Wall clock time and date at job start Tue Mar 31 2020 10:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00458 * 2 1 4 4 H 1.48499 * 109.47311 * 270.00681 * 3 2 1 5 5 H 1.48508 * 109.46611 * 30.00473 * 3 2 1 6 6 H 1.48495 * 109.47239 * 150.00016 * 3 2 1 7 7 C 1.37877 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00313 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00030 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.91318 * 62.45304 * 9 7 2 11 11 C 1.55157 * 111.00498 * 186.35291 * 9 7 2 12 12 C 1.54336 * 103.01883 * 153.38392 * 11 9 7 13 13 N 1.47025 * 107.26682 * 338.13616 * 12 11 9 14 14 C 1.34778 * 125.64765 * 178.84797 * 13 12 11 15 15 O 1.21580 * 119.99722 * 179.69495 * 14 13 12 16 16 N 1.34770 * 120.00032 * 359.69766 * 14 13 12 17 17 C 1.46496 * 120.00080 * 179.97438 * 16 14 13 18 18 H 1.09001 * 110.53903 * 323.84285 * 17 16 14 19 19 C 1.54268 * 110.48921 * 86.45526 * 17 16 14 20 20 C 1.53869 * 106.60115 * 142.28956 * 19 17 16 21 21 C 1.54270 * 106.63967 * 359.97438 * 20 19 17 22 22 H 1.08997 * 110.48585 * 95.09409 * 21 20 19 23 23 C 1.50704 * 110.48466 * 217.73352 * 21 20 19 24 24 O 1.20827 * 119.99217 * 118.54647 * 23 21 20 25 25 O 1.34220 * 120.00412 * 298.54902 * 23 21 20 26 26 C 1.54895 * 110.48864 * 201.23194 * 17 16 14 27 27 C 1.47426 * 108.70156 * 358.59186 * 13 12 11 28 28 H 0.97003 * 119.99330 * 359.97438 * 1 2 3 29 29 H 0.96706 * 113.99740 * 297.54916 * 10 9 7 30 30 H 1.08999 * 110.72117 * 271.93886 * 11 9 7 31 31 H 1.08995 * 110.71996 * 35.03837 * 11 9 7 32 32 H 1.09008 * 109.98844 * 218.66766 * 12 11 9 33 33 H 1.08997 * 109.77998 * 97.49977 * 12 11 9 34 34 H 0.97001 * 120.00178 * 359.97438 * 16 14 13 35 35 H 1.08999 * 110.03048 * 23.00239 * 19 17 16 36 36 H 1.08996 * 110.03060 * 261.57828 * 19 17 16 37 37 H 1.09002 * 110.03268 * 119.28653 * 20 19 17 38 38 H 1.08995 * 110.03391 * 240.66959 * 20 19 17 39 39 H 0.96699 * 117.00168 * 180.02562 * 25 23 21 40 40 H 1.09001 * 110.75082 * 321.69036 * 26 17 16 41 41 H 1.08998 * 110.75665 * 85.06041 * 26 17 16 42 42 H 1.09002 * 110.36548 * 143.18982 * 27 13 12 43 43 H 1.08997 * 110.36146 * 265.51318 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.4608 -2.6320 -1.1838 11 6 2.2196 -3.7007 0.1591 12 6 1.3301 -4.7801 0.8113 13 7 0.2070 -4.0870 1.4593 14 6 -0.8057 -4.6808 2.1215 15 8 -1.6819 -4.0048 2.6250 16 7 -0.8470 -6.0239 2.2256 17 6 -1.9473 -6.6693 2.9458 18 1 -2.2458 -6.0691 3.8054 19 6 -3.1479 -6.8986 2.0045 20 6 -3.7569 -8.2574 2.3919 21 6 -2.9056 -8.8078 3.5548 22 1 -3.3587 -8.5535 4.5130 23 6 -2.7407 -10.3003 3.4274 24 8 -1.6382 -10.7772 3.2965 25 8 -3.8183 -11.0998 3.4593 26 6 -1.5393 -8.0944 3.3951 27 6 0.3752 -2.6347 1.2701 28 1 -0.4849 0.8401 0.0004 29 1 -0.2255 -1.9570 -1.2762 30 1 2.5844 -4.0337 -0.8126 31 1 3.0517 -3.4409 0.8135 32 1 1.9021 -5.3349 1.5552 33 1 0.9547 -5.4601 0.0467 34 1 -0.1481 -6.5632 1.8236 35 1 -2.8106 -6.9224 0.9683 36 1 -3.8848 -6.1069 2.1396 37 1 -4.7895 -8.1253 2.7151 38 1 -3.7160 -8.9405 1.5435 39 1 -3.6625 -12.0503 3.3742 40 1 -0.9364 -8.5828 2.6295 41 1 -1.0066 -8.0621 4.3455 42 1 -0.5927 -2.1575 1.1164 43 1 0.8830 -2.1966 2.1293 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:35 Heat of formation + Delta-G solvation = -176.719048 kcal Electronic energy + Delta-G solvation = -26489.826673 eV Core-core repulsion = 22534.443445 eV Total energy + Delta-G solvation = -3955.383228 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.85389 -39.73639 -38.16232 -36.97940 -36.38267 -34.20960 -33.42873 -32.21214 -30.18017 -29.31264 -28.29856 -27.54436 -24.96970 -23.44311 -22.60309 -20.66562 -20.58803 -19.62940 -19.36628 -18.33437 -17.54824 -17.26476 -17.01512 -16.38639 -15.69839 -15.22705 -15.06215 -14.97872 -14.40340 -14.31024 -13.73583 -13.54586 -13.32893 -13.07294 -12.81097 -12.47328 -12.21798 -12.05012 -11.93010 -11.70956 -11.64125 -11.54755 -11.38142 -11.19575 -11.02478 -10.87550 -10.80681 -10.59387 -10.53990 -10.45648 -10.17921 -9.59960 -9.34586 -8.83033 -8.67950 -8.33944 -7.67376 -6.25824 -4.35535 1.86296 2.63118 3.14900 3.23082 3.29807 3.32106 3.73052 4.09387 4.25483 4.28400 4.52567 4.61424 5.00048 5.01338 5.06627 5.15946 5.19798 5.25727 5.35751 5.42958 5.58455 5.66672 5.76797 5.79448 5.87121 6.01971 6.05230 6.11977 6.16074 6.19535 6.52783 6.72735 6.81316 6.90426 6.98864 7.25323 7.34712 7.54428 7.66669 7.76239 8.05459 8.55378 8.68876 9.15258 9.31848 9.40040 10.81152 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.035066 B = 0.002691 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.313884 B =10403.513021 C =10713.761036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.105 3.895 13 N -0.628 5.628 14 C 0.717 3.283 15 O -0.596 6.596 16 N -0.745 5.745 17 C 0.164 3.836 18 H 0.096 0.904 19 C -0.139 4.139 20 C -0.107 4.107 21 C -0.086 4.086 22 H 0.118 0.882 23 C 0.487 3.513 24 O -0.514 6.514 25 O -0.516 6.516 26 C -0.115 4.115 27 C 0.114 3.886 28 H 0.270 0.730 29 H 0.381 0.619 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.394 0.606 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.409 0.591 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.512 -18.378 5.871 20.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.084 0.916 9 C 0.207 3.793 10 O -0.391 6.391 11 C -0.154 4.154 12 C -0.019 4.019 13 N -0.365 5.365 14 C 0.419 3.581 15 O -0.475 6.475 16 N -0.401 5.401 17 C 0.058 3.942 18 H 0.114 0.886 19 C -0.178 4.178 20 C -0.145 4.145 21 C -0.105 4.105 22 H 0.136 0.864 23 C 0.329 3.671 24 O -0.402 6.402 25 O -0.327 6.327 26 C -0.153 4.153 27 C -0.008 4.008 28 H 0.080 0.920 29 H 0.231 0.769 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.228 0.772 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.268 0.732 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.740 -17.974 6.192 19.858 hybrid contribution 0.499 0.381 -0.113 0.638 sum -5.241 -17.593 6.079 19.338 Atomic orbital electron populations 1.69727 1.05957 1.27858 1.49454 1.25084 0.95044 0.99738 0.93393 0.86411 0.79768 0.82497 0.78262 1.20426 1.21026 1.19729 1.21451 0.93611 0.90058 1.52464 0.91567 1.19638 0.86657 0.91532 0.81441 1.86103 1.51486 1.57158 1.44374 1.22586 0.97549 0.95203 1.00055 1.21929 0.88325 0.96066 0.95542 1.47944 1.23252 1.09773 1.55503 1.15515 0.81814 0.81348 0.79436 1.90878 1.39677 1.63246 1.53696 1.45134 1.28603 1.05440 1.60924 1.21497 0.86104 0.91855 0.94781 0.88569 1.22641 0.98252 0.96267 1.00642 1.22065 0.99241 0.96941 0.96280 1.21839 0.99477 0.86213 1.03007 0.86371 1.23408 0.81654 0.90490 0.71515 1.90734 1.27172 1.76989 1.45266 1.84550 1.39225 1.23971 1.84992 1.22723 0.94917 0.94175 1.03449 1.23126 1.02527 0.75659 0.99486 0.92023 0.76944 0.90829 0.90447 0.93113 0.92689 0.77235 0.90803 0.90342 0.90160 0.91241 0.73239 0.89468 0.89886 0.89637 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.78 10.69 55.43 0.59 -23.18 16 2 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 3 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -13.90 8.27 -34.44 -0.28 -14.19 16 8 H 0.07 1.68 7.79 -52.49 -0.41 1.27 16 9 C 0.25 5.95 0.87 -89.62 -0.08 5.87 16 10 O -0.58 -14.75 13.16 -35.23 -0.46 -15.22 16 11 C -0.12 -2.27 6.13 -24.89 -0.15 -2.42 16 12 C 0.10 1.81 6.15 -3.06 -0.02 1.79 16 13 N -0.63 -12.90 3.33 -176.23 -0.59 -13.49 16 14 C 0.72 14.29 8.48 -86.92 -0.74 13.55 16 15 O -0.60 -14.08 16.31 5.29 0.09 -13.99 16 16 N -0.75 -10.90 5.07 -57.05 -0.29 -11.18 16 17 C 0.16 1.97 3.16 -66.27 -0.21 1.76 16 18 H 0.10 1.28 7.67 -51.93 -0.40 0.88 16 19 C -0.14 -1.54 6.53 -25.62 -0.17 -1.71 16 20 C -0.11 -0.88 6.34 -25.61 -0.16 -1.04 16 21 C -0.09 -0.69 3.37 -90.07 -0.30 -0.99 16 22 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 23 C 0.49 4.32 7.49 36.01 0.27 4.59 16 24 O -0.51 -6.15 16.52 -18.75 -0.31 -6.46 16 25 O -0.52 -3.36 13.40 -39.23 -0.53 -3.88 16 26 C -0.11 -1.08 5.50 -24.70 -0.14 -1.22 16 27 C 0.11 2.74 5.38 -2.53 -0.01 2.73 16 28 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.38 9.93 7.57 45.56 0.34 10.27 16 30 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 31 H 0.08 1.43 8.03 -51.93 -0.42 1.02 16 32 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.39 4.95 7.52 -40.82 -0.31 4.64 16 35 H 0.07 0.89 8.04 -51.93 -0.42 0.48 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.56 7.83 -51.93 -0.41 0.15 16 39 H 0.41 1.03 9.10 45.56 0.41 1.44 16 40 H 0.09 0.88 7.41 -51.93 -0.38 0.49 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.09 2.33 7.33 -51.93 -0.38 1.95 16 43 H 0.06 1.42 8.03 -51.93 -0.42 1.00 16 LS Contribution 353.93 15.07 5.33 5.33 Total: -1.00 -32.45 353.93 -8.14 -40.59 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -4.87 Total: 15.71 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: -2.09 Total: 10.48 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: -0.28 Total: -47.86 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -1.21 Total: -39.55 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.45 -8.14 -40.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.129 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds