Wall clock time and date at job start Tue Mar 31 2020 10:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00458 * 2 1 4 4 H 1.48499 * 109.47311 * 270.00681 * 3 2 1 5 5 H 1.48508 * 109.46611 * 30.00473 * 3 2 1 6 6 H 1.48495 * 109.47239 * 150.00016 * 3 2 1 7 7 C 1.37877 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00313 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00030 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.91318 * 62.45304 * 9 7 2 11 11 C 1.55157 * 111.00498 * 186.35291 * 9 7 2 12 12 C 1.54336 * 103.01883 * 153.38392 * 11 9 7 13 13 N 1.47025 * 107.26682 * 338.13616 * 12 11 9 14 14 C 1.34778 * 125.64765 * 178.84797 * 13 12 11 15 15 O 1.21580 * 119.99722 * 179.69495 * 14 13 12 16 16 N 1.34770 * 120.00032 * 359.69766 * 14 13 12 17 17 C 1.46496 * 120.00080 * 179.97438 * 16 14 13 18 18 H 1.09001 * 110.53903 * 323.84285 * 17 16 14 19 19 C 1.54268 * 110.48921 * 86.45526 * 17 16 14 20 20 C 1.53869 * 106.60115 * 142.28956 * 19 17 16 21 21 C 1.54270 * 106.63967 * 359.97438 * 20 19 17 22 22 H 1.08997 * 110.48585 * 95.09409 * 21 20 19 23 23 C 1.50704 * 110.48466 * 217.73352 * 21 20 19 24 24 O 1.20827 * 119.99217 * 118.54647 * 23 21 20 25 25 O 1.34220 * 120.00412 * 298.54902 * 23 21 20 26 26 C 1.54895 * 110.48864 * 201.23194 * 17 16 14 27 27 C 1.47426 * 108.70156 * 358.59186 * 13 12 11 28 28 H 0.97003 * 119.99330 * 359.97438 * 1 2 3 29 29 H 0.96706 * 113.99740 * 297.54916 * 10 9 7 30 30 H 1.08999 * 110.72117 * 271.93886 * 11 9 7 31 31 H 1.08995 * 110.71996 * 35.03837 * 11 9 7 32 32 H 1.09008 * 109.98844 * 218.66766 * 12 11 9 33 33 H 1.08997 * 109.77998 * 97.49977 * 12 11 9 34 34 H 0.97001 * 120.00178 * 359.97438 * 16 14 13 35 35 H 1.08999 * 110.03048 * 23.00239 * 19 17 16 36 36 H 1.08996 * 110.03060 * 261.57828 * 19 17 16 37 37 H 1.09002 * 110.03268 * 119.28653 * 20 19 17 38 38 H 1.08995 * 110.03391 * 240.66959 * 20 19 17 39 39 H 0.96699 * 117.00168 * 180.02562 * 25 23 21 40 40 H 1.09001 * 110.75082 * 321.69036 * 26 17 16 41 41 H 1.08998 * 110.75665 * 85.06041 * 26 17 16 42 42 H 1.09002 * 110.36548 * 143.18982 * 27 13 12 43 43 H 1.08997 * 110.36146 * 265.51318 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.4608 -2.6320 -1.1838 11 6 2.2196 -3.7007 0.1591 12 6 1.3301 -4.7801 0.8113 13 7 0.2070 -4.0870 1.4593 14 6 -0.8057 -4.6808 2.1215 15 8 -1.6819 -4.0048 2.6250 16 7 -0.8470 -6.0239 2.2256 17 6 -1.9473 -6.6693 2.9458 18 1 -2.2458 -6.0691 3.8054 19 6 -3.1479 -6.8986 2.0045 20 6 -3.7569 -8.2574 2.3919 21 6 -2.9056 -8.8078 3.5548 22 1 -3.3587 -8.5535 4.5130 23 6 -2.7407 -10.3003 3.4274 24 8 -1.6382 -10.7772 3.2965 25 8 -3.8183 -11.0998 3.4593 26 6 -1.5393 -8.0944 3.3951 27 6 0.3752 -2.6347 1.2701 28 1 -0.4849 0.8401 0.0004 29 1 -0.2255 -1.9570 -1.2762 30 1 2.5844 -4.0337 -0.8126 31 1 3.0517 -3.4409 0.8135 32 1 1.9021 -5.3349 1.5552 33 1 0.9547 -5.4601 0.0467 34 1 -0.1481 -6.5632 1.8236 35 1 -2.8106 -6.9224 0.9683 36 1 -3.8848 -6.1069 2.1396 37 1 -4.7895 -8.1253 2.7151 38 1 -3.7160 -8.9405 1.5435 39 1 -3.6625 -12.0503 3.3742 40 1 -0.9364 -8.5828 2.6295 41 1 -1.0066 -8.0621 4.3455 42 1 -0.5927 -2.1575 1.1164 43 1 0.8830 -2.1966 2.1293 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574480320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:34 Heat of formation + Delta-G solvation = -201.959286 kcal Electronic energy + Delta-G solvation = -26490.921172 eV Core-core repulsion = 22534.443445 eV Total energy + Delta-G solvation = -3956.477727 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.64448 -41.13440 -39.44553 -38.34949 -37.05067 -36.01255 -34.69882 -34.21746 -31.77951 -30.14484 -29.65998 -28.97363 -26.79034 -24.43488 -23.95158 -21.72065 -21.47983 -21.35830 -20.61815 -19.24649 -18.98783 -18.73120 -18.10157 -17.24761 -17.08666 -16.82800 -16.56318 -16.24083 -15.89489 -15.59509 -15.04575 -14.79659 -14.62702 -14.41474 -14.25351 -13.79171 -13.51484 -13.40500 -13.20617 -13.01979 -12.83062 -12.70647 -12.51075 -12.47809 -12.31523 -12.26591 -12.22276 -12.07441 -11.96894 -11.68763 -11.31327 -11.28793 -11.16505 -10.65041 -10.30839 -10.14753 -9.31001 -8.23017 -6.40165 1.20444 1.42696 1.44889 1.54541 1.66563 2.12313 2.20737 2.39520 3.02759 3.06499 3.41366 3.51559 3.81286 3.90246 4.09826 4.19906 4.21833 4.34699 4.35544 4.39706 4.42514 4.46402 4.60403 4.64742 4.78620 4.85739 5.06478 5.07597 5.08744 5.12474 5.18716 5.24581 5.32745 5.40575 5.48189 5.62112 5.64490 5.77565 6.07188 6.21096 6.67161 7.01319 7.09231 7.29170 7.36531 7.61014 8.82077 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.035066 B = 0.002691 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.313884 B =10403.513021 C =10713.761036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.025 3.975 3 Si 0.964 3.036 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.555 4.555 8 H 0.069 0.931 9 C 0.231 3.769 10 O -0.587 6.587 11 C -0.111 4.111 12 C 0.107 3.893 13 N -0.635 5.635 14 C 0.711 3.289 15 O -0.641 6.641 16 N -0.725 5.725 17 C 0.157 3.843 18 H 0.082 0.918 19 C -0.137 4.137 20 C -0.096 4.096 21 C -0.082 4.082 22 H 0.141 0.859 23 C 0.496 3.504 24 O -0.548 6.548 25 O -0.510 6.510 26 C -0.104 4.104 27 C 0.129 3.871 28 H 0.268 0.732 29 H 0.372 0.628 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.407 0.593 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.427 0.573 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.044 0.956 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.892 -20.514 6.290 22.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.176 4.176 3 Si 0.789 3.211 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.593 4.593 8 H 0.087 0.913 9 C 0.191 3.809 10 O -0.395 6.395 11 C -0.149 4.149 12 C -0.015 4.015 13 N -0.371 5.371 14 C 0.413 3.587 15 O -0.523 6.523 16 N -0.380 5.380 17 C 0.052 3.948 18 H 0.100 0.900 19 C -0.176 4.176 20 C -0.134 4.134 21 C -0.102 4.102 22 H 0.158 0.842 23 C 0.339 3.661 24 O -0.439 6.439 25 O -0.323 6.323 26 C -0.142 4.142 27 C 0.006 3.994 28 H 0.078 0.922 29 H 0.221 0.779 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.244 0.756 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.093 0.907 39 H 0.289 0.711 40 H 0.103 0.897 41 H 0.110 0.890 42 H 0.062 0.938 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.109 -20.203 6.603 21.860 hybrid contribution 0.247 0.995 -0.239 1.053 sum -4.862 -19.208 6.364 20.811 Atomic orbital electron populations 1.69853 1.07159 1.28324 1.50059 1.25839 0.95756 1.02848 0.93142 0.85465 0.78716 0.78673 0.78227 1.20073 1.21212 1.18926 1.21792 0.93931 0.91226 1.52391 0.91316 1.19873 0.87214 0.93130 0.80672 1.86095 1.51384 1.56782 1.45197 1.22590 0.97213 0.93825 1.01240 1.22104 0.87226 0.95410 0.96764 1.47883 1.24552 1.08603 1.56076 1.15729 0.81102 0.82761 0.79063 1.90841 1.41278 1.64722 1.55480 1.44997 1.29436 1.03449 1.60166 1.21702 0.85822 0.92959 0.94335 0.89971 1.22568 0.97561 0.97717 0.99769 1.21981 0.99905 0.94938 0.96619 1.21837 0.98449 0.85900 1.03984 0.84167 1.23379 0.81405 0.90758 0.70527 1.90733 1.28496 1.77618 1.47059 1.84505 1.38071 1.25457 1.84262 1.22613 0.95927 0.92014 1.03631 1.22631 1.00032 0.77796 0.98990 0.92226 0.77930 0.89725 0.89336 0.89251 0.90993 0.75645 0.91901 0.91995 0.88479 0.90723 0.71083 0.89686 0.89046 0.93754 0.94355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.34 10.69 21.45 0.23 -50.11 16 2 C 0.03 1.32 5.29 84.65 0.45 1.77 16 3 Si 0.96 41.95 29.54 68.60 2.03 43.97 16 4 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.56 -28.91 8.27 25.60 0.21 -28.69 16 8 H 0.07 3.45 7.79 -2.91 -0.02 3.43 16 9 C 0.23 11.20 0.87 -10.15 -0.01 11.19 16 10 O -0.59 -30.22 13.16 -148.98 -1.96 -32.18 16 11 C -0.11 -4.16 6.13 31.79 0.19 -3.97 16 12 C 0.11 3.45 6.15 86.73 0.53 3.99 16 13 N -0.63 -26.01 3.33 -829.72 -2.76 -28.77 16 14 C 0.71 28.52 8.48 179.06 1.52 30.04 16 15 O -0.64 -31.32 16.31 -3.97 -0.06 -31.39 16 16 N -0.72 -20.46 5.07 -452.69 -2.30 -22.76 16 17 C 0.16 3.64 3.16 46.07 0.15 3.79 16 18 H 0.08 2.18 7.67 -2.39 -0.02 2.16 16 19 C -0.14 -2.95 6.53 31.32 0.20 -2.75 16 20 C -0.10 -1.36 6.34 31.32 0.20 -1.16 16 21 C -0.08 -1.10 3.37 -10.44 -0.04 -1.14 16 22 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 23 C 0.50 7.46 7.49 71.24 0.53 7.99 16 24 O -0.55 -11.96 16.52 21.96 0.36 -11.60 16 25 O -0.51 -5.05 13.40 -51.32 -0.69 -5.74 16 26 C -0.10 -1.74 5.50 31.91 0.18 -1.56 16 27 C 0.13 6.42 5.38 86.86 0.47 6.89 16 28 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 29 H 0.37 20.19 7.57 -74.05 -0.56 19.63 16 30 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 31 H 0.09 3.10 8.03 -2.39 -0.02 3.08 16 32 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 33 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.41 9.34 7.52 -92.71 -0.70 8.64 16 35 H 0.06 1.49 8.04 -2.39 -0.02 1.47 16 36 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 1.01 7.83 -2.39 -0.02 1.00 16 39 H 0.43 0.88 9.10 -74.06 -0.67 0.21 16 40 H 0.08 1.51 7.41 -2.39 -0.02 1.49 16 41 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.04 2.54 7.33 -2.39 -0.02 2.52 16 43 H 0.04 1.99 8.03 -2.39 -0.02 1.97 16 Total: -1.00 -72.39 353.93 -1.43 -73.82 By element: Atomic # 1 Polarization: 39.24 SS G_CDS: -0.87 Total: 38.37 kcal Atomic # 6 Polarization: 21.80 SS G_CDS: 4.59 Total: 26.39 kcal Atomic # 7 Polarization: -96.82 SS G_CDS: -4.83 Total: -101.65 kcal Atomic # 8 Polarization: -78.56 SS G_CDS: -2.35 Total: -80.91 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -72.39 -1.43 -73.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.138 kcal (2) G-P(sol) polarization free energy of solvation -72.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds