Wall clock time and date at job start Tue Mar 31 2020 10:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99305 * 2 1 4 4 C 1.50702 * 109.47206 * 293.94981 * 3 2 1 5 5 H 1.07990 * 119.99891 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99588 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00136 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99737 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47118 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.46938 * 120.00335 * 8 6 4 11 11 H 1.48505 * 109.46930 * 240.00323 * 8 6 4 12 12 C 1.46899 * 110.99991 * 123.95060 * 2 1 3 13 13 C 1.52998 * 109.46858 * 163.94840 * 12 2 1 14 14 H 1.09003 * 109.47469 * 55.04211 * 13 12 2 15 15 O 1.42900 * 109.47173 * 295.04684 * 13 12 2 16 16 C 1.53000 * 109.47107 * 175.04575 * 13 12 2 17 17 N 1.46904 * 109.47085 * 184.99848 * 16 13 12 18 18 C 1.46902 * 110.99534 * 180.02562 * 17 16 13 19 19 C 1.50703 * 109.46547 * 180.02562 * 18 17 16 20 20 C 1.38262 * 119.99033 * 269.71964 * 19 18 17 21 21 C 1.38226 * 120.02707 * 179.76868 * 20 19 18 22 22 C 1.38236 * 120.00875 * 0.51277 * 21 20 19 23 23 C 1.38336 * 119.99048 * 359.74014 * 22 21 20 24 24 Cl 1.73599 * 120.01642 * 180.02562 * 23 22 21 25 25 C 1.38190 * 119.99577 * 90.00312 * 19 18 17 26 26 H 1.08998 * 109.47439 * 65.32228 * 1 2 3 27 27 H 1.08994 * 109.47470 * 305.31641 * 1 2 3 28 28 H 1.09004 * 109.46549 * 185.31844 * 1 2 3 29 29 H 1.08997 * 109.47475 * 53.95587 * 3 2 1 30 30 H 1.09000 * 109.46537 * 173.95045 * 3 2 1 31 31 H 0.97003 * 119.99947 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.47186 * 283.95255 * 12 2 1 33 33 H 1.08998 * 109.46913 * 43.95393 * 12 2 1 34 34 H 0.96698 * 114.00266 * 299.99986 * 15 13 12 35 35 H 1.08996 * 109.47256 * 305.00193 * 16 13 12 36 36 H 1.09001 * 109.46972 * 65.00325 * 16 13 12 37 37 H 1.00901 * 111.00111 * 303.95536 * 17 16 13 38 38 H 1.08997 * 109.47417 * 299.99878 * 18 17 16 39 39 H 1.08997 * 109.47488 * 60.00619 * 18 17 16 40 40 H 1.08005 * 119.99152 * 0.02562 * 20 19 18 41 41 H 1.07996 * 119.99563 * 180.25164 * 21 20 19 42 42 H 1.08001 * 120.00698 * 179.76903 * 22 21 20 43 43 H 1.07999 * 120.00431 * 359.94621 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0266 3.3496 -1.5284 7 7 2.7116 4.0020 -0.6148 8 14 1.5816 4.1874 -3.1377 9 1 0.8136 3.2450 -3.9905 10 1 0.7540 5.3882 -2.8582 11 1 2.8230 4.5950 -3.8433 12 6 1.9955 -0.7659 1.1376 13 6 3.4724 -1.0852 0.8977 14 1 4.0177 -0.1608 0.7072 15 8 3.5950 -1.9518 -0.2319 16 6 4.0527 -1.7741 2.1344 17 7 5.4967 -1.9729 1.9519 18 6 6.0891 -2.6340 3.1223 19 6 7.5679 -2.8200 2.8992 20 6 8.0370 -3.9766 2.3044 21 6 9.3928 -4.1459 2.0950 22 6 10.2813 -3.1633 2.4899 23 6 9.8130 -2.0081 3.0898 24 17 10.9282 -0.7734 3.5854 25 6 8.4552 -1.8370 3.2944 26 1 -0.3634 0.4290 -0.9338 27 1 -0.3634 0.5940 0.8385 28 1 -0.3632 -1.0233 0.0953 29 1 1.5610 1.9274 0.8309 30 1 3.0796 1.3445 0.1083 31 1 2.9861 4.9182 -0.7768 32 1 1.8943 -0.1776 2.0496 33 1 1.4350 -1.6951 1.2405 34 1 3.1332 -2.7955 -0.1323 35 1 3.8797 -1.1513 3.0120 36 1 3.5677 -2.7404 2.2732 37 1 5.6864 -2.4932 1.1085 38 1 5.9303 -2.0176 4.0071 39 1 5.6182 -3.6063 3.2676 40 1 7.3436 -4.7464 1.9994 41 1 9.7583 -5.0477 1.6266 42 1 11.3410 -3.2972 2.3296 43 1 8.0889 -0.9353 3.7624 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591241663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:19 Heat of formation + Delta-G solvation = -30.351289 kcal Electronic energy + Delta-G solvation = -22821.257716 eV Core-core repulsion = 19312.930635 eV Total energy + Delta-G solvation = -3508.327081 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.72685 -38.21979 -36.77164 -35.98379 -34.98416 -32.45603 -31.87823 -30.98366 -29.50875 -27.31397 -26.45536 -24.51632 -23.16066 -22.95450 -21.63416 -21.38115 -20.01415 -17.38791 -16.63737 -16.26663 -16.10289 -15.72202 -15.47506 -15.10393 -14.72777 -14.51276 -14.25234 -13.95048 -13.78429 -13.59211 -13.26709 -13.17439 -12.59891 -12.40779 -12.00191 -11.90196 -11.67310 -11.63561 -11.56485 -11.36374 -11.15006 -11.01290 -10.92682 -10.69538 -10.59523 -10.33222 -9.72975 -9.63307 -9.20684 -9.08530 -8.97320 -8.47508 -8.37762 -7.18528 -5.97462 -3.97876 0.87291 0.99773 1.91099 3.30087 3.35127 3.42353 3.47471 4.10053 4.44157 4.47760 4.53927 4.74387 4.76365 4.87603 4.97047 5.01121 5.18604 5.25835 5.33467 5.36553 5.41884 5.54652 5.57230 5.63017 5.72364 5.79579 5.96172 6.02601 6.04665 6.08863 6.22336 6.36008 6.50212 6.54833 6.72284 6.88863 7.30429 7.33362 7.34763 7.84276 8.06371 8.14144 8.23950 8.59441 9.09430 9.65886 11.13664 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.013759 B = 0.002595 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.567432 B =10789.427096 C =12120.088003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.532 5.532 3 C 0.191 3.809 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.284 1.284 12 C 0.027 3.973 13 C 0.114 3.886 14 H 0.115 0.885 15 O -0.542 6.542 16 C 0.030 3.970 17 N -0.678 5.678 18 C 0.097 3.903 19 C -0.067 4.067 20 C -0.110 4.110 21 C -0.108 4.108 22 C -0.113 4.113 23 C -0.035 4.035 24 Cl -0.072 7.072 25 C -0.087 4.087 26 H 0.072 0.928 27 H 0.011 0.989 28 H 0.041 0.959 29 H -0.011 1.011 30 H 0.033 0.967 31 H 0.260 0.740 32 H 0.031 0.969 33 H 0.059 0.941 34 H 0.358 0.642 35 H 0.080 0.920 36 H 0.029 0.971 37 H 0.350 0.650 38 H 0.082 0.918 39 H 0.040 0.960 40 H 0.126 0.874 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.181 -18.338 10.676 23.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.256 5.256 3 C 0.066 3.934 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.102 4.102 13 C 0.054 3.946 14 H 0.133 0.867 15 O -0.345 6.345 16 C -0.100 4.100 17 N -0.310 5.310 18 C -0.031 4.031 19 C -0.068 4.068 20 C -0.128 4.128 21 C -0.127 4.127 22 C -0.132 4.132 23 C -0.061 4.061 24 Cl -0.043 7.043 25 C -0.106 4.106 26 H 0.091 0.909 27 H 0.030 0.970 28 H 0.060 0.940 29 H 0.006 0.994 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.203 0.797 35 H 0.098 0.902 36 H 0.047 0.953 37 H 0.169 0.831 38 H 0.100 0.900 39 H 0.058 0.942 40 H 0.144 0.856 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 12.018 -17.132 10.305 23.326 hybrid contribution -0.992 -0.183 0.183 1.025 sum 11.026 -17.314 10.488 23.051 Atomic orbital electron populations 1.22185 0.88879 0.98503 1.01188 1.62061 1.06501 1.17951 1.39121 1.19808 0.95635 0.81371 0.96570 1.21177 1.34558 0.96772 1.01681 0.91894 1.24988 0.95367 0.97398 0.96950 1.69966 1.38533 1.11372 1.34007 0.86454 0.78148 0.79232 0.83666 1.19691 1.21218 1.20979 1.22661 0.95704 0.98139 0.93744 1.22036 0.94745 0.94037 0.83801 0.86740 1.86715 1.76060 1.30487 1.41224 1.22714 0.87556 0.99302 1.00389 1.60389 1.12175 1.53891 1.04534 1.20899 0.89483 0.97652 0.95110 1.19754 0.95362 0.93622 0.98074 1.21173 0.95794 0.97402 0.98478 1.21071 0.92985 0.98922 0.99674 1.21060 1.00642 0.92614 0.98879 1.20950 0.90948 0.91657 1.02572 1.98379 1.62134 1.53734 1.90062 1.20980 0.90563 0.99421 0.99644 0.90940 0.97009 0.94006 0.99366 0.94881 0.93037 0.95069 0.92280 0.79684 0.90197 0.95269 0.83064 0.89950 0.94230 0.85612 0.85107 0.85090 0.84647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 9.32 60.07 0.56 1.36 16 2 N -0.53 -11.54 4.66 -244.37 -1.14 -12.68 16 3 C 0.19 5.05 4.57 -4.97 -0.02 5.03 16 4 C -0.50 -14.47 8.58 -34.44 -0.30 -14.77 16 5 H 0.06 1.81 7.10 -52.49 -0.37 1.43 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 8 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 C 0.03 0.47 4.61 -3.83 -0.02 0.45 16 13 C 0.11 1.83 3.26 -26.73 -0.09 1.74 16 14 H 0.11 2.32 6.46 -51.93 -0.34 1.98 16 15 O -0.54 -8.74 12.81 -35.23 -0.45 -9.19 16 16 C 0.03 0.37 5.36 -3.82 -0.02 0.35 16 17 N -0.68 -8.14 6.49 -115.06 -0.75 -8.89 16 18 C 0.10 0.93 5.81 -4.97 -0.03 0.90 16 19 C -0.07 -0.66 5.39 -104.63 -0.56 -1.23 16 20 C -0.11 -0.94 9.70 -39.58 -0.38 -1.32 16 21 C -0.11 -0.86 10.05 -39.59 -0.40 -1.26 16 22 C -0.11 -1.00 9.83 -39.55 -0.39 -1.39 16 23 C -0.03 -0.36 6.32 -39.49 -0.25 -0.61 16 24 Cl -0.07 -0.74 28.96 -51.86 -1.50 -2.24 16 25 C -0.09 -0.92 9.49 -39.55 -0.38 -1.30 16 26 H 0.07 1.51 7.02 -51.93 -0.36 1.14 16 27 H 0.01 0.22 8.07 -51.93 -0.42 -0.20 16 28 H 0.04 0.67 7.88 -51.93 -0.41 0.27 16 29 H -0.01 -0.32 8.07 -51.93 -0.42 -0.74 16 30 H 0.03 0.94 6.34 -51.93 -0.33 0.61 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.03 0.54 8.05 -51.93 -0.42 0.12 16 33 H 0.06 0.85 7.82 -51.93 -0.41 0.44 16 34 H 0.36 4.22 9.05 45.56 0.41 4.63 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.35 4.24 8.28 -39.29 -0.33 3.91 16 38 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 39 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 40 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 41 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 371.92 15.07 5.60 5.60 Total: -1.00 -32.24 371.92 -10.78 -43.02 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -5.90 Total: 4.30 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -2.37 Total: -10.58 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -1.15 Total: -48.02 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.45 Total: -9.19 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.24 -10.78 -43.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591241663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.668 kcal (2) G-P(sol) polarization free energy of solvation -32.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds