Wall clock time and date at job start Tue Mar 31 2020 10:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47235 * 59.99855 * 9 7 5 11 11 H 1.48500 * 109.47168 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47142 * 299.99797 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 N 1.46499 * 109.46992 * 179.97438 * 15 13 3 17 17 C 1.46504 * 120.00381 * 269.99655 * 16 15 13 18 18 C 1.39818 * 119.99997 * 90.00072 * 16 15 13 19 19 C 1.38891 * 120.04353 * 180.02562 * 18 16 15 20 20 C 1.38133 * 119.99880 * 179.97438 * 19 18 16 21 21 C 1.38414 * 120.07257 * 359.97438 * 20 19 18 22 22 F 1.35103 * 119.96201 * 179.97438 * 21 20 19 23 23 C 1.38664 * 120.07950 * 0.02562 * 21 20 19 24 24 F 1.35098 * 120.00069 * 180.02562 * 23 21 20 25 25 C 1.38334 * 120.00223 * 359.74087 * 23 21 20 26 26 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 27 27 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 29 29 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 30 30 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 31 31 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 32 32 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 33 33 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 35 35 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 36 36 H 1.09000 * 109.46899 * 89.99956 * 17 16 15 37 37 H 1.08992 * 109.47334 * 209.99920 * 17 16 15 38 38 H 1.08994 * 109.46680 * 330.00544 * 17 16 15 39 39 H 1.08005 * 120.00155 * 359.97438 * 19 18 16 40 40 H 1.08000 * 119.96359 * 179.97438 * 20 19 18 41 41 H 1.07994 * 120.03818 * 180.28315 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 6.1403 0.6387 -3.5947 11 1 6.1604 2.7947 -4.7040 12 1 6.8411 2.6188 -2.3829 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3100 2.2033 3.5858 17 6 3.6650 2.2291 4.1422 18 6 1.3200 3.0352 4.1176 19 6 1.6204 3.8868 5.1730 20 6 0.6418 4.7086 5.6973 21 6 -0.6385 4.6851 5.1719 22 9 -1.5941 5.4895 5.6868 23 6 -0.9419 3.8362 4.1183 24 9 -2.1919 3.8149 3.6063 25 6 0.0369 3.0153 3.5875 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.5818 1.6876 -2.0283 32 1 2.0956 3.1410 -1.1384 33 1 3.6747 3.5148 -4.4447 34 1 0.9443 1.0114 2.5302 35 1 2.6227 0.4186 2.5299 36 1 4.2612 2.9720 3.6124 37 1 3.6185 2.4877 5.2000 38 1 4.1233 1.2468 4.0281 39 1 2.6191 3.9063 5.5836 40 1 0.8759 5.3702 6.5182 41 1 -0.1975 2.3572 2.7639 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065594708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:42 Heat of formation + Delta-G solvation = -103.454576 kcal Electronic energy + Delta-G solvation = -26192.126960 eV Core-core repulsion = 22128.833202 eV Total energy + Delta-G solvation = -4063.293758 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.139 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.42168 -49.47616 -41.18278 -39.99505 -37.16845 -36.57403 -34.91277 -32.18207 -31.66024 -30.96749 -29.93250 -28.58261 -26.26805 -24.88845 -24.21093 -23.75859 -22.32102 -20.04962 -19.28343 -18.64670 -18.22982 -18.10215 -18.01404 -17.33106 -17.25333 -16.88190 -16.24026 -16.07894 -15.93261 -15.54689 -15.37806 -15.13255 -15.00879 -14.64906 -14.34484 -14.17608 -13.81866 -13.59983 -13.48144 -13.27600 -13.18641 -13.12098 -13.04269 -12.79541 -12.66003 -12.50992 -12.15646 -12.01030 -11.86689 -11.73603 -11.12658 -10.65142 -10.42284 -10.00648 -9.43437 -8.38268 -8.22607 -6.38200 0.01365 0.17779 1.35974 1.40091 1.47506 1.82166 1.84613 2.33245 2.45001 2.55447 2.95246 3.06908 3.37404 3.60736 3.70013 3.89323 4.01531 4.03618 4.18230 4.29311 4.41909 4.42917 4.47061 4.63646 4.67174 4.82113 4.90173 4.93188 4.94517 4.98883 5.04265 5.05044 5.13951 5.21376 5.38752 5.56889 5.66808 5.84409 6.04340 6.06366 6.29206 6.70201 6.81930 7.28248 7.49844 8.84198 Molecular weight = 312.14amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.003548 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.139822 B = 7889.056482 C = 8203.933402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.098 3.902 3 N -0.603 5.603 4 C 0.264 3.736 5 C -0.540 4.540 6 H 0.057 0.943 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.968 3.032 10 H -0.258 1.258 11 H -0.282 1.282 12 H -0.276 1.276 13 C 0.472 3.528 14 O -0.588 6.588 15 C 0.109 3.891 16 N -0.605 5.605 17 C 0.087 3.913 18 C 0.239 3.761 19 C -0.172 4.172 20 C -0.063 4.063 21 C -0.021 4.021 22 F -0.147 7.147 23 C 0.098 3.902 24 F -0.142 7.142 25 C -0.222 4.222 26 H 0.034 0.966 27 H 0.098 0.902 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.018 0.982 32 H -0.011 1.011 33 H 0.266 0.734 34 H 0.123 0.877 35 H 0.141 0.859 36 H 0.031 0.969 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.169 0.831 40 H 0.176 0.824 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.467 -7.657 20.186 21.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.024 4.024 3 N -0.335 5.335 4 C 0.142 3.858 5 C -0.579 4.579 6 H 0.075 0.925 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.793 3.207 10 H -0.182 1.182 11 H -0.207 1.207 12 H -0.202 1.202 13 C 0.259 3.741 14 O -0.468 6.468 15 C -0.018 4.018 16 N -0.312 5.312 17 C -0.055 4.055 18 C 0.134 3.866 19 C -0.194 4.194 20 C -0.083 4.083 21 C -0.042 4.042 22 F -0.126 7.126 23 C 0.077 3.923 24 F -0.121 7.121 25 C -0.245 4.245 26 H 0.053 0.947 27 H 0.116 0.884 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.127 0.873 31 H 0.036 0.964 32 H 0.008 0.992 33 H 0.075 0.925 34 H 0.141 0.859 35 H 0.159 0.841 36 H 0.050 0.950 37 H 0.121 0.879 38 H 0.110 0.890 39 H 0.187 0.813 40 H 0.194 0.806 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.186 -7.091 19.938 21.400 hybrid contribution 0.096 0.612 -1.368 1.501 sum -3.090 -6.479 18.570 19.909 Atomic orbital electron populations 1.22189 0.94979 1.03602 1.01446 1.21797 0.94971 0.81250 1.04397 1.48343 1.63836 1.15154 1.06153 1.18638 0.95294 0.91209 0.80657 1.21684 0.97780 1.31969 1.06466 0.92461 1.25899 1.02459 0.94479 0.96502 1.70064 1.37930 1.34326 1.14784 0.85456 0.78912 0.79097 0.77277 1.18224 1.20685 1.20184 1.22156 0.77713 0.87116 0.87124 1.90657 1.47593 1.20603 1.87921 1.21636 1.05468 0.92860 0.81797 1.46278 1.09786 1.41557 1.33570 1.21949 0.80480 1.03275 0.99783 1.17742 0.87339 0.89768 0.91721 1.20933 1.01759 0.98316 0.98369 1.21100 0.88774 0.98528 0.99854 1.17642 0.88898 0.98058 0.99642 1.91447 1.63261 1.71709 1.86160 1.17561 0.80301 0.99162 0.95231 1.91471 1.38729 1.95630 1.86249 1.20491 0.92514 1.05950 1.05542 0.94699 0.88371 0.92336 0.90883 0.87318 0.96443 0.99245 0.92509 0.85949 0.84116 0.95002 0.87923 0.88957 0.81348 0.80644 0.84531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 10.24 71.98 0.74 -3.06 16 2 C 0.10 2.69 5.93 86.38 0.51 3.20 16 3 N -0.60 -24.21 2.46 -826.16 -2.03 -26.24 16 4 C 0.26 14.17 5.16 85.64 0.44 14.61 16 5 C -0.54 -30.71 9.39 25.60 0.24 -30.47 16 6 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 7 C 0.01 0.31 5.46 84.65 0.46 0.77 16 8 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 9 Si 0.97 44.37 29.54 68.60 2.03 46.40 16 10 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 C 0.47 18.25 7.74 87.66 0.68 18.93 16 14 O -0.59 -29.59 16.01 -3.03 -0.05 -29.64 16 15 C 0.11 2.62 4.23 85.63 0.36 2.98 16 16 N -0.61 -14.28 2.50 -726.51 -1.82 -16.09 16 17 C 0.09 1.55 10.23 127.77 1.31 2.86 16 18 C 0.24 5.95 6.55 38.17 0.25 6.20 16 19 C -0.17 -3.40 9.21 22.40 0.21 -3.19 16 20 C -0.06 -1.26 10.02 22.29 0.22 -1.03 16 21 C -0.02 -0.54 7.30 22.41 0.16 -0.38 16 22 F -0.15 -4.10 17.18 44.97 0.77 -3.32 16 23 C 0.10 2.86 7.30 22.39 0.16 3.03 16 24 F -0.14 -4.48 17.18 44.97 0.77 -3.70 16 25 C -0.22 -6.15 9.18 22.44 0.21 -5.95 16 26 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.06 1.24 7.22 -2.39 -0.02 1.23 16 29 H 0.07 2.18 8.07 -2.38 -0.02 2.16 16 30 H 0.11 2.00 6.44 -2.39 -0.02 1.99 16 31 H 0.02 0.97 8.07 -2.39 -0.02 0.95 16 32 H -0.01 -0.67 7.42 -2.39 -0.02 -0.69 16 33 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 34 H 0.12 2.40 5.25 -2.39 -0.01 2.38 16 35 H 0.14 2.34 7.15 -2.39 -0.02 2.32 16 36 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.10 1.15 6.20 -2.39 -0.01 1.13 16 38 H 0.09 1.24 7.89 -2.39 -0.02 1.22 16 39 H 0.17 2.27 6.14 -2.91 -0.02 2.25 16 40 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 41 H 0.14 3.73 6.15 -2.91 -0.02 3.71 16 Total: -1.00 -79.82 352.02 6.98 -72.84 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 1.06 Total: 7.79 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 5.95 Total: 8.50 kcal Atomic # 7 Polarization: -95.31 SS G_CDS: -3.56 Total: -98.87 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.05 Total: -29.64 kcal Atomic # 9 Polarization: -8.57 SS G_CDS: 1.54 Total: -7.03 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -79.82 6.98 -72.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065594708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.615 kcal (2) G-P(sol) polarization free energy of solvation -79.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds