Wall clock time and date at job start Tue Mar 31 2020 11:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35594 * 117.00352 * 2 1 4 4 C 1.38518 * 120.08642 * 359.97438 * 3 2 1 5 5 C 1.38024 * 120.31103 * 180.02562 * 4 3 2 6 6 C 1.39930 * 120.47391 * 359.97438 * 5 4 3 7 7 C 1.48364 * 119.92214 * 180.02562 * 6 5 4 8 8 C 1.39377 * 120.12469 * 174.35408 * 7 6 5 9 9 C 1.37989 * 119.87564 * 179.69690 * 8 7 6 10 10 C 1.38343 * 120.12431 * 0.57165 * 9 8 7 11 11 C 1.38299 * 120.24512 * 359.72334 * 10 9 8 12 12 C 1.50704 * 119.94011 * 179.97438 * 11 10 9 13 13 C 1.53007 * 109.46937 * 329.98188 * 12 11 10 14 14 C 1.53002 * 109.47060 * 89.97516 * 12 11 10 15 15 O 1.42901 * 109.47381 * 209.97862 * 12 11 10 16 16 C 1.38032 * 120.12640 * 359.97438 * 11 10 9 17 17 C 1.38620 * 120.15823 * 0.04732 * 6 5 4 18 18 C 1.40519 * 119.68888 * 0.22724 * 17 6 5 19 19 C 1.41187 * 120.23522 * 179.75247 * 18 17 6 20 20 H 1.07988 * 120.00682 * 151.27200 * 19 18 17 21 21 C 1.39907 * 119.99273 * 331.27140 * 19 18 17 22 22 N 1.30876 * 120.00072 * 161.27506 * 21 19 18 23 23 Si 1.86803 * 120.00403 * 341.27520 * 21 19 18 24 24 H 1.48500 * 109.47284 * 90.58317 * 23 21 19 25 25 H 1.48501 * 109.47287 * 210.58489 * 23 21 19 26 26 H 1.48502 * 109.46917 * 330.58744 * 23 21 19 27 27 H 1.08998 * 109.47733 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46740 * 300.00341 * 1 2 3 29 29 H 1.09008 * 109.47376 * 59.99520 * 1 2 3 30 30 H 1.07998 * 119.84433 * 0.02696 * 4 3 2 31 31 H 1.08000 * 119.76226 * 180.02562 * 5 4 3 32 32 H 1.08007 * 120.05906 * 359.97438 * 8 7 6 33 33 H 1.08004 * 119.93950 * 180.29461 * 9 8 7 34 34 H 1.08002 * 119.87965 * 179.69487 * 10 9 8 35 35 H 1.08991 * 109.47348 * 59.99632 * 13 12 11 36 36 H 1.09000 * 109.46855 * 180.02562 * 13 12 11 37 37 H 1.09007 * 109.46893 * 299.99341 * 13 12 11 38 38 H 1.09001 * 109.46752 * 60.00208 * 14 12 11 39 39 H 1.09000 * 109.46968 * 179.97438 * 14 12 11 40 40 H 1.09001 * 109.47153 * 300.00377 * 14 12 11 41 41 H 0.96694 * 114.00008 * 300.00025 * 15 12 11 42 42 H 1.07999 * 120.06328 * 179.97438 * 16 11 10 43 43 H 1.07999 * 120.15631 * 179.97438 * 17 6 5 44 44 H 0.96995 * 120.00557 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2081 0.0000 4 6 1.2920 2.3710 -0.0005 5 6 1.9139 3.6032 -0.0011 6 6 3.3103 3.6934 -0.0005 7 6 3.9659 5.0243 -0.0005 8 6 5.3512 5.1216 0.1186 9 6 5.9562 6.3618 0.1117 10 6 5.1895 7.5078 -0.0013 11 6 3.8140 7.4174 -0.1136 12 6 2.9854 8.6702 -0.2357 13 6 3.6824 9.8164 0.5002 14 6 2.8267 9.0348 -1.7132 15 8 1.6971 8.4474 0.3410 16 6 3.1987 6.1818 -0.1141 17 6 4.0825 2.5422 -0.0005 18 6 3.4564 1.2842 -0.0058 19 6 4.2317 0.1043 -0.0110 20 1 3.8430 -0.7993 0.4347 21 6 5.5037 0.1058 -0.5937 22 7 6.3622 -0.8353 -0.2934 23 14 5.9768 1.4510 -1.8004 24 1 6.5988 2.5804 -1.0637 25 1 6.9451 0.9114 -2.7886 26 1 4.7625 1.9305 -2.5081 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 0.2136 2.3132 -0.0005 31 1 1.3184 4.5042 -0.0011 32 1 5.9503 4.2278 0.2116 33 1 7.0300 6.4382 0.1991 34 1 5.6667 8.4766 -0.0013 35 1 4.6650 9.9864 0.0604 36 1 3.0828 10.7224 0.4123 37 1 3.7954 9.5567 1.5529 38 1 2.3303 8.2182 -2.2375 39 1 2.2270 9.9407 -1.8015 40 1 3.8094 9.2047 -2.1531 41 1 1.1973 7.7329 -0.0771 42 1 2.1245 6.1124 -0.2015 43 1 5.1602 2.6118 -0.0005 44 1 7.2441 -0.8342 -0.6970 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240407303.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:24 Heat of formation + Delta-G solvation = -67.321135 kcal Electronic energy + Delta-G solvation = -25558.339315 eV Core-core repulsion = 22018.549200 eV Total energy + Delta-G solvation = -3539.790116 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.151 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.15992 -40.43008 -38.65021 -37.56636 -35.63152 -33.97673 -32.89079 -32.09460 -31.19359 -29.28559 -28.28386 -27.97046 -26.93147 -24.47442 -23.83750 -22.84695 -21.86910 -20.64240 -19.46518 -18.86065 -18.46543 -17.15380 -17.04314 -16.69319 -16.32916 -16.18584 -16.01214 -15.44575 -15.29432 -14.92606 -14.86655 -14.70233 -14.31867 -14.04792 -13.87275 -13.62951 -13.34564 -13.17117 -13.06955 -12.92593 -12.84563 -12.65766 -12.54603 -12.47072 -12.37262 -12.00427 -11.79367 -11.77392 -11.55488 -11.45333 -11.01198 -10.93493 -10.04855 -9.72381 -9.63229 -8.90760 -8.52738 -6.40921 -0.06387 0.42373 0.70726 1.07372 1.19943 1.38314 1.41904 2.06914 2.50275 2.79119 2.90150 3.36695 3.48744 3.59019 3.79571 3.90189 4.07095 4.14071 4.15432 4.26056 4.32971 4.42256 4.47884 4.49805 4.55022 4.66128 4.74056 4.76718 4.80732 4.89906 4.95914 4.99446 5.04189 5.07989 5.16824 5.22381 5.25394 5.30854 5.49759 5.51414 5.59216 5.66199 5.70846 6.01957 6.06458 6.15034 6.27024 6.44417 6.77053 6.77275 7.04534 8.18861 Molecular weight = 312.15amu Principal moments of inertia in cm(-1) A = 0.014540 B = 0.004462 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.241760 B = 6273.308031 C = 7786.598243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.340 6.340 3 C 0.026 3.974 4 C -0.171 4.171 5 C -0.172 4.172 6 C -0.058 4.058 7 C -0.041 4.041 8 C -0.146 4.146 9 C -0.116 4.116 10 C -0.119 4.119 11 C -0.109 4.109 12 C 0.169 3.831 13 C -0.139 4.139 14 C -0.170 4.170 15 O -0.569 6.569 16 C -0.113 4.113 17 C -0.217 4.217 18 C 0.048 3.952 19 C -0.470 4.470 20 H 0.054 0.946 21 C 0.050 3.950 22 N -0.850 5.850 23 Si 0.956 3.044 24 H -0.250 1.250 25 H -0.275 1.275 26 H -0.262 1.262 27 H 0.109 0.891 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.144 0.856 31 H 0.140 0.860 32 H 0.104 0.896 33 H 0.144 0.856 34 H 0.155 0.845 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.385 0.615 42 H 0.137 0.863 43 H 0.107 0.893 44 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.920 19.680 -2.832 20.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.255 6.255 3 C -0.019 4.019 4 C -0.189 4.189 5 C -0.191 4.191 6 C -0.058 4.058 7 C -0.041 4.041 8 C -0.164 4.164 9 C -0.133 4.133 10 C -0.136 4.136 11 C -0.110 4.110 12 C 0.129 3.871 13 C -0.196 4.196 14 C -0.228 4.228 15 O -0.378 6.378 16 C -0.131 4.131 17 C -0.237 4.237 18 C 0.045 3.955 19 C -0.500 4.500 20 H 0.072 0.928 21 C -0.164 4.164 22 N -0.478 5.478 23 Si 0.780 3.220 24 H -0.176 1.176 25 H -0.202 1.202 26 H -0.186 1.186 27 H 0.127 0.873 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.161 0.839 31 H 0.158 0.842 32 H 0.122 0.878 33 H 0.162 0.838 34 H 0.173 0.827 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.235 0.765 42 H 0.155 0.845 43 H 0.124 0.876 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.420 19.788 -2.452 20.663 hybrid contribution 0.171 -1.204 -0.570 1.343 sum -5.249 18.584 -3.022 19.546 Atomic orbital electron populations 1.23188 0.77971 1.04503 1.01593 1.85972 1.22109 1.27831 1.89545 1.19492 0.91849 0.84501 1.06099 1.21053 0.99759 0.91529 1.06592 1.20732 0.92547 0.97081 1.08703 1.18648 0.93854 0.91203 1.02121 1.18994 0.93411 0.92458 0.99273 1.21481 0.94463 0.98645 1.01850 1.21313 1.01038 0.91536 0.99448 1.21359 0.92916 0.99237 1.00108 1.20676 0.95235 0.95108 0.99961 1.20119 0.82052 0.91100 0.93850 1.21873 1.00909 0.96418 1.00383 1.22457 1.03578 1.02615 0.94125 1.86544 1.29270 1.59002 1.62980 1.21051 1.00275 0.90790 1.00970 1.21034 0.98422 0.91452 1.12756 1.17292 0.89999 0.93265 0.94909 1.19189 0.99217 0.97072 1.34519 0.92778 1.26697 0.94586 0.98076 0.97052 1.69738 1.06508 1.33944 1.37564 0.85692 0.78958 0.78569 0.78757 1.17561 1.20157 1.18623 0.87295 0.92291 0.92192 0.83877 0.84191 0.87817 0.83839 0.82713 0.88911 0.90838 0.92674 0.92395 0.90409 0.90600 0.76502 0.84494 0.87552 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 9.81 113.37 1.11 1.78 16 2 O -0.34 -15.52 9.81 -89.03 -0.87 -16.39 16 3 C 0.03 1.23 6.72 23.11 0.16 1.38 16 4 C -0.17 -6.67 9.01 22.29 0.20 -6.47 16 5 C -0.17 -6.47 9.42 22.63 0.21 -6.26 16 6 C -0.06 -2.46 5.86 -20.08 -0.12 -2.58 16 7 C -0.04 -1.51 5.87 -20.04 -0.12 -1.62 16 8 C -0.15 -5.18 9.41 22.49 0.21 -4.97 16 9 C -0.12 -3.14 10.03 22.24 0.22 -2.91 16 10 C -0.12 -2.70 9.14 22.31 0.20 -2.50 16 11 C -0.11 -2.63 4.84 -19.90 -0.10 -2.72 16 12 C 0.17 3.19 1.26 -11.54 -0.01 3.18 16 13 C -0.14 -2.17 8.15 71.98 0.59 -1.58 16 14 C -0.17 -2.62 8.80 71.98 0.63 -1.98 16 15 O -0.57 -11.86 12.71 -148.98 -1.89 -13.75 16 16 C -0.11 -3.26 8.69 22.49 0.20 -3.06 16 17 C -0.22 -10.73 6.66 22.92 0.15 -10.58 16 18 C 0.05 2.58 5.14 -21.22 -0.11 2.47 16 19 C -0.47 -28.00 9.20 23.40 0.22 -27.78 16 20 H 0.05 3.53 7.87 -2.92 -0.02 3.51 16 21 C 0.05 2.79 5.40 85.24 0.46 3.25 16 22 N -0.85 -48.60 13.93 21.82 0.30 -48.29 16 23 Si 0.96 44.87 24.56 68.60 1.68 46.56 16 24 H -0.25 -10.93 5.78 99.48 0.58 -10.35 16 25 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 26 H -0.26 -12.75 7.05 99.48 0.70 -12.05 16 27 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 28 H 0.06 1.58 7.66 -2.39 -0.02 1.56 16 29 H 0.06 1.60 7.66 -2.38 -0.02 1.58 16 30 H 0.14 4.42 6.27 -2.91 -0.02 4.40 16 31 H 0.14 4.10 6.21 -2.91 -0.02 4.08 16 32 H 0.10 4.05 5.57 -2.91 -0.02 4.03 16 33 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 34 H 0.16 2.41 6.15 -2.91 -0.02 2.39 16 35 H 0.09 1.05 6.50 -2.39 -0.02 1.03 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.38 6.11 7.32 -74.06 -0.54 5.56 16 42 H 0.14 3.33 4.64 -2.91 -0.01 3.31 16 43 H 0.11 5.29 2.73 -2.91 -0.01 5.28 16 44 H 0.29 15.00 8.30 -92.71 -0.77 14.23 16 Total: -1.00 -70.56 348.12 3.69 -66.87 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 0.37 Total: 27.97 kcal Atomic # 6 Polarization: -67.07 SS G_CDS: 4.11 Total: -62.96 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.30 Total: -48.29 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -2.77 Total: -30.14 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.68 Total: 46.56 kcal Total: -70.56 3.69 -66.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240407303.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.454 kcal (2) G-P(sol) polarization free energy of solvation -70.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds