total energy + Delta-G solvation = -4062.404877 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.139 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.32114 -48.38251 -39.97558 -38.71173 -35.95017 -35.18232 -32.85968 -31.17999 -30.20030 -29.87519 -28.82209 -26.92589 -25.12810 -23.28347 -23.03977 -22.49524 -21.22761 -18.63090 -18.23500 -17.21300 -17.00674 -16.76586 -16.40345 -16.15684 -16.14029 -15.42298 -14.83571 -14.82210 -14.50299 -14.40949 -14.27621 -14.03023 -13.75149 -13.43447 -12.98990 -12.82621 -12.64742 -12.44239 -12.26432 -12.15508 -12.05857 -11.83645 -11.57458 -11.25423 -11.07275 -10.97653 -10.78683 -10.57445 -10.17774 -9.99670 -9.70114 -9.05523 -8.92950 -8.47208 -7.73681 -7.36286 -6.07975 -4.13310 1.00713 1.17642 2.83046 3.26867 3.28401 3.33143 3.36214 3.45678 3.87016 3.97867 4.40258 4.42147 4.52819 4.81267 4.91534 4.96497 5.03108 5.16391 5.22130 5.26532 5.34298 5.40128 5.44025 5.54884 5.67666 5.76607 5.78772 5.85664 5.94103 5.95155 6.05942 6.16287 6.40971 6.65597 6.91796 7.07827 7.25066 7.40180 7.48320 7.87670 8.18913 8.34219 8.84619 9.01248 9.51803 11.00069 Molecular weight = 312.14amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.003548 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.139822 B = 7889.056482 C = 8203.933402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.596 5.596 4 C 0.247 3.753 5 C -0.528 4.528 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.481 3.519 14 O -0.526 6.526 15 C 0.098 3.902 16 N -0.601 5.601 17 C 0.092 3.908 18 C 0.253 3.747 19 C -0.181 4.181 20 C -0.074 4.074 21 C -0.005 4.005 22 F -0.140 7.140 23 C 0.121 3.879 24 F -0.130 7.130 25 C -0.208 4.208 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.032 0.968 32 H 0.042 0.958 33 H 0.264 0.736 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.959 -5.600 17.900 19.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.020 4.020 3 N -0.329 5.329 4 C 0.128 3.872 5 C -0.567 4.567 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.265 3.735 14 O -0.402 6.402 15 C -0.029 4.029 16 N -0.308 5.308 17 C -0.050 4.050 18 C 0.148 3.852 19 C -0.203 4.203 20 C -0.094 4.094 21 C -0.027 4.027 22 F -0.119 7.119 23 C 0.100 3.900 24 F -0.108 7.108 25 C -0.231 4.231 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.157 0.843 40 H 0.160 0.840 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.657 -4.980 17.621 18.894 hybrid contribution 0.592 -0.063 -0.676 0.901 sum -4.065 -5.043 16.945 18.141 Atomic orbital electron populations 1.22240 0.96686 1.01580 1.02373 1.21446 0.93574 0.84213 1.02736 1.48317 1.63685 1.13202 1.07738 1.19261 0.96246 0.93618 0.78056 1.21368 0.96889 1.32107 1.06306 0.92612 1.24934 0.97827 0.94895 0.96393 1.69922 1.35727 1.33287 1.14305 0.86566 0.84777 0.78234 0.77869 1.20249 1.21141 1.20237 1.20917 0.79501 0.87599 0.85494 1.90694 1.44903 1.17740 1.86881 1.21589 1.03185 0.92704 0.85463 1.46076 1.08981 1.41678 1.34079 1.21754 0.82065 1.02699 0.98513 1.17471 0.87512 0.89189 0.91028 1.20557 1.00505 0.99749 0.99496 1.20728 0.90170 0.98778 0.99721 1.17344 0.87988 0.97984 0.99431 1.91469 1.62761 1.71520 1.86103 1.17298 0.80468 0.98003 0.94249 1.91513 1.37959 1.95438 1.85925 1.20440 0.91892 1.05532 1.05271 0.91848 0.91971 0.93264 0.89718 0.91887 0.95009 0.93989 0.92617 0.88277 0.87897 0.92167 0.91079 0.91191 0.84315 0.83964 0.84188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.24 37.16 0.38 -1.72 16 2 C 0.10 1.52 5.93 -4.05 -0.02 1.50 16 3 N -0.60 -11.84 2.46 -175.06 -0.43 -12.27 16 4 C 0.25 6.31 5.16 -5.19 -0.03 6.28 16 5 C -0.53 -14.62 9.39 -34.44 -0.32 -14.95 16 6 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 9 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 13 C 0.48 9.30 7.74 -10.98 -0.09 9.21 16 14 O -0.53 -12.78 16.01 5.56 0.09 -12.69 16 15 C 0.10 1.29 4.23 -5.19 -0.02 1.27 16 16 N -0.60 -7.82 2.50 -180.98 -0.45 -8.27 16 17 C 0.09 0.97 10.23 59.85 0.61 1.58 16 18 C 0.25 3.37 6.55 -83.75 -0.55 2.82 16 19 C -0.18 -2.04 9.21 -39.38 -0.36 -2.40 16 20 C -0.07 -0.83 10.02 -39.56 -0.40 -1.23 16 21 C -0.01 -0.07 7.30 -39.36 -0.29 -0.36 16 22 F -0.14 -1.98 17.18 2.25 0.04 -1.94 16 23 C 0.12 1.75 7.30 -39.39 -0.29 1.46 16 24 F -0.13 -1.98 17.18 2.25 0.04 -1.94 16 25 C -0.21 -2.93 9.18 -39.32 -0.36 -3.29 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.57 7.22 -51.93 -0.38 0.19 16 29 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 30 H 0.06 0.71 6.44 -51.93 -0.33 0.38 16 31 H 0.03 0.82 8.07 -51.93 -0.42 0.41 16 32 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.10 1.12 5.25 -51.93 -0.27 0.85 16 35 H 0.10 1.10 7.15 -51.93 -0.37 0.73 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.55 6.20 -51.93 -0.32 0.23 16 38 H 0.07 0.61 7.89 -51.93 -0.41 0.20 16 39 H 0.14 1.23 6.14 -52.48 -0.32 0.91 16 40 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.14 1.92 6.15 -52.49 -0.32 1.59 16 LS Contribution 352.02 15.07 5.30 5.30 Total: -1.00 -33.91 352.02 -6.71 -40.63 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -5.19 Total: -1.50 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -1.83 Total: 1.81 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: -0.15 Total: -46.17 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.09 Total: -12.69 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.08 Total: -3.88 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.91 -6.71 -40.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065594708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.327 kcal (2) G-P(sol) polarization free energy of solvation -33.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds