Wall clock time and date at job start Tue Mar 31 2020 10:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 119.99805 * 2 1 4 4 H 1.48498 * 109.47405 * 240.00054 * 3 2 1 5 5 H 1.48502 * 109.47222 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46939 * 120.00065 * 3 2 1 7 7 C 1.38951 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00302 * 201.12804 * 7 2 1 9 9 N 1.37101 * 119.99991 * 21.12483 * 7 2 1 10 10 C 1.46504 * 119.99629 * 16.26211 * 9 7 2 11 11 C 1.50694 * 109.47306 * 264.14311 * 10 9 7 12 12 O 1.20834 * 120.00115 * 359.97438 * 11 10 9 13 13 O 1.34224 * 120.00135 * 180.02562 * 11 10 9 14 14 C 1.34775 * 120.00238 * 196.26253 * 9 7 2 15 15 O 1.21297 * 119.99847 * 0.02562 * 14 9 7 16 16 C 1.50700 * 119.99925 * 179.97438 * 14 9 7 17 17 C 1.53007 * 109.46639 * 180.02562 * 16 14 9 18 18 C 1.50700 * 109.46639 * 180.02562 * 17 16 14 19 19 O 1.21278 * 120.00674 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99925 * 179.97438 * 18 17 16 21 21 C 1.46505 * 120.00425 * 180.02562 * 20 18 17 22 22 C 1.54273 * 110.03014 * 272.90976 * 21 20 18 23 23 C 1.54963 * 104.15833 * 217.13393 * 22 21 20 24 24 C 1.54892 * 102.77656 * 37.88514 * 23 22 21 25 25 C 1.53868 * 110.03353 * 155.69179 * 21 20 18 26 26 H 0.96997 * 120.00287 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47223 * 24.14640 * 10 9 7 28 28 H 1.09006 * 109.46494 * 144.14542 * 10 9 7 29 29 H 0.96700 * 116.99986 * 180.02562 * 13 11 10 30 30 H 1.08994 * 109.46984 * 60.00180 * 16 14 9 31 31 H 1.09002 * 109.47160 * 299.99901 * 16 14 9 32 32 H 1.08994 * 109.47347 * 60.00327 * 17 16 14 33 33 H 1.09002 * 109.47202 * 299.99800 * 17 16 14 34 34 H 0.97007 * 120.00081 * 0.27516 * 20 18 17 35 35 H 1.09000 * 110.01173 * 34.29810 * 21 20 18 36 36 H 1.09001 * 110.48496 * 335.77788 * 22 21 20 37 37 H 1.08993 * 110.48498 * 98.42249 * 22 21 20 38 38 H 1.08999 * 110.71700 * 279.57700 * 23 22 21 39 39 H 1.08996 * 110.92471 * 156.29661 * 23 22 21 40 40 H 1.09006 * 110.48711 * 203.40353 * 24 23 22 41 41 H 1.09003 * 110.59903 * 80.82179 * 24 23 22 42 42 H 1.09002 * 110.02954 * 238.57172 * 25 21 20 43 43 H 1.08998 * 110.03784 * 359.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0345 -1.2349 0.3366 9 7 1.3926 -2.3506 -0.4290 10 6 0.1548 -2.2698 -1.2085 11 6 -1.0289 -2.4273 -0.2893 12 8 -0.8564 -2.5908 0.8955 13 8 -2.2750 -2.3870 -0.7866 14 6 1.9254 -3.5527 -0.1331 15 8 2.9500 -3.6195 0.5127 16 6 1.2475 -4.8137 -0.6035 17 6 2.0509 -6.0292 -0.1364 18 6 1.3734 -7.2902 -0.6074 19 8 0.3487 -7.2235 -1.2527 20 7 1.9063 -8.4923 -0.3116 21 6 1.2480 -9.7183 -0.7699 22 6 0.1845 -10.1621 0.2557 23 6 0.2754 -11.7091 0.2507 24 6 1.7966 -11.9623 0.1057 25 6 2.2724 -10.8624 -0.8656 26 1 -0.4850 0.8400 -0.0004 27 1 0.1016 -1.3018 -1.7066 28 1 0.1432 -3.0639 -1.9551 29 1 -3.0022 -2.4924 -0.1581 30 1 1.1911 -4.8114 -1.6920 31 1 0.2411 -4.8621 -0.1876 32 1 2.1070 -6.0313 0.9521 33 1 3.0575 -5.9810 -0.5520 34 1 2.7238 -8.5459 0.2079 35 1 0.7830 -9.5511 -1.7415 36 1 0.4210 -9.7695 1.2447 37 1 -0.8072 -9.8364 -0.0579 38 1 -0.2679 -12.1245 -0.5980 39 1 -0.0978 -12.1240 1.1869 40 1 1.9803 -12.9502 -0.3171 41 1 2.2957 -11.8621 1.0695 42 1 2.3039 -11.2511 -1.8835 43 1 3.2594 -10.5055 -0.5716 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601070310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:29 Heat of formation + Delta-G solvation = -169.118318 kcal Electronic energy + Delta-G solvation = -26395.563438 eV Core-core repulsion = 22440.509802 eV Total energy + Delta-G solvation = -3955.053636 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.01378 -39.36640 -38.22110 -37.67613 -35.25045 -34.49817 -33.65841 -32.34389 -31.56228 -28.99397 -28.08536 -27.61481 -25.70881 -23.71990 -21.12544 -20.99862 -20.51733 -20.34030 -18.67700 -17.32047 -17.13487 -16.81348 -16.45363 -15.89579 -15.78893 -15.42612 -15.30378 -14.59831 -14.43488 -14.37780 -14.02992 -13.75073 -13.63413 -13.29260 -12.65817 -12.39870 -12.14663 -11.84652 -11.74015 -11.58954 -11.52752 -11.44983 -11.37273 -11.32272 -10.99431 -10.90905 -10.89918 -10.73580 -10.47501 -10.32587 -10.25909 -9.65183 -9.60339 -9.05665 -9.02160 -8.51569 -7.90909 -6.43890 -3.88296 2.79825 3.16656 3.19516 3.24508 3.28744 3.50078 3.67409 4.09147 4.27270 4.27873 4.37135 4.60494 4.74597 4.97355 5.08350 5.13254 5.21547 5.27237 5.29327 5.37589 5.44582 5.51697 5.52862 5.62178 5.76231 5.77460 5.89537 5.94441 5.99792 6.06820 6.11623 6.32911 6.39089 6.51436 6.55469 6.62277 7.52560 7.52750 7.56620 7.98355 8.34244 8.37024 9.06590 9.09210 9.32063 9.84733 10.64917 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.025232 B = 0.002960 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.453497 B = 9457.062836 C =10218.506452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.029 3.971 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.306 4.306 8 H 0.108 0.892 9 N -0.431 5.431 10 C 0.144 3.856 11 C 0.491 3.509 12 O -0.506 6.506 13 O -0.533 6.533 14 C 0.461 3.539 15 O -0.581 6.581 16 C -0.118 4.118 17 C -0.119 4.119 18 C 0.514 3.486 19 O -0.541 6.541 20 N -0.731 5.731 21 C 0.139 3.861 22 C -0.136 4.136 23 C -0.124 4.124 24 C -0.124 4.124 25 C -0.132 4.132 26 H 0.271 0.729 27 H 0.129 0.871 28 H 0.080 0.920 29 H 0.392 0.608 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.400 0.600 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.015 -18.096 -3.631 18.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.174 4.174 3 Si 0.757 3.243 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.433 4.433 8 H 0.125 0.875 9 N -0.150 5.150 10 C 0.018 3.982 11 C 0.332 3.668 12 O -0.392 6.392 13 O -0.344 6.344 14 C 0.250 3.750 15 O -0.465 6.465 16 C -0.159 4.159 17 C -0.159 4.159 18 C 0.302 3.698 19 O -0.418 6.418 20 N -0.384 5.384 21 C 0.034 3.966 22 C -0.175 4.175 23 C -0.162 4.162 24 C -0.162 4.162 25 C -0.170 4.170 26 H 0.082 0.918 27 H 0.147 0.853 28 H 0.098 0.902 29 H 0.248 0.752 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.235 0.765 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.002 -17.895 -3.732 18.280 hybrid contribution -0.046 0.896 0.845 1.232 sum -0.045 -17.000 -2.887 17.243 Atomic orbital electron populations 1.69797 1.06050 1.27995 1.48362 1.25238 0.95314 0.99983 0.96852 0.85927 0.78956 0.80314 0.79103 1.19836 1.21047 1.19858 1.19677 0.97661 0.83394 1.42588 0.87466 1.43426 1.19593 1.05464 1.46564 1.20705 0.81334 1.04862 0.91336 1.23805 0.83171 0.70692 0.89163 1.90608 1.85629 1.45142 1.17783 1.84522 1.17388 1.86304 1.46222 1.20024 0.87309 0.84279 0.83416 1.90509 1.26280 1.86650 1.43078 1.21305 1.00104 0.92372 1.02118 1.21329 1.00508 0.90476 1.03575 1.21028 0.84718 0.85204 0.78844 1.90676 1.24160 1.87428 1.39503 1.46246 1.29258 1.05494 1.57393 1.21605 0.92869 0.83518 0.98580 1.22823 0.99635 0.95315 0.99723 1.22489 0.96121 0.95748 1.01879 1.22355 0.96083 0.98309 0.99432 1.22439 0.98718 0.95306 1.00500 0.91827 0.85332 0.90234 0.75186 0.89729 0.89798 0.88288 0.88273 0.76523 0.89229 0.91094 0.91046 0.91352 0.91421 0.91523 0.91468 0.90828 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.35 9.25 55.50 0.51 -22.84 16 2 C 0.03 0.75 4.89 -17.47 -0.09 0.66 16 3 Si 0.93 20.55 29.60 -169.99 -5.03 15.52 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.31 -8.43 9.35 -14.93 -0.14 -8.57 16 8 H 0.11 3.07 7.37 -52.49 -0.39 2.69 16 9 N -0.43 -10.97 2.18 -116.09 -0.25 -11.23 16 10 C 0.14 3.22 4.97 -5.19 -0.03 3.19 16 11 C 0.49 11.27 5.87 36.00 0.21 11.49 16 12 O -0.51 -13.50 16.81 -18.76 -0.32 -13.81 16 13 O -0.53 -10.07 13.42 -39.24 -0.53 -10.59 16 14 C 0.46 11.17 7.42 -10.99 -0.08 11.09 16 15 O -0.58 -15.57 15.62 5.54 0.09 -15.49 16 16 C -0.12 -2.29 3.60 -27.88 -0.10 -2.39 16 17 C -0.12 -1.90 4.99 -27.88 -0.14 -2.04 16 18 C 0.51 7.67 7.82 -10.99 -0.09 7.58 16 19 O -0.54 -9.84 15.65 5.56 0.09 -9.76 16 20 N -0.73 -8.10 5.04 -52.72 -0.27 -8.36 16 21 C 0.14 1.40 3.23 -66.81 -0.22 1.18 16 22 C -0.14 -1.33 6.54 -25.03 -0.16 -1.50 16 23 C -0.12 -0.92 6.91 -24.70 -0.17 -1.09 16 24 C -0.12 -0.81 6.83 -25.07 -0.17 -0.98 16 25 C -0.13 -0.96 6.57 -25.62 -0.17 -1.13 16 26 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 27 H 0.13 2.95 6.34 -51.93 -0.33 2.63 16 28 H 0.08 1.48 6.69 -51.93 -0.35 1.14 16 29 H 0.39 5.75 9.10 45.56 0.41 6.16 16 30 H 0.08 1.51 7.37 -51.93 -0.38 1.12 16 31 H 0.08 1.72 7.48 -51.93 -0.39 1.33 16 32 H 0.10 1.60 8.10 -51.93 -0.42 1.18 16 33 H 0.10 1.48 8.10 -51.93 -0.42 1.06 16 34 H 0.40 3.44 8.31 -40.82 -0.34 3.10 16 35 H 0.09 1.06 7.59 -51.93 -0.39 0.66 16 36 H 0.07 0.73 8.05 -51.93 -0.42 0.31 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.48 7.61 -51.93 -0.40 0.08 16 LS Contribution 357.15 15.07 5.38 5.38 Total: -1.00 -35.05 357.15 -7.14 -42.19 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -5.48 Total: 11.48 kcal Atomic # 6 Polarization: 18.84 SS G_CDS: -1.34 Total: 17.50 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.00 Total: -42.43 kcal Atomic # 8 Polarization: -48.98 SS G_CDS: -0.67 Total: -49.65 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.52 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.05 -7.14 -42.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.928 kcal (2) G-P(sol) polarization free energy of solvation -35.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds