Wall clock time and date at job start Tue Mar 31 2020 11:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35594 * 117.00352 * 2 1 4 4 C 1.38518 * 120.08642 * 359.97438 * 3 2 1 5 5 C 1.38024 * 120.31103 * 180.02562 * 4 3 2 6 6 C 1.39930 * 120.47391 * 359.97438 * 5 4 3 7 7 C 1.48364 * 119.92214 * 180.02562 * 6 5 4 8 8 C 1.39377 * 120.12469 * 174.35408 * 7 6 5 9 9 C 1.37989 * 119.87564 * 179.69690 * 8 7 6 10 10 C 1.38343 * 120.12431 * 0.57165 * 9 8 7 11 11 C 1.38299 * 120.24512 * 359.72334 * 10 9 8 12 12 C 1.50704 * 119.94011 * 179.97438 * 11 10 9 13 13 C 1.53007 * 109.46937 * 329.98188 * 12 11 10 14 14 C 1.53002 * 109.47060 * 89.97516 * 12 11 10 15 15 O 1.42901 * 109.47381 * 209.97862 * 12 11 10 16 16 C 1.38032 * 120.12640 * 359.97438 * 11 10 9 17 17 C 1.38620 * 120.15823 * 0.04732 * 6 5 4 18 18 C 1.40519 * 119.68888 * 0.22724 * 17 6 5 19 19 C 1.41187 * 120.23522 * 179.75247 * 18 17 6 20 20 H 1.07988 * 120.00682 * 151.27200 * 19 18 17 21 21 C 1.39907 * 119.99273 * 331.27140 * 19 18 17 22 22 N 1.30876 * 120.00072 * 161.27506 * 21 19 18 23 23 Si 1.86803 * 120.00403 * 341.27520 * 21 19 18 24 24 H 1.48500 * 109.47284 * 90.58317 * 23 21 19 25 25 H 1.48501 * 109.47287 * 210.58489 * 23 21 19 26 26 H 1.48502 * 109.46917 * 330.58744 * 23 21 19 27 27 H 1.08998 * 109.47733 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46740 * 300.00341 * 1 2 3 29 29 H 1.09008 * 109.47376 * 59.99520 * 1 2 3 30 30 H 1.07998 * 119.84433 * 0.02696 * 4 3 2 31 31 H 1.08000 * 119.76226 * 180.02562 * 5 4 3 32 32 H 1.08007 * 120.05906 * 359.97438 * 8 7 6 33 33 H 1.08004 * 119.93950 * 180.29461 * 9 8 7 34 34 H 1.08002 * 119.87965 * 179.69487 * 10 9 8 35 35 H 1.08991 * 109.47348 * 59.99632 * 13 12 11 36 36 H 1.09000 * 109.46855 * 180.02562 * 13 12 11 37 37 H 1.09007 * 109.46893 * 299.99341 * 13 12 11 38 38 H 1.09001 * 109.46752 * 60.00208 * 14 12 11 39 39 H 1.09000 * 109.46968 * 179.97438 * 14 12 11 40 40 H 1.09001 * 109.47153 * 300.00377 * 14 12 11 41 41 H 0.96694 * 114.00008 * 300.00025 * 15 12 11 42 42 H 1.07999 * 120.06328 * 179.97438 * 16 11 10 43 43 H 1.07999 * 120.15631 * 179.97438 * 17 6 5 44 44 H 0.96995 * 120.00557 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2081 0.0000 4 6 1.2920 2.3710 -0.0005 5 6 1.9139 3.6032 -0.0011 6 6 3.3103 3.6934 -0.0005 7 6 3.9659 5.0243 -0.0005 8 6 5.3512 5.1216 0.1186 9 6 5.9562 6.3618 0.1117 10 6 5.1895 7.5078 -0.0013 11 6 3.8140 7.4174 -0.1136 12 6 2.9854 8.6702 -0.2357 13 6 3.6824 9.8164 0.5002 14 6 2.8267 9.0348 -1.7132 15 8 1.6971 8.4474 0.3410 16 6 3.1987 6.1818 -0.1141 17 6 4.0825 2.5422 -0.0005 18 6 3.4564 1.2842 -0.0058 19 6 4.2317 0.1043 -0.0110 20 1 3.8430 -0.7993 0.4347 21 6 5.5037 0.1058 -0.5937 22 7 6.3622 -0.8353 -0.2934 23 14 5.9768 1.4510 -1.8004 24 1 6.5988 2.5804 -1.0637 25 1 6.9451 0.9114 -2.7886 26 1 4.7625 1.9305 -2.5081 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 0.2136 2.3132 -0.0005 31 1 1.3184 4.5042 -0.0011 32 1 5.9503 4.2278 0.2116 33 1 7.0300 6.4382 0.1991 34 1 5.6667 8.4766 -0.0013 35 1 4.6650 9.9864 0.0604 36 1 3.0828 10.7224 0.4123 37 1 3.7954 9.5567 1.5529 38 1 2.3303 8.2182 -2.2375 39 1 2.2270 9.9407 -1.8015 40 1 3.8094 9.2047 -2.1531 41 1 1.1973 7.7329 -0.0771 42 1 2.1245 6.1124 -0.2015 43 1 5.1602 2.6118 -0.0005 44 1 7.2441 -0.8342 -0.6970 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240407303.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:25 Heat of formation + Delta-G solvation = -48.755037 kcal Electronic energy + Delta-G solvation = -25557.534229 eV Core-core repulsion = 22018.549200 eV Total energy + Delta-G solvation = -3538.985029 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.151 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.93343 -38.89025 -37.42469 -36.10588 -33.80882 -32.89256 -31.39277 -30.53213 -29.98447 -27.96520 -27.38012 -26.57561 -25.17635 -23.21367 -22.46619 -21.37901 -20.44687 -19.40853 -17.87998 -17.19488 -17.10175 -15.89471 -15.56423 -15.19131 -15.01507 -14.82957 -14.74701 -14.07649 -13.83816 -13.67851 -13.63748 -13.22714 -13.04333 -12.59406 -12.45864 -12.37686 -12.20417 -12.07023 -11.88491 -11.80835 -11.45721 -11.34298 -11.20499 -10.90940 -10.87357 -10.71493 -10.49450 -10.28459 -10.08801 -9.77793 -9.65312 -9.17542 -8.68384 -8.53881 -7.81270 -6.97245 -6.90556 -4.41574 1.31605 1.61477 2.49626 2.69418 3.05708 3.17910 3.28851 3.94160 3.97311 4.20815 4.29416 4.54378 4.57375 4.77922 4.89743 5.14704 5.17830 5.31688 5.40039 5.45031 5.56562 5.57104 5.61874 5.62788 5.69550 5.77878 5.81031 5.82585 5.94241 5.95564 5.98906 6.06544 6.18953 6.27236 6.46707 6.61915 6.68324 6.74384 6.78661 6.97137 7.13028 7.21467 7.37134 7.48806 7.55259 7.70678 7.90395 8.16537 8.37146 8.74345 8.76429 10.05824 Molecular weight = 312.15amu Principal moments of inertia in cm(-1) A = 0.014540 B = 0.004462 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.241760 B = 6273.308031 C = 7786.598243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.306 6.306 3 C 0.041 3.959 4 C -0.174 4.174 5 C -0.191 4.191 6 C -0.048 4.048 7 C -0.008 4.008 8 C -0.122 4.122 9 C -0.115 4.115 10 C -0.131 4.131 11 C -0.112 4.112 12 C 0.170 3.830 13 C -0.137 4.137 14 C -0.173 4.173 15 O -0.557 6.557 16 C -0.113 4.113 17 C -0.209 4.209 18 C 0.078 3.922 19 C -0.429 4.429 20 H 0.097 0.903 21 C 0.083 3.917 22 N -0.805 5.805 23 Si 0.905 3.095 24 H -0.266 1.266 25 H -0.290 1.290 26 H -0.247 1.247 27 H 0.085 0.915 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.126 0.874 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.376 0.624 42 H 0.121 0.879 43 H 0.114 0.886 44 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.391 14.881 -2.054 15.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.220 6.220 3 C -0.004 4.004 4 C -0.193 4.193 5 C -0.210 4.210 6 C -0.048 4.048 7 C -0.008 4.008 8 C -0.140 4.140 9 C -0.133 4.133 10 C -0.149 4.149 11 C -0.113 4.113 12 C 0.129 3.871 13 C -0.194 4.194 14 C -0.231 4.231 15 O -0.363 6.363 16 C -0.131 4.131 17 C -0.229 4.229 18 C 0.075 3.925 19 C -0.457 4.457 20 H 0.115 0.885 21 C -0.135 4.135 22 N -0.429 5.429 23 Si 0.732 3.268 24 H -0.192 1.192 25 H -0.217 1.217 26 H -0.170 1.170 27 H 0.104 0.896 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.144 0.856 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.225 0.775 42 H 0.139 0.861 43 H 0.131 0.869 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.873 14.989 -1.679 15.572 hybrid contribution -0.045 0.037 -0.889 0.891 sum -3.918 15.026 -2.568 15.740 Atomic orbital electron populations 1.22811 0.81235 1.02219 1.00111 1.86010 1.18618 1.27839 1.89516 1.19264 0.92091 0.82944 1.06119 1.20630 0.97867 0.92573 1.08234 1.20151 0.92714 0.95669 1.12512 1.18275 0.93002 0.90436 1.03071 1.19032 0.92791 0.92921 0.96103 1.21467 0.94522 0.97913 1.00101 1.21026 0.99530 0.92380 1.00371 1.20909 0.93012 0.98237 1.02748 1.20288 0.94569 0.94749 1.01645 1.19966 0.82611 0.91984 0.92501 1.21804 0.99775 0.96683 1.01108 1.22480 1.02826 1.02162 0.95595 1.86547 1.28937 1.58481 1.62384 1.20887 0.99555 0.91070 1.01588 1.20936 0.98258 0.91004 1.12657 1.17062 0.88478 0.93307 0.93677 1.19329 0.97555 0.97474 1.31354 0.88532 1.26133 0.94986 0.96232 0.96189 1.69707 1.05730 1.31902 1.35532 0.86466 0.79653 0.80250 0.80409 1.19200 1.21728 1.16983 0.89648 0.93922 0.93909 0.87752 0.88247 0.85597 0.86274 0.86302 0.90900 0.91870 0.91607 0.92053 0.91684 0.91413 0.77534 0.86135 0.86858 0.90405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.81 101.05 0.99 1.50 16 2 O -0.31 -6.81 9.81 -18.48 -0.18 -6.99 16 3 C 0.04 0.96 6.72 -38.28 -0.26 0.70 16 4 C -0.17 -3.58 9.01 -39.56 -0.36 -3.94 16 5 C -0.19 -3.85 9.42 -39.03 -0.37 -4.22 16 6 C -0.05 -1.03 5.86 -104.95 -0.62 -1.64 16 7 C -0.01 -0.16 5.87 -104.90 -0.62 -0.78 16 8 C -0.12 -2.21 9.41 -39.25 -0.37 -2.58 16 9 C -0.12 -1.72 10.03 -39.63 -0.40 -2.12 16 10 C -0.13 -1.77 9.14 -39.52 -0.36 -2.13 16 11 C -0.11 -1.57 4.84 -104.67 -0.51 -2.08 16 12 C 0.17 1.98 1.26 -91.76 -0.12 1.86 16 13 C -0.14 -1.38 8.15 37.16 0.30 -1.08 16 14 C -0.17 -1.72 8.80 37.16 0.33 -1.39 16 15 O -0.56 -6.91 12.71 -35.23 -0.45 -7.36 16 16 C -0.11 -1.81 8.69 -39.25 -0.34 -2.15 16 17 C -0.21 -5.01 6.66 -38.58 -0.26 -5.26 16 18 C 0.08 2.00 5.14 -106.72 -0.55 1.45 16 19 C -0.43 -11.75 9.20 -37.84 -0.35 -12.10 16 20 H 0.10 2.83 7.87 -52.49 -0.41 2.41 16 21 C 0.08 2.19 5.40 -17.33 -0.09 2.10 16 22 N -0.80 -21.42 13.93 55.55 0.77 -20.65 16 23 Si 0.91 20.76 24.56 -169.99 -4.18 16.58 16 24 H -0.27 -5.74 5.78 56.52 0.33 -5.41 16 25 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.25 -5.86 7.05 56.52 0.40 -5.46 16 27 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 29 H 0.04 0.62 7.66 -51.92 -0.40 0.22 16 30 H 0.10 1.82 6.27 -52.49 -0.33 1.49 16 31 H 0.10 1.70 6.21 -52.49 -0.33 1.37 16 32 H 0.13 2.40 5.57 -52.48 -0.29 2.10 16 33 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 34 H 0.12 1.27 6.15 -52.49 -0.32 0.95 16 35 H 0.07 0.61 6.50 -51.93 -0.34 0.28 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.38 3.75 7.32 45.56 0.33 4.08 16 42 H 0.12 1.72 4.64 -52.49 -0.24 1.47 16 43 H 0.11 2.69 2.73 -52.49 -0.14 2.55 16 44 H 0.29 6.87 8.30 -40.82 -0.34 6.53 16 LS Contribution 348.12 15.07 5.25 5.25 Total: -1.00 -29.69 348.12 -7.75 -37.45 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -5.04 Total: 9.60 kcal Atomic # 6 Polarization: -29.95 SS G_CDS: -3.93 Total: -33.88 kcal Atomic # 7 Polarization: -21.42 SS G_CDS: 0.77 Total: -20.65 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.63 Total: -14.34 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.18 Total: 16.58 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.69 -7.75 -37.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240407303.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.308 kcal (2) G-P(sol) polarization free energy of solvation -29.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds