Wall clock time and date at job start Tue Mar 31 2020 11:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35678 * 116.99845 * 2 1 4 4 C 1.37985 * 120.19635 * 0.21247 * 3 2 1 5 5 C 1.39621 * 119.93099 * 180.27895 * 4 3 2 6 6 C 1.48033 * 119.83551 * 179.74112 * 5 4 3 7 7 C 1.39595 * 120.14085 * 359.74509 * 6 5 4 8 8 C 1.37920 * 119.85439 * 179.74684 * 7 6 5 9 9 C 1.38405 * 120.14062 * 0.50593 * 8 7 6 10 10 C 1.38358 * 120.28686 * 359.77233 * 9 8 7 11 11 C 1.50706 * 119.92897 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47070 * 329.97652 * 11 10 9 13 13 C 1.53003 * 109.47238 * 89.97218 * 11 10 9 14 14 O 1.42895 * 109.46983 * 209.97554 * 11 10 9 15 15 C 1.37967 * 120.14365 * 359.97226 * 10 9 8 16 16 C 1.40074 * 120.32299 * 359.76213 * 5 4 3 17 17 C 1.36109 * 120.39976 * 359.97263 * 16 5 4 18 18 C 1.40913 * 120.05717 * 0.02948 * 17 16 5 19 19 C 1.40839 * 120.15968 * 179.97438 * 18 17 16 20 20 H 1.07994 * 119.99783 * 205.53968 * 19 18 17 21 21 C 1.40001 * 119.99973 * 25.54517 * 19 18 17 22 22 N 1.30834 * 120.00012 * 17.25388 * 21 19 18 23 23 Si 1.86797 * 119.99802 * 197.26077 * 21 19 18 24 24 H 1.48506 * 109.47023 * 265.18671 * 23 21 19 25 25 H 1.48501 * 109.47350 * 25.18731 * 23 21 19 26 26 H 1.48503 * 109.47338 * 145.19076 * 23 21 19 27 27 H 1.09005 * 109.46767 * 299.99931 * 1 2 3 28 28 H 1.08992 * 109.47203 * 60.00163 * 1 2 3 29 29 H 1.08996 * 109.46727 * 180.02562 * 1 2 3 30 30 H 1.07996 * 120.03165 * 0.02562 * 4 3 2 31 31 H 1.07998 * 120.07146 * 359.97438 * 7 6 5 32 32 H 1.07999 * 119.93023 * 180.23453 * 8 7 6 33 33 H 1.08001 * 119.85659 * 179.74313 * 9 8 7 34 34 H 1.09008 * 109.47394 * 59.99791 * 12 11 10 35 35 H 1.08996 * 109.47610 * 179.97438 * 12 11 10 36 36 H 1.09000 * 109.47381 * 300.00300 * 12 11 10 37 37 H 1.09003 * 109.46936 * 59.99555 * 13 11 10 38 38 H 1.08992 * 109.47183 * 180.02562 * 13 11 10 39 39 H 1.09002 * 109.47096 * 300.00589 * 13 11 10 40 40 H 0.96696 * 114.00080 * 299.99638 * 14 11 10 41 41 H 1.07997 * 120.07347 * 179.97438 * 15 10 9 42 42 H 1.08002 * 119.79705 * 180.02562 * 16 5 4 43 43 H 1.07997 * 119.97395 * 180.02562 * 17 16 5 44 44 H 0.97002 * 119.99830 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2973 2.3687 0.0044 5 6 1.9369 3.6098 -0.0015 6 6 1.1328 4.8527 -0.0025 7 6 -0.2615 4.7855 -0.0030 8 6 -1.0049 5.9472 0.0013 9 6 -0.3714 7.1777 -0.0045 10 6 1.0103 7.2511 -0.0099 11 6 1.6917 8.5953 -0.0167 12 6 0.8057 9.6126 -0.7385 13 6 1.9271 9.0552 1.4234 14 8 2.9455 8.4902 -0.6942 15 6 1.7655 6.0965 -0.0089 16 6 3.3356 3.6846 -0.0069 17 6 4.0861 2.5491 -0.0059 18 6 3.4577 1.2878 0.0000 19 6 4.2321 0.1114 0.0005 20 1 3.8227 -0.8047 -0.3986 21 6 5.5326 0.1297 0.5186 22 7 5.9137 1.1113 1.2952 23 14 6.7238 -1.2471 0.1007 24 1 6.6876 -2.2751 1.1719 25 1 6.3327 -1.8650 -1.1917 26 1 8.0984 -0.6960 -0.0100 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0276 0.0005 30 1 0.2187 2.3164 0.0083 31 1 -0.7570 3.8258 -0.0030 32 1 -2.0837 5.8965 0.0048 33 1 -0.9580 8.0845 -0.0053 34 1 -0.1508 9.6928 -0.2217 35 1 1.2983 10.5849 -0.7431 36 1 0.6379 9.2851 -1.7645 37 1 2.5583 8.3304 1.9377 38 1 2.4196 10.0275 1.4184 39 1 0.9707 9.1352 1.9402 40 1 3.5591 7.8613 -0.2906 41 1 2.8438 6.1552 -0.0136 42 1 3.8215 4.6491 -0.0110 43 1 5.1640 2.6147 -0.0096 44 1 6.8149 1.1241 1.6538 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240407395.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:04 Heat of formation + Delta-G solvation = -68.505074 kcal Electronic energy + Delta-G solvation = -25283.199089 eV Core-core repulsion = 21743.357634 eV Total energy + Delta-G solvation = -3539.841455 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.151 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.03462 -40.28421 -38.43740 -37.60785 -35.73286 -33.88316 -32.59609 -31.48568 -30.61669 -29.94355 -28.27609 -28.08375 -26.72883 -24.28021 -23.75061 -22.58428 -21.66934 -20.76514 -19.49472 -18.82533 -17.74709 -17.24032 -17.06695 -16.46681 -16.25879 -16.02160 -15.87865 -15.72059 -14.95914 -14.91176 -14.67419 -14.48689 -14.18436 -14.01248 -13.74352 -13.38573 -13.26352 -13.15187 -12.91039 -12.86251 -12.81720 -12.69788 -12.55589 -12.37105 -12.17379 -12.03828 -11.79019 -11.62936 -11.50823 -11.29713 -11.10466 -10.94151 -10.06850 -9.64429 -9.07118 -8.82542 -8.58660 -6.21814 0.07621 0.52943 1.10802 1.15631 1.37833 1.50919 1.56887 2.19693 2.61136 2.87641 3.04000 3.37142 3.65128 3.70126 3.89283 4.02770 4.10752 4.15521 4.20441 4.37884 4.45647 4.45952 4.53721 4.57371 4.64068 4.71824 4.75292 4.80236 4.89427 4.97895 5.01023 5.08584 5.15943 5.19859 5.23631 5.29431 5.34396 5.42301 5.57685 5.63499 5.70358 5.80683 5.91778 6.17551 6.22682 6.24154 6.47357 6.71856 6.72080 6.82551 7.18096 8.26800 Molecular weight = 312.15amu Principal moments of inertia in cm(-1) A = 0.016391 B = 0.003606 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.893027 B = 7762.632010 C = 9214.109799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.339 6.339 3 C -0.006 4.006 4 C -0.157 4.157 5 C -0.166 4.166 6 C -0.012 4.012 7 C -0.151 4.151 8 C -0.108 4.108 9 C -0.139 4.139 10 C -0.106 4.106 11 C 0.164 3.836 12 C -0.135 4.135 13 C -0.169 4.169 14 O -0.573 6.573 15 C -0.141 4.141 16 C -0.106 4.106 17 C -0.171 4.171 18 C 0.070 3.930 19 C -0.471 4.471 20 H 0.074 0.926 21 C 0.035 3.965 22 N -0.816 5.816 23 Si 0.983 3.017 24 H -0.263 1.263 25 H -0.260 1.260 26 H -0.261 1.261 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.113 0.887 30 H 0.128 0.872 31 H 0.120 0.880 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.383 0.617 41 H 0.117 0.883 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.610 11.447 -0.302 14.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.254 6.254 3 C -0.050 4.050 4 C -0.176 4.176 5 C -0.167 4.167 6 C -0.012 4.012 7 C -0.169 4.169 8 C -0.126 4.126 9 C -0.156 4.156 10 C -0.106 4.106 11 C 0.124 3.876 12 C -0.192 4.192 13 C -0.226 4.226 14 O -0.381 6.381 15 C -0.159 4.159 16 C -0.124 4.124 17 C -0.190 4.190 18 C 0.067 3.933 19 C -0.500 4.500 20 H 0.092 0.908 21 C -0.181 4.181 22 N -0.441 5.441 23 Si 0.803 3.197 24 H -0.187 1.187 25 H -0.184 1.184 26 H -0.185 1.185 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.131 0.869 30 H 0.145 0.855 31 H 0.138 0.862 32 H 0.166 0.834 33 H 0.168 0.832 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.232 0.768 41 H 0.134 0.866 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.599 11.785 -0.532 15.209 hybrid contribution 0.869 -1.299 0.380 1.608 sum -8.731 10.486 -0.153 13.646 Atomic orbital electron populations 1.23087 0.78686 1.04307 1.00847 1.85913 1.21440 1.27659 1.90378 1.19250 0.92229 0.83949 1.09585 1.20953 0.98689 0.91439 1.06538 1.18219 0.92462 0.91563 1.14470 1.18926 0.93459 0.92035 0.96782 1.21358 0.92824 0.99362 1.03352 1.21317 1.00754 0.91708 0.98798 1.21284 0.93344 0.98612 1.02384 1.20586 0.94989 0.95132 0.99909 1.20195 0.83642 0.90917 0.92885 1.21847 0.99201 0.97675 1.00508 1.22441 1.03327 1.02101 0.94774 1.86516 1.26901 1.66731 1.57974 1.20982 0.99770 0.91557 1.03556 1.20671 0.93151 0.97461 1.01154 1.20720 0.99270 0.91242 1.07801 1.17530 0.88871 0.94659 0.92260 1.19648 0.98430 0.96709 1.35177 0.90825 1.26783 0.99824 0.99615 0.91902 1.69856 1.20268 1.32044 1.21934 0.85177 0.76943 0.77731 0.79809 1.18723 1.18431 1.18529 0.93270 0.93006 0.86851 0.85488 0.86216 0.83392 0.83207 0.88679 0.91000 0.92699 0.92962 0.90524 0.90299 0.76770 0.86564 0.86968 0.87119 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 9.81 113.37 1.11 1.95 16 2 O -0.34 -15.82 9.78 -89.96 -0.88 -16.70 16 3 C -0.01 -0.29 6.71 23.01 0.15 -0.14 16 4 C -0.16 -7.08 8.40 22.54 0.19 -6.89 16 5 C -0.17 -7.39 5.89 -19.90 -0.12 -7.50 16 6 C -0.01 -0.45 5.88 -20.04 -0.12 -0.57 16 7 C -0.15 -4.82 9.42 22.52 0.21 -4.60 16 8 C -0.11 -2.72 10.03 22.23 0.22 -2.50 16 9 C -0.14 -3.28 9.14 22.34 0.20 -3.08 16 10 C -0.11 -2.87 4.84 -19.90 -0.10 -2.97 16 11 C 0.16 3.72 1.26 -11.54 -0.01 3.70 16 12 C -0.14 -2.46 8.15 71.98 0.59 -1.87 16 13 C -0.17 -3.23 8.80 71.98 0.63 -2.60 16 14 O -0.57 -14.94 12.71 -148.98 -1.89 -16.83 16 15 C -0.14 -4.67 8.69 22.52 0.20 -4.47 16 16 C -0.11 -4.99 9.35 22.22 0.21 -4.79 16 17 C -0.17 -9.05 8.61 22.43 0.19 -8.85 16 18 C 0.07 3.86 5.58 -21.18 -0.12 3.74 16 19 C -0.47 -26.11 8.70 23.33 0.20 -25.91 16 20 H 0.07 4.08 7.65 -2.91 -0.02 4.06 16 21 C 0.03 1.75 5.14 85.27 0.44 2.19 16 22 N -0.82 -42.32 10.98 21.84 0.24 -42.08 16 23 Si 0.98 38.44 29.59 68.60 2.03 40.47 16 24 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 25 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 26 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 27 H 0.05 1.50 7.65 -2.38 -0.02 1.48 16 28 H 0.05 1.55 7.67 -2.39 -0.02 1.53 16 29 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 30 H 0.13 4.86 4.41 -2.91 -0.01 4.85 16 31 H 0.12 3.62 6.18 -2.91 -0.02 3.60 16 32 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 33 H 0.15 2.50 6.15 -2.91 -0.02 2.48 16 34 H 0.09 1.25 6.50 -2.38 -0.02 1.23 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.38 8.72 7.32 -74.06 -0.54 8.18 16 41 H 0.12 3.76 4.60 -2.91 -0.01 3.74 16 42 H 0.11 4.66 6.16 -2.91 -0.02 4.64 16 43 H 0.11 6.03 6.19 -2.91 -0.02 6.02 16 44 H 0.29 13.53 8.30 -92.71 -0.77 12.77 16 Total: -1.00 -65.77 354.46 4.08 -61.69 By element: Atomic # 1 Polarization: 38.09 SS G_CDS: 0.50 Total: 38.59 kcal Atomic # 6 Polarization: -69.23 SS G_CDS: 4.09 Total: -65.15 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.24 Total: -42.08 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -2.77 Total: -33.53 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Total: -65.77 4.08 -61.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240407395.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.816 kcal (2) G-P(sol) polarization free energy of solvation -65.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds