Wall clock time and date at job start Tue Mar 31 2020 10:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99305 * 2 1 4 4 C 1.50702 * 109.47206 * 293.94981 * 3 2 1 5 5 H 1.07990 * 119.99891 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99588 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00136 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99737 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47118 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.46938 * 120.00335 * 8 6 4 11 11 H 1.48505 * 109.46930 * 240.00323 * 8 6 4 12 12 C 1.46899 * 110.99991 * 123.95060 * 2 1 3 13 13 C 1.52998 * 109.46858 * 163.94840 * 12 2 1 14 14 H 1.09003 * 109.47469 * 55.04211 * 13 12 2 15 15 O 1.42900 * 109.47173 * 295.04684 * 13 12 2 16 16 C 1.53000 * 109.47107 * 175.04575 * 13 12 2 17 17 N 1.46904 * 109.47085 * 184.99848 * 16 13 12 18 18 C 1.46902 * 110.99534 * 180.02562 * 17 16 13 19 19 C 1.50703 * 109.46547 * 180.02562 * 18 17 16 20 20 C 1.38262 * 119.99033 * 269.71964 * 19 18 17 21 21 C 1.38226 * 120.02707 * 179.76868 * 20 19 18 22 22 C 1.38236 * 120.00875 * 0.51277 * 21 20 19 23 23 C 1.38336 * 119.99048 * 359.74014 * 22 21 20 24 24 Cl 1.73599 * 120.01642 * 180.02562 * 23 22 21 25 25 C 1.38190 * 119.99577 * 90.00312 * 19 18 17 26 26 H 1.08998 * 109.47439 * 65.32228 * 1 2 3 27 27 H 1.08994 * 109.47470 * 305.31641 * 1 2 3 28 28 H 1.09004 * 109.46549 * 185.31844 * 1 2 3 29 29 H 1.08997 * 109.47475 * 53.95587 * 3 2 1 30 30 H 1.09000 * 109.46537 * 173.95045 * 3 2 1 31 31 H 0.97003 * 119.99947 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.47186 * 283.95255 * 12 2 1 33 33 H 1.08998 * 109.46913 * 43.95393 * 12 2 1 34 34 H 0.96698 * 114.00266 * 299.99986 * 15 13 12 35 35 H 1.08996 * 109.47256 * 305.00193 * 16 13 12 36 36 H 1.09001 * 109.46972 * 65.00325 * 16 13 12 37 37 H 1.00901 * 111.00111 * 303.95536 * 17 16 13 38 38 H 1.08997 * 109.47417 * 299.99878 * 18 17 16 39 39 H 1.08997 * 109.47488 * 60.00619 * 18 17 16 40 40 H 1.08005 * 119.99152 * 0.02562 * 20 19 18 41 41 H 1.07996 * 119.99563 * 180.25164 * 21 20 19 42 42 H 1.08001 * 120.00698 * 179.76903 * 22 21 20 43 43 H 1.07999 * 120.00431 * 359.94621 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0266 3.3496 -1.5284 7 7 2.7116 4.0020 -0.6148 8 14 1.5816 4.1874 -3.1377 9 1 0.8136 3.2450 -3.9905 10 1 0.7540 5.3882 -2.8582 11 1 2.8230 4.5950 -3.8433 12 6 1.9955 -0.7659 1.1376 13 6 3.4724 -1.0852 0.8977 14 1 4.0177 -0.1608 0.7072 15 8 3.5950 -1.9518 -0.2319 16 6 4.0527 -1.7741 2.1344 17 7 5.4967 -1.9729 1.9519 18 6 6.0891 -2.6340 3.1223 19 6 7.5679 -2.8200 2.8992 20 6 8.0370 -3.9766 2.3044 21 6 9.3928 -4.1459 2.0950 22 6 10.2813 -3.1633 2.4899 23 6 9.8130 -2.0081 3.0898 24 17 10.9282 -0.7734 3.5854 25 6 8.4552 -1.8370 3.2944 26 1 -0.3634 0.4290 -0.9338 27 1 -0.3634 0.5940 0.8385 28 1 -0.3632 -1.0233 0.0953 29 1 1.5610 1.9274 0.8309 30 1 3.0796 1.3445 0.1083 31 1 2.9861 4.9182 -0.7768 32 1 1.8943 -0.1776 2.0496 33 1 1.4350 -1.6951 1.2405 34 1 3.1332 -2.7955 -0.1323 35 1 3.8797 -1.1513 3.0120 36 1 3.5677 -2.7404 2.2732 37 1 5.6864 -2.4932 1.1085 38 1 5.9303 -2.0176 4.0071 39 1 5.6182 -3.6063 3.2676 40 1 7.3436 -4.7464 1.9994 41 1 9.7583 -5.0477 1.6266 42 1 11.3410 -3.2972 2.3296 43 1 8.0889 -0.9353 3.7624 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591241663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:18 Heat of formation + Delta-G solvation = -54.459361 kcal Electronic energy + Delta-G solvation = -22822.303121 eV Core-core repulsion = 19312.930635 eV Total energy + Delta-G solvation = -3509.372486 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.44015 -39.51974 -37.66252 -37.30074 -36.09005 -34.60307 -32.74093 -31.68444 -30.74738 -29.32276 -27.56937 -25.93603 -24.70839 -23.64270 -22.80265 -22.26850 -21.63663 -18.62522 -18.13832 -17.42326 -17.26955 -16.66455 -16.49259 -16.42860 -16.12957 -15.90851 -15.42729 -15.20303 -14.92106 -14.63409 -14.32129 -14.29649 -13.98026 -13.80830 -13.35292 -13.13909 -12.96441 -12.78924 -12.57834 -12.55528 -12.39272 -12.37248 -12.30491 -12.28125 -12.14865 -11.76224 -11.49861 -11.29913 -10.77451 -10.60485 -9.90859 -9.70048 -9.31736 -8.94702 -8.19871 -6.29335 0.17279 0.29649 1.15677 1.39563 1.41175 1.54480 2.40620 2.58307 3.07756 3.13472 3.50889 3.70875 3.72398 3.89023 4.02056 4.11723 4.17437 4.28591 4.32672 4.35269 4.45019 4.51493 4.60539 4.62974 4.65495 4.78807 4.80999 4.84580 4.97176 5.08390 5.13339 5.25830 5.28156 5.32300 5.37251 5.52369 5.65574 5.84550 6.02533 6.08186 6.35349 6.43209 6.66330 6.86897 7.07696 7.40091 8.91489 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.013759 B = 0.002595 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.567432 B =10789.427096 C =12120.088003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.544 5.544 3 C 0.208 3.792 4 C -0.521 4.521 5 H 0.061 0.939 6 C -0.001 4.001 7 N -0.935 5.935 8 Si 0.969 3.031 9 H -0.263 1.263 10 H -0.277 1.277 11 H -0.279 1.279 12 C 0.027 3.973 13 C 0.123 3.877 14 H 0.061 0.939 15 O -0.560 6.560 16 C 0.045 3.955 17 N -0.697 5.697 18 C 0.102 3.898 19 C -0.078 4.078 20 C -0.109 4.109 21 C -0.106 4.106 22 C -0.118 4.118 23 C -0.051 4.051 24 Cl -0.081 7.081 25 C -0.107 4.107 26 H 0.053 0.947 27 H 0.007 0.993 28 H 0.084 0.916 29 H -0.042 1.042 30 H 0.004 0.996 31 H 0.264 0.736 32 H 0.027 0.973 33 H 0.100 0.900 34 H 0.380 0.620 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.349 0.651 38 H 0.079 0.921 39 H 0.062 0.938 40 H 0.149 0.851 41 H 0.160 0.840 42 H 0.147 0.853 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.559 -20.880 10.077 25.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.268 5.268 3 C 0.082 3.918 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.199 4.199 7 N -0.576 5.576 8 Si 0.793 3.207 9 H -0.187 1.187 10 H -0.202 1.202 11 H -0.205 1.205 12 C -0.102 4.102 13 C 0.063 3.937 14 H 0.079 0.921 15 O -0.366 6.366 16 C -0.085 4.085 17 N -0.330 5.330 18 C -0.026 4.026 19 C -0.079 4.079 20 C -0.128 4.128 21 C -0.124 4.124 22 C -0.137 4.137 23 C -0.078 4.078 24 Cl -0.052 7.052 25 C -0.126 4.126 26 H 0.072 0.928 27 H 0.025 0.975 28 H 0.103 0.897 29 H -0.024 1.024 30 H 0.022 0.978 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.118 0.882 34 H 0.228 0.772 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.169 0.831 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.167 0.833 41 H 0.178 0.822 42 H 0.164 0.836 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.381 -19.708 9.720 24.747 hybrid contribution -0.781 0.520 0.386 1.014 sum 10.600 -19.188 10.106 24.139 Atomic orbital electron populations 1.22209 0.87429 1.00929 1.00016 1.61951 1.07930 1.15123 1.41790 1.19402 0.93800 0.83914 0.94670 1.21503 1.34599 0.97399 1.02462 0.92121 1.25935 0.95092 0.98156 1.00723 1.70096 1.39490 1.11829 1.36161 0.85340 0.78059 0.78220 0.79040 1.18689 1.20229 1.20510 1.22804 0.96721 0.98880 0.91790 1.21722 0.93655 0.92799 0.85543 0.92082 1.86661 1.76668 1.31723 1.41524 1.22483 0.87900 1.00282 0.97820 1.60318 1.12184 1.55027 1.05453 1.20889 0.89380 0.98441 0.93874 1.19860 0.95322 0.94070 0.98622 1.21477 0.96582 0.97240 0.97494 1.21450 0.92668 0.99488 0.98766 1.21346 1.01817 0.92196 0.98319 1.21119 0.90806 0.92244 1.03581 1.98368 1.62306 1.54268 1.90238 1.21043 0.91176 0.99702 1.00687 0.92826 0.97451 0.89717 1.02410 0.97769 0.92770 0.95481 0.88179 0.77199 0.90430 0.91938 0.83146 0.90251 0.91951 0.83349 0.82199 0.83557 0.85681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.60 9.32 127.69 1.19 2.79 16 2 N -0.54 -23.59 4.66 -927.06 -4.32 -27.91 16 3 C 0.21 11.48 4.57 85.56 0.39 11.87 16 4 C -0.52 -30.70 8.58 25.60 0.22 -30.48 16 5 H 0.06 3.52 7.10 -2.92 -0.02 3.50 16 6 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 7 N -0.94 -58.16 13.29 21.45 0.28 -57.88 16 8 Si 0.97 45.81 29.54 68.60 2.03 47.83 16 9 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 C 0.03 0.89 4.61 86.30 0.40 1.29 16 13 C 0.12 3.93 3.26 30.59 0.10 4.03 16 14 H 0.06 2.63 6.46 -2.39 -0.02 2.62 16 15 O -0.56 -17.39 12.81 -148.98 -1.91 -19.30 16 16 C 0.04 1.02 5.36 86.30 0.46 1.49 16 17 N -0.70 -16.14 6.49 -517.93 -3.36 -19.51 16 18 C 0.10 1.81 5.81 85.56 0.50 2.31 16 19 C -0.08 -1.46 5.39 -19.87 -0.11 -1.57 16 20 C -0.11 -1.61 9.70 22.27 0.22 -1.39 16 21 C -0.11 -1.43 10.05 22.27 0.22 -1.21 16 22 C -0.12 -1.94 9.83 22.29 0.22 -1.72 16 23 C -0.05 -1.05 6.32 22.33 0.14 -0.91 16 24 Cl -0.08 -1.69 28.96 -2.72 -0.08 -1.77 16 25 C -0.11 -2.31 9.49 22.29 0.21 -2.10 16 26 H 0.05 2.20 7.02 -2.39 -0.02 2.19 16 27 H 0.01 0.27 8.07 -2.39 -0.02 0.25 16 28 H 0.08 2.47 7.88 -2.39 -0.02 2.45 16 29 H -0.04 -2.49 8.07 -2.39 -0.02 -2.51 16 30 H 0.00 0.26 6.34 -2.39 -0.02 0.24 16 31 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 32 H 0.03 0.93 8.05 -2.39 -0.02 0.91 16 33 H 0.10 2.50 7.82 -2.39 -0.02 2.48 16 34 H 0.38 7.85 9.05 -74.06 -0.67 7.18 16 35 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.35 8.05 8.28 -89.69 -0.74 7.30 16 38 H 0.08 1.44 8.08 -2.39 -0.02 1.42 16 39 H 0.06 0.83 8.08 -2.39 -0.02 0.81 16 40 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 41 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 42 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 43 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -72.49 371.92 -3.13 -75.61 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -0.40 Total: 18.13 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: 4.63 Total: -15.22 kcal Atomic # 7 Polarization: -97.89 SS G_CDS: -7.39 Total: -105.29 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -1.91 Total: -19.30 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -0.08 Total: -1.77 kcal Total: -72.49 -3.13 -75.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591241663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.152 kcal (2) G-P(sol) polarization free energy of solvation -72.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds