Wall clock time and date at job start Tue Mar 31 2020 10:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99744 * 2 1 4 4 H 1.48496 * 109.47513 * 270.00033 * 3 2 1 5 5 H 1.48506 * 109.47263 * 30.00085 * 3 2 1 6 6 H 1.48498 * 109.47090 * 149.99649 * 3 2 1 7 7 C 1.37878 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00071 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99692 * 0.02562 * 7 2 1 10 10 O 1.42895 * 110.64091 * 298.30506 * 9 7 2 11 11 C 1.55448 * 110.70612 * 174.99986 * 9 7 2 12 12 C 1.54905 * 101.45165 * 206.14440 * 11 9 7 13 13 N 1.47419 * 104.92834 * 37.00468 * 12 11 9 14 14 C 1.34780 * 125.65139 * 155.80015 * 13 12 11 15 15 O 1.21584 * 120.00061 * 180.02562 * 14 13 12 16 16 N 1.34779 * 119.99751 * 0.02562 * 14 13 12 17 17 C 1.46493 * 120.00093 * 180.02562 * 16 14 13 18 18 H 1.09004 * 110.01927 * 326.38876 * 17 16 14 19 19 C 1.54265 * 110.03707 * 87.83518 * 17 16 14 20 20 C 1.54883 * 104.19549 * 95.67222 * 19 17 16 21 21 C 1.54886 * 102.75060 * 37.94945 * 20 19 17 22 22 H 1.08999 * 110.48814 * 80.73112 * 21 20 19 23 23 C 1.50703 * 110.48869 * 203.37792 * 21 20 19 24 24 O 1.20828 * 119.99754 * 114.76875 * 23 21 20 25 25 O 1.34227 * 119.99676 * 294.77487 * 23 21 20 26 26 C 1.53878 * 110.03269 * 205.00394 * 17 16 14 27 27 C 1.47026 * 108.70576 * 335.81449 * 13 12 11 28 28 H 0.97000 * 120.00099 * 359.97438 * 1 2 3 29 29 H 0.96705 * 114.00065 * 61.69148 * 10 9 7 30 30 H 1.09002 * 111.11560 * 88.08755 * 11 9 7 31 31 H 1.09004 * 111.00873 * 324.15164 * 11 9 7 32 32 H 1.09002 * 110.36692 * 278.10842 * 12 11 9 33 33 H 1.08995 * 110.36664 * 155.89643 * 12 11 9 34 34 H 0.97003 * 119.99602 * 0.02562 * 16 14 13 35 35 H 1.09000 * 110.48865 * 214.35955 * 19 17 16 36 36 H 1.09005 * 110.48067 * 337.00027 * 19 17 16 37 37 H 1.09006 * 110.75737 * 279.62758 * 20 19 17 38 38 H 1.09000 * 110.75662 * 156.26362 * 20 19 17 39 39 H 0.96701 * 116.99414 * 179.97438 * 25 23 21 40 40 H 1.09003 * 110.02902 * 359.97438 * 26 17 16 41 41 H 1.08998 * 110.03326 * 121.43234 * 26 17 16 42 42 H 1.08998 * 109.88266 * 120.47537 * 27 13 12 43 43 H 1.08997 * 109.88244 * 241.48894 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 0.4496 -2.6181 1.1776 11 6 2.2307 -3.6995 -0.1256 12 6 1.3211 -4.7719 -0.7752 13 7 0.4655 -4.0253 -1.7152 14 6 -0.1392 -4.5390 -2.8048 15 8 -0.8248 -3.8265 -3.5122 16 7 0.0163 -5.8425 -3.1100 17 6 -0.6404 -6.4008 -4.2946 18 1 -1.5975 -5.9056 -4.4588 19 6 0.2646 -6.2274 -5.5317 20 6 1.0155 -7.5773 -5.6452 21 6 -0.0712 -8.6074 -5.2491 22 1 -0.7274 -8.8139 -6.0946 23 6 0.5645 -9.8794 -4.7501 24 8 0.4174 -10.2172 -3.5994 25 8 1.2941 -10.6369 -5.5841 26 6 -0.8541 -7.9140 -4.1148 27 6 0.3811 -2.6274 -1.2677 28 1 -0.4850 0.8400 0.0004 29 1 -0.2286 -1.9339 1.2625 30 1 2.5807 -4.0252 0.8540 31 1 3.0697 -3.4525 -0.7762 32 1 0.7122 -5.2632 -0.0162 33 1 1.9230 -5.5058 -1.3110 34 1 0.5630 -6.4110 -2.5453 35 1 -0.3373 -6.0495 -6.4229 36 1 0.9696 -5.4106 -5.3770 37 1 1.8536 -7.6129 -4.9491 38 1 1.3537 -7.7465 -6.6675 39 1 1.6823 -11.4435 -5.2182 40 1 -0.4687 -8.2331 -3.1464 41 1 -1.9146 -8.1533 -4.1928 42 1 0.7607 -1.9654 -2.0460 43 1 -0.6536 -2.3736 -1.0375 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:39 Heat of formation + Delta-G solvation = -174.930725 kcal Electronic energy + Delta-G solvation = -26684.264088 eV Core-core repulsion = 22728.958407 eV Total energy + Delta-G solvation = -3955.305681 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.88892 -39.76367 -38.19411 -36.98377 -36.37459 -34.24146 -33.29988 -32.20633 -30.10836 -29.30202 -28.37749 -27.56290 -24.95793 -23.49435 -22.69875 -20.93669 -20.15813 -19.62146 -19.36405 -18.43558 -17.52383 -17.25582 -17.02514 -16.28049 -15.85326 -15.49852 -15.00523 -14.83509 -14.47711 -14.24394 -13.74049 -13.62866 -13.25138 -12.89716 -12.87212 -12.36807 -12.21790 -11.95386 -11.84453 -11.73550 -11.64209 -11.57399 -11.37909 -11.18657 -11.05199 -11.00317 -10.78134 -10.67974 -10.64472 -10.48202 -10.15687 -9.58164 -9.29190 -8.83109 -8.66263 -8.29810 -7.74134 -6.26235 -4.34802 1.86640 2.65611 3.15599 3.23334 3.30170 3.32982 3.72073 4.11388 4.23805 4.28259 4.47703 4.61687 4.99394 5.01399 5.07417 5.15047 5.20498 5.24562 5.39371 5.40823 5.58333 5.71062 5.74204 5.78092 5.92866 5.95810 6.03717 6.06169 6.15321 6.18290 6.52239 6.73560 6.83926 6.90818 7.00966 7.28238 7.33978 7.54937 7.66263 7.75092 8.05932 8.54711 8.69033 9.14771 9.31549 9.40151 10.81528 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.026724 B = 0.002936 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.495217 B = 9534.760169 C = 9821.620854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.070 3.930 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.585 6.585 11 C -0.116 4.116 12 C 0.103 3.897 13 N -0.630 5.630 14 C 0.715 3.285 15 O -0.597 6.597 16 N -0.746 5.746 17 C 0.162 3.838 18 H 0.096 0.904 19 C -0.135 4.135 20 C -0.110 4.110 21 C -0.087 4.087 22 H 0.116 0.884 23 C 0.485 3.515 24 O -0.513 6.513 25 O -0.516 6.516 26 C -0.123 4.123 27 C 0.123 3.877 28 H 0.270 0.730 29 H 0.382 0.618 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.392 0.608 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.409 0.591 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.064 0.936 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.447 -18.103 -10.508 20.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.084 0.916 9 C 0.207 3.793 10 O -0.394 6.394 11 C -0.154 4.154 12 C -0.020 4.020 13 N -0.367 5.367 14 C 0.417 3.583 15 O -0.476 6.476 16 N -0.403 5.403 17 C 0.056 3.944 18 H 0.114 0.886 19 C -0.174 4.174 20 C -0.147 4.147 21 C -0.107 4.107 22 H 0.134 0.866 23 C 0.327 3.673 24 O -0.401 6.401 25 O -0.328 6.328 26 C -0.161 4.161 27 C 0.001 3.999 28 H 0.080 0.920 29 H 0.232 0.768 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.227 0.773 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.268 0.732 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.894 -17.700 -10.818 20.763 hybrid contribution 0.562 0.486 0.362 0.826 sum 1.456 -17.214 -10.455 20.193 Atomic orbital electron populations 1.69701 1.05969 1.27892 1.49621 1.25076 0.95054 0.99748 0.93426 0.86406 0.79788 0.82470 0.78261 1.20438 1.21004 1.19724 1.21490 0.93631 0.90104 1.52326 0.91592 1.19559 0.86528 0.91952 0.81229 1.86100 1.51773 1.56618 1.44874 1.22766 0.97351 0.95155 1.00094 1.22224 0.92738 0.95099 0.91974 1.47977 1.50713 1.13071 1.24942 1.15532 0.80316 0.81622 0.80805 1.90880 1.44751 1.59359 1.52566 1.45332 1.55795 1.09322 1.29804 1.21286 0.96857 0.91893 0.84387 0.88630 1.22855 0.99203 0.96896 0.98414 1.22502 0.96530 0.93381 1.02318 1.21921 0.98502 0.89509 1.00737 0.86571 1.23438 0.75244 0.84974 0.83596 1.90733 1.58300 1.71444 1.19609 1.84546 1.63343 1.38480 1.46383 1.22505 1.00930 0.93710 0.98988 1.22847 1.01420 0.77303 0.98288 0.92016 0.76756 0.90626 0.90550 0.92021 0.92720 0.77318 0.90268 0.90171 0.90953 0.90072 0.73219 0.88893 0.89688 0.91804 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.90 10.97 55.43 0.61 -23.29 16 2 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 3 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -14.04 8.12 -34.44 -0.28 -14.32 16 8 H 0.07 1.70 7.78 -52.49 -0.41 1.29 16 9 C 0.25 5.98 0.85 -89.78 -0.08 5.91 16 10 O -0.58 -14.70 13.09 -35.23 -0.46 -15.16 16 11 C -0.12 -2.29 6.25 -24.43 -0.15 -2.44 16 12 C 0.10 1.81 6.56 -2.53 -0.02 1.79 16 13 N -0.63 -13.01 3.33 -176.25 -0.59 -13.60 16 14 C 0.72 14.23 8.49 -86.91 -0.74 13.50 16 15 O -0.60 -14.09 16.32 5.29 0.09 -14.00 16 16 N -0.75 -10.88 4.99 -57.58 -0.29 -11.17 16 17 C 0.16 1.93 3.25 -66.81 -0.22 1.71 16 18 H 0.10 1.30 7.56 -51.93 -0.39 0.90 16 19 C -0.13 -1.39 6.54 -25.08 -0.16 -1.55 16 20 C -0.11 -0.88 6.32 -24.74 -0.16 -1.04 16 21 C -0.09 -0.67 3.36 -90.11 -0.30 -0.98 16 22 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 23 C 0.49 4.30 7.62 36.01 0.27 4.57 16 24 O -0.51 -6.19 16.18 -18.75 -0.30 -6.49 16 25 O -0.52 -3.36 13.42 -39.25 -0.53 -3.89 16 26 C -0.12 -1.15 5.95 -25.61 -0.15 -1.31 16 27 C 0.12 3.02 5.24 -3.06 -0.02 3.00 16 28 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.38 9.84 7.45 45.56 0.34 10.18 16 30 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.05 0.77 7.29 -51.93 -0.38 0.40 16 34 H 0.39 5.05 6.80 -40.82 -0.28 4.77 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 37 H 0.07 0.63 8.05 -51.93 -0.42 0.21 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.41 1.07 9.10 45.56 0.41 1.49 16 40 H 0.09 1.00 6.33 -51.93 -0.33 0.68 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 1.71 7.81 -51.93 -0.41 1.30 16 43 H 0.06 1.68 7.93 -51.93 -0.41 1.27 16 LS Contribution 352.33 15.07 5.31 5.31 Total: -1.00 -32.56 352.33 -8.05 -40.61 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -4.77 Total: 15.61 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: -2.09 Total: 10.58 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.27 Total: -48.06 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -1.20 Total: -39.54 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.56 -8.05 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.322 kcal (2) G-P(sol) polarization free energy of solvation -32.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds