Wall clock time and date at job start Tue Mar 31 2020 10:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46506 * 109.47319 * 2 1 4 4 C 1.46490 * 120.00217 * 277.45246 * 3 2 1 5 5 C 1.50709 * 109.46927 * 269.99456 * 4 3 2 6 6 H 1.07998 * 119.99855 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99766 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00639 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99717 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47119 * 59.99759 * 9 7 5 11 11 H 1.48501 * 109.46956 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46816 * 299.99904 * 9 7 5 13 13 C 1.34784 * 119.99532 * 97.44447 * 3 2 1 14 14 O 1.21566 * 119.99777 * 185.64714 * 13 3 2 15 15 C 1.47740 * 120.00097 * 5.65574 * 13 3 2 16 16 C 1.40081 * 120.86411 * 315.26259 * 15 13 3 17 17 N 1.31953 * 119.01217 * 179.97438 * 16 15 13 18 18 C 1.32668 * 120.89878 * 359.97438 * 17 16 15 19 19 C 1.48324 * 119.04471 * 180.02562 * 18 17 16 20 20 C 1.39306 * 119.72109 * 180.02562 * 19 18 17 21 21 C 1.38502 * 119.06491 * 180.25960 * 20 19 18 22 22 C 1.38704 * 118.49539 * 359.45567 * 21 20 19 23 23 C 1.38411 * 119.35467 * 0.54449 * 22 21 20 24 24 N 1.31635 * 120.89842 * 359.72271 * 23 22 21 25 25 N 1.32659 * 121.90432 * 0.28475 * 18 17 16 26 26 C 1.31953 * 120.89794 * 359.43041 * 25 18 17 27 27 H 1.09001 * 109.47508 * 308.88242 * 1 2 3 28 28 H 1.09010 * 109.47233 * 68.87581 * 1 2 3 29 29 H 1.08992 * 109.47153 * 188.87625 * 1 2 3 30 30 H 1.08998 * 109.47245 * 240.00229 * 2 1 3 31 31 H 1.09000 * 109.47685 * 119.99994 * 2 1 3 32 32 H 1.08998 * 109.47260 * 29.99494 * 4 3 2 33 33 H 1.09002 * 109.47303 * 149.99827 * 4 3 2 34 34 H 0.97001 * 120.00869 * 180.02562 * 8 7 5 35 35 H 1.07998 * 120.48918 * 0.02562 * 16 15 13 36 36 H 1.08001 * 120.46859 * 359.97438 * 20 19 18 37 37 H 1.08001 * 120.75387 * 179.72484 * 21 20 19 38 38 H 1.07999 * 120.31952 * 180.25394 * 22 21 20 39 39 H 1.08001 * 119.54890 * 179.70475 * 23 22 21 40 40 H 1.08007 * 120.49409 * 180.24954 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1074 2.1267 -1.2579 5 6 3.4663 1.9128 -1.8735 6 1 4.1911 1.2847 -1.3770 7 6 3.7840 2.5189 -3.0704 8 7 2.9016 3.2841 -3.6747 9 14 5.4682 2.2531 -3.8337 10 1 5.6681 0.8059 -4.1002 11 1 5.5585 3.0089 -5.1088 12 1 6.5168 2.7337 -2.8986 13 6 2.3855 1.9661 1.1575 14 8 2.6928 3.1422 1.1735 15 6 2.4148 1.1779 2.4067 16 6 1.3638 0.3119 2.7348 17 7 1.4280 -0.3750 3.8596 18 6 2.4687 -0.2540 4.6734 19 6 2.4986 -1.0462 5.9270 20 6 3.5844 -0.9296 6.7920 21 6 3.6008 -1.6797 7.9561 22 6 2.5243 -2.5133 8.2215 23 6 1.4785 -2.5796 7.3172 24 7 1.4910 -1.8597 6.2153 25 7 3.4811 0.5589 4.4008 26 6 3.4950 1.2759 3.2931 27 1 -0.3634 0.6451 0.8000 28 1 -0.3634 0.3704 -0.9587 29 1 -0.3633 -1.0153 0.1586 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.3378 1.7740 -1.9445 33 1 1.9604 3.1889 -1.0620 34 1 3.1250 3.7102 -4.5170 35 1 0.5141 0.2074 2.0765 36 1 4.4039 -0.2670 6.5558 37 1 4.4308 -1.6139 8.6439 38 1 2.5046 -3.1082 9.1226 39 1 0.6410 -3.2312 7.5184 40 1 4.3244 1.9327 3.0758 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930463959.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:15 Heat of formation + Delta-G solvation = 67.307255 kcal Electronic energy + Delta-G solvation = -24626.607931 eV Core-core repulsion = 21021.408148 eV Total energy + Delta-G solvation = -3605.199783 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.133 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.39132 -40.15551 -38.83842 -35.67343 -33.94847 -33.50029 -32.75615 -32.57964 -30.72168 -30.29161 -27.44188 -25.60481 -24.92021 -23.38558 -23.21239 -23.08497 -22.21380 -19.15393 -18.33984 -17.83348 -16.88391 -16.57899 -16.45671 -16.00955 -15.67308 -15.27851 -15.10793 -14.49253 -14.36682 -14.21070 -13.80342 -13.72278 -13.41830 -13.24681 -12.78395 -12.48732 -12.17540 -12.12141 -11.87102 -11.51707 -11.27756 -11.15201 -10.96824 -10.71473 -10.64454 -10.30899 -10.21056 -10.02128 -9.76104 -9.74107 -9.33451 -9.22720 -8.88830 -8.49374 -7.84325 -6.10940 -4.16584 -0.01359 0.97397 1.00587 1.19142 3.08401 3.22459 3.28363 3.33122 3.34751 3.42891 3.70285 3.84421 3.94749 4.38573 4.44437 4.48204 4.54145 4.67764 4.73445 4.79918 4.88610 5.03063 5.16559 5.20937 5.24188 5.47038 5.48860 5.56083 5.68245 5.81878 5.83733 5.90259 6.13296 6.15555 6.31618 6.39416 6.76700 6.95115 7.32668 7.39253 7.61394 7.84171 7.92456 8.13774 8.19452 8.71605 8.90164 9.48766 10.97110 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.024078 B = 0.002931 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.630086 B = 9551.968585 C =10053.086945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.095 3.905 3 N -0.584 5.584 4 C 0.246 3.754 5 C -0.532 4.532 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.555 3.445 14 O -0.527 6.527 15 C -0.214 4.214 16 C 0.161 3.839 17 N -0.481 5.481 18 C 0.358 3.642 19 C 0.172 3.828 20 C -0.121 4.121 21 C -0.084 4.084 22 C -0.160 4.160 23 C 0.096 3.904 24 N -0.441 5.441 25 N -0.507 5.507 26 C 0.197 3.803 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.037 0.963 33 H 0.048 0.952 34 H 0.265 0.735 35 H 0.188 0.812 36 H 0.151 0.849 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.161 0.839 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.344 -12.310 20.328 23.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.029 4.029 3 N -0.314 5.314 4 C 0.127 3.873 5 C -0.571 4.571 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.531 5.531 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.339 3.661 14 O -0.404 6.404 15 C -0.222 4.222 16 C -0.006 4.006 17 N -0.194 5.194 18 C 0.092 3.908 19 C 0.035 3.965 20 C -0.143 4.143 21 C -0.110 4.110 22 C -0.180 4.180 23 C -0.063 4.063 24 N -0.150 5.150 25 N -0.221 5.221 26 C 0.030 3.970 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.204 0.796 36 H 0.169 0.831 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.179 0.821 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.908 -12.131 20.353 23.872 hybrid contribution 1.596 0.367 -0.769 1.810 sum -1.312 -11.764 19.584 22.883 Atomic orbital electron populations 1.22361 0.96247 1.01868 1.03016 1.21690 0.93946 0.84203 1.03090 1.48231 1.61444 1.13361 1.08401 1.19374 0.97279 0.92862 0.77771 1.21370 0.99379 1.30361 1.05989 0.92437 1.24920 0.97391 0.94780 0.96821 1.69910 1.34615 1.31110 1.17475 0.86550 0.84168 0.78215 0.78456 1.20214 1.21112 1.20116 1.17686 0.79115 0.86718 0.82533 1.90796 1.48743 1.15252 1.85594 1.22251 0.98937 1.01219 0.99775 1.24265 0.97295 0.87180 0.91856 1.68510 1.24586 1.22740 1.03541 1.20901 0.86106 0.91175 0.92568 1.18722 0.91452 0.94726 0.91622 1.22225 0.99022 0.99255 0.93787 1.21608 0.98401 0.94548 0.96429 1.22363 0.95033 0.99616 1.01011 1.22831 0.98007 0.96408 0.89091 1.67556 1.25019 1.04093 1.18358 1.68222 1.26710 1.07535 1.19655 1.23341 0.96084 0.91730 0.85858 0.92479 0.91060 0.91380 0.89437 0.91569 0.94479 0.93401 0.92531 0.79595 0.83146 0.84179 0.84410 0.82134 0.80008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 9.13 37.15 0.34 -1.94 16 2 C 0.09 1.49 5.60 -4.04 -0.02 1.47 16 3 N -0.58 -11.90 2.46 -176.21 -0.43 -12.33 16 4 C 0.25 6.16 5.22 -5.19 -0.03 6.13 16 5 C -0.53 -14.60 9.39 -34.44 -0.32 -14.92 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -25.86 13.29 55.43 0.74 -25.13 16 9 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.56 11.36 7.32 -12.37 -0.09 11.27 16 14 O -0.53 -12.84 16.56 5.31 0.09 -12.75 16 15 C -0.21 -3.56 5.12 -104.63 -0.54 -4.09 16 16 C 0.16 2.40 8.71 -16.81 -0.15 2.26 16 17 N -0.48 -7.49 10.07 -10.81 -0.11 -7.60 16 18 C 0.36 5.41 7.57 -156.82 -1.19 4.22 16 19 C 0.17 2.28 6.75 -82.96 -0.56 1.72 16 20 C -0.12 -1.25 9.60 -39.09 -0.38 -1.62 16 21 C -0.08 -0.63 10.17 -39.31 -0.40 -1.03 16 22 C -0.16 -1.09 10.11 -39.35 -0.40 -1.49 16 23 C 0.10 0.85 11.18 -17.57 -0.20 0.66 16 24 N -0.44 -5.66 10.02 -9.77 -0.10 -5.76 16 25 N -0.51 -7.49 9.39 -10.81 -0.10 -7.59 16 26 C 0.20 3.03 11.00 -16.81 -0.18 2.84 16 27 H 0.06 0.71 6.38 -51.93 -0.33 0.38 16 28 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.09 1.42 8.12 -51.93 -0.42 0.99 16 31 H 0.07 0.95 5.07 -51.93 -0.26 0.69 16 32 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 33 H 0.05 1.36 7.35 -51.93 -0.38 0.97 16 34 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.19 2.46 3.74 -52.49 -0.20 2.26 16 36 H 0.15 1.45 7.49 -52.49 -0.39 1.05 16 37 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 39 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.18 2.55 8.06 -52.48 -0.42 2.12 16 LS Contribution 345.83 15.07 5.21 5.21 Total: -1.00 -33.77 345.83 -8.42 -42.20 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -4.49 Total: 0.25 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: -4.21 Total: 7.15 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -0.01 Total: -58.41 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.09 Total: -12.75 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.77 -8.42 -42.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930463959.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.503 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds