Wall clock time and date at job start Tue Mar 31 2020 11:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35678 * 116.99845 * 2 1 4 4 C 1.37985 * 120.19635 * 0.21247 * 3 2 1 5 5 C 1.39621 * 119.93099 * 180.27895 * 4 3 2 6 6 C 1.48033 * 119.83551 * 179.74112 * 5 4 3 7 7 C 1.39595 * 120.14085 * 359.74509 * 6 5 4 8 8 C 1.37920 * 119.85439 * 179.74684 * 7 6 5 9 9 C 1.38405 * 120.14062 * 0.50593 * 8 7 6 10 10 C 1.38358 * 120.28686 * 359.77233 * 9 8 7 11 11 C 1.50706 * 119.92897 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47070 * 329.97652 * 11 10 9 13 13 C 1.53003 * 109.47238 * 89.97218 * 11 10 9 14 14 O 1.42895 * 109.46983 * 209.97554 * 11 10 9 15 15 C 1.37967 * 120.14365 * 359.97226 * 10 9 8 16 16 C 1.40074 * 120.32299 * 359.76213 * 5 4 3 17 17 C 1.36109 * 120.39976 * 359.97263 * 16 5 4 18 18 C 1.40913 * 120.05717 * 0.02948 * 17 16 5 19 19 C 1.40839 * 120.15968 * 179.97438 * 18 17 16 20 20 H 1.07994 * 119.99783 * 205.53968 * 19 18 17 21 21 C 1.40001 * 119.99973 * 25.54517 * 19 18 17 22 22 N 1.30834 * 120.00012 * 17.25388 * 21 19 18 23 23 Si 1.86797 * 119.99802 * 197.26077 * 21 19 18 24 24 H 1.48506 * 109.47023 * 265.18671 * 23 21 19 25 25 H 1.48501 * 109.47350 * 25.18731 * 23 21 19 26 26 H 1.48503 * 109.47338 * 145.19076 * 23 21 19 27 27 H 1.09005 * 109.46767 * 299.99931 * 1 2 3 28 28 H 1.08992 * 109.47203 * 60.00163 * 1 2 3 29 29 H 1.08996 * 109.46727 * 180.02562 * 1 2 3 30 30 H 1.07996 * 120.03165 * 0.02562 * 4 3 2 31 31 H 1.07998 * 120.07146 * 359.97438 * 7 6 5 32 32 H 1.07999 * 119.93023 * 180.23453 * 8 7 6 33 33 H 1.08001 * 119.85659 * 179.74313 * 9 8 7 34 34 H 1.09008 * 109.47394 * 59.99791 * 12 11 10 35 35 H 1.08996 * 109.47610 * 179.97438 * 12 11 10 36 36 H 1.09000 * 109.47381 * 300.00300 * 12 11 10 37 37 H 1.09003 * 109.46936 * 59.99555 * 13 11 10 38 38 H 1.08992 * 109.47183 * 180.02562 * 13 11 10 39 39 H 1.09002 * 109.47096 * 300.00589 * 13 11 10 40 40 H 0.96696 * 114.00080 * 299.99638 * 14 11 10 41 41 H 1.07997 * 120.07347 * 179.97438 * 15 10 9 42 42 H 1.08002 * 119.79705 * 180.02562 * 16 5 4 43 43 H 1.07997 * 119.97395 * 180.02562 * 17 16 5 44 44 H 0.97002 * 119.99830 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2973 2.3687 0.0044 5 6 1.9369 3.6098 -0.0015 6 6 1.1328 4.8527 -0.0025 7 6 -0.2615 4.7855 -0.0030 8 6 -1.0049 5.9472 0.0013 9 6 -0.3714 7.1777 -0.0045 10 6 1.0103 7.2511 -0.0099 11 6 1.6917 8.5953 -0.0167 12 6 0.8057 9.6126 -0.7385 13 6 1.9271 9.0552 1.4234 14 8 2.9455 8.4902 -0.6942 15 6 1.7655 6.0965 -0.0089 16 6 3.3356 3.6846 -0.0069 17 6 4.0861 2.5491 -0.0059 18 6 3.4577 1.2878 0.0000 19 6 4.2321 0.1114 0.0005 20 1 3.8227 -0.8047 -0.3986 21 6 5.5326 0.1297 0.5186 22 7 5.9137 1.1113 1.2952 23 14 6.7238 -1.2471 0.1007 24 1 6.6876 -2.2751 1.1719 25 1 6.3327 -1.8650 -1.1917 26 1 8.0984 -0.6960 -0.0100 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0276 0.0005 30 1 0.2187 2.3164 0.0083 31 1 -0.7570 3.8258 -0.0030 32 1 -2.0837 5.8965 0.0048 33 1 -0.9580 8.0845 -0.0053 34 1 -0.1508 9.6928 -0.2217 35 1 1.2983 10.5849 -0.7431 36 1 0.6379 9.2851 -1.7645 37 1 2.5583 8.3304 1.9377 38 1 2.4196 10.0275 1.4184 39 1 0.9707 9.1352 1.9402 40 1 3.5591 7.8613 -0.2906 41 1 2.8438 6.1552 -0.0136 42 1 3.8215 4.6491 -0.0110 43 1 5.1640 2.6147 -0.0096 44 1 6.8149 1.1241 1.6538 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240407395.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:05 Heat of formation + Delta-G solvation = -52.944385 kcal Electronic energy + Delta-G solvation = -25282.524327 eV Core-core repulsion = 21743.357634 eV Total energy + Delta-G solvation = -3539.166693 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.151 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.73628 -38.70608 -37.15003 -36.02535 -34.05885 -32.69435 -31.14096 -30.12068 -28.95859 -28.47664 -27.37924 -26.60768 -25.08567 -23.01211 -22.28053 -21.09016 -20.07679 -19.51349 -17.83320 -17.41023 -16.25375 -15.80233 -15.57348 -15.11121 -14.85755 -14.70795 -14.50644 -14.14760 -13.73417 -13.60755 -13.31184 -13.07621 -12.87832 -12.42789 -12.41309 -12.19233 -12.13625 -11.83265 -11.79324 -11.55022 -11.36236 -11.29069 -11.06752 -10.97905 -10.76551 -10.69780 -10.49386 -10.13119 -9.94765 -9.70627 -9.62855 -9.37009 -8.53228 -8.40056 -7.35263 -7.09332 -6.85028 -4.35029 1.50611 1.78319 2.73937 2.95493 3.00330 3.04952 3.13860 3.82116 4.11339 4.33394 4.43424 4.63687 4.72089 4.91314 5.02383 5.29210 5.35287 5.50454 5.54543 5.55850 5.67180 5.70962 5.73420 5.75004 5.77992 5.89790 5.93738 5.96554 6.06958 6.09606 6.16970 6.23555 6.39045 6.51291 6.71548 6.85987 6.89237 6.91752 6.99794 7.20365 7.25403 7.41401 7.60827 7.68272 7.70249 7.96353 8.04674 8.28803 8.52328 8.64671 8.93368 9.98104 Molecular weight = 312.15amu Principal moments of inertia in cm(-1) A = 0.016391 B = 0.003606 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.893027 B = 7762.632010 C = 9214.109799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.313 6.313 3 C 0.006 3.994 4 C -0.148 4.148 5 C -0.179 4.179 6 C 0.027 3.973 7 C -0.146 4.146 8 C -0.109 4.109 9 C -0.155 4.155 10 C -0.101 4.101 11 C 0.169 3.831 12 C -0.135 4.135 13 C -0.173 4.173 14 O -0.558 6.558 15 C -0.135 4.135 16 C -0.091 4.091 17 C -0.157 4.157 18 C 0.110 3.890 19 C -0.426 4.426 20 H 0.087 0.913 21 C 0.071 3.929 22 N -0.779 5.779 23 Si 0.913 3.087 24 H -0.268 1.268 25 H -0.258 1.258 26 H -0.274 1.274 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.377 0.623 41 H 0.117 0.883 42 H 0.093 0.907 43 H 0.125 0.875 44 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.170 9.097 -0.342 11.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.227 6.227 3 C -0.038 4.038 4 C -0.168 4.168 5 C -0.180 4.180 6 C 0.027 3.973 7 C -0.164 4.164 8 C -0.127 4.127 9 C -0.173 4.173 10 C -0.102 4.102 11 C 0.128 3.872 12 C -0.192 4.192 13 C -0.230 4.230 14 O -0.365 6.365 15 C -0.153 4.153 16 C -0.110 4.110 17 C -0.176 4.176 18 C 0.106 3.894 19 C -0.454 4.454 20 H 0.105 0.895 21 C -0.149 4.149 22 N -0.403 5.403 23 Si 0.737 3.263 24 H -0.194 1.194 25 H -0.182 1.182 26 H -0.198 1.198 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.119 0.881 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.226 0.774 41 H 0.135 0.865 42 H 0.111 0.889 43 H 0.143 0.857 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.136 9.422 -0.575 11.833 hybrid contribution 0.447 -0.901 0.404 1.084 sum -6.688 8.521 -0.171 10.834 Atomic orbital electron populations 1.22741 0.81657 1.01845 0.99954 1.85964 1.18284 1.28065 1.90414 1.19060 0.92273 0.82694 1.09771 1.20672 0.97388 0.92011 1.06682 1.17779 0.92377 0.90050 1.17819 1.18913 0.92478 0.92694 0.93199 1.21164 0.93588 0.97863 1.03826 1.20914 0.98987 0.92575 1.00224 1.20768 0.93535 0.97288 1.05701 1.20240 0.94276 0.94800 1.00858 1.19966 0.83953 0.91673 0.91596 1.21787 0.98439 0.97908 1.01095 1.22470 1.02678 1.01789 0.96065 1.86528 1.26247 1.66481 1.57234 1.20849 0.99342 0.91260 1.03822 1.20443 0.92434 0.97296 1.00783 1.20745 0.99665 0.90508 1.06692 1.17169 0.87445 0.94112 0.90641 1.19605 0.96611 0.96984 1.32224 0.89466 1.26034 0.98942 0.97200 0.92695 1.69822 1.19521 1.30174 1.20832 0.86203 0.78962 0.80786 0.80357 1.19357 1.18154 1.19841 0.94137 0.94188 0.89931 0.88097 0.86682 0.86937 0.86816 0.90996 0.92012 0.91707 0.91998 0.91805 0.91525 0.77389 0.86479 0.88881 0.85705 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.81 101.05 0.99 1.56 16 2 O -0.31 -7.07 9.78 -18.74 -0.18 -7.26 16 3 C 0.01 0.15 6.71 -38.43 -0.26 -0.11 16 4 C -0.15 -3.29 8.40 -39.16 -0.33 -3.62 16 5 C -0.18 -3.93 5.89 -104.68 -0.62 -4.54 16 6 C 0.03 0.52 5.88 -104.89 -0.62 -0.09 16 7 C -0.15 -2.52 9.42 -39.19 -0.37 -2.89 16 8 C -0.11 -1.61 10.03 -39.64 -0.40 -2.01 16 9 C -0.15 -2.20 9.14 -39.48 -0.36 -2.56 16 10 C -0.10 -1.53 4.84 -104.67 -0.51 -2.03 16 11 C 0.17 2.17 1.26 -91.77 -0.12 2.05 16 12 C -0.14 -1.50 8.15 37.16 0.30 -1.19 16 13 C -0.17 -1.92 8.80 37.16 0.33 -1.59 16 14 O -0.56 -7.73 12.71 -35.23 -0.45 -8.18 16 15 C -0.13 -2.32 8.69 -39.19 -0.34 -2.66 16 16 C -0.09 -2.06 9.35 -39.66 -0.37 -2.43 16 17 C -0.16 -3.89 8.61 -39.33 -0.34 -4.23 16 18 C 0.11 2.85 5.58 -106.66 -0.59 2.26 16 19 C -0.43 -11.03 8.70 -37.94 -0.33 -11.36 16 20 H 0.09 2.24 7.65 -52.49 -0.40 1.83 16 21 C 0.07 1.70 5.14 -17.32 -0.09 1.61 16 22 N -0.78 -19.12 10.98 55.55 0.61 -18.51 16 23 Si 0.91 17.94 29.59 -169.99 -5.03 12.91 16 24 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 25 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 26 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 27 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 28 H 0.04 0.62 7.67 -51.93 -0.40 0.22 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.10 1.97 4.41 -52.49 -0.23 1.74 16 31 H 0.12 1.88 6.18 -52.49 -0.32 1.56 16 32 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.11 1.31 6.15 -52.49 -0.32 0.99 16 34 H 0.07 0.67 6.50 -51.92 -0.34 0.33 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.38 4.43 7.32 45.56 0.33 4.76 16 41 H 0.12 1.90 4.60 -52.49 -0.24 1.66 16 42 H 0.09 1.86 6.16 -52.49 -0.32 1.54 16 43 H 0.13 3.15 6.19 -52.49 -0.32 2.83 16 44 H 0.28 6.29 8.30 -40.82 -0.34 5.96 16 LS Contribution 354.46 15.07 5.34 5.34 Total: -1.00 -28.45 354.46 -8.79 -37.23 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -5.06 Total: 12.30 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: -4.01 Total: -33.84 kcal Atomic # 7 Polarization: -19.12 SS G_CDS: 0.61 Total: -18.51 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.63 Total: -15.44 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.45 -8.79 -37.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240407395.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.710 kcal (2) G-P(sol) polarization free energy of solvation -28.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds