Wall clock time and date at job start Tue Mar 31 2020 10:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 119.99805 * 2 1 4 4 H 1.48498 * 109.47405 * 240.00054 * 3 2 1 5 5 H 1.48502 * 109.47222 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46939 * 120.00065 * 3 2 1 7 7 C 1.38951 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00302 * 201.12804 * 7 2 1 9 9 N 1.37101 * 119.99991 * 21.12483 * 7 2 1 10 10 C 1.46504 * 119.99629 * 16.26211 * 9 7 2 11 11 C 1.50694 * 109.47306 * 264.14311 * 10 9 7 12 12 O 1.20834 * 120.00115 * 359.97438 * 11 10 9 13 13 O 1.34224 * 120.00135 * 180.02562 * 11 10 9 14 14 C 1.34775 * 120.00238 * 196.26253 * 9 7 2 15 15 O 1.21297 * 119.99847 * 0.02562 * 14 9 7 16 16 C 1.50700 * 119.99925 * 179.97438 * 14 9 7 17 17 C 1.53007 * 109.46639 * 180.02562 * 16 14 9 18 18 C 1.50700 * 109.46639 * 180.02562 * 17 16 14 19 19 O 1.21278 * 120.00674 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99925 * 179.97438 * 18 17 16 21 21 C 1.46505 * 120.00425 * 180.02562 * 20 18 17 22 22 C 1.54273 * 110.03014 * 272.90976 * 21 20 18 23 23 C 1.54963 * 104.15833 * 217.13393 * 22 21 20 24 24 C 1.54892 * 102.77656 * 37.88514 * 23 22 21 25 25 C 1.53868 * 110.03353 * 155.69179 * 21 20 18 26 26 H 0.96997 * 120.00287 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47223 * 24.14640 * 10 9 7 28 28 H 1.09006 * 109.46494 * 144.14542 * 10 9 7 29 29 H 0.96700 * 116.99986 * 180.02562 * 13 11 10 30 30 H 1.08994 * 109.46984 * 60.00180 * 16 14 9 31 31 H 1.09002 * 109.47160 * 299.99901 * 16 14 9 32 32 H 1.08994 * 109.47347 * 60.00327 * 17 16 14 33 33 H 1.09002 * 109.47202 * 299.99800 * 17 16 14 34 34 H 0.97007 * 120.00081 * 0.27516 * 20 18 17 35 35 H 1.09000 * 110.01173 * 34.29810 * 21 20 18 36 36 H 1.09001 * 110.48496 * 335.77788 * 22 21 20 37 37 H 1.08993 * 110.48498 * 98.42249 * 22 21 20 38 38 H 1.08999 * 110.71700 * 279.57700 * 23 22 21 39 39 H 1.08996 * 110.92471 * 156.29661 * 23 22 21 40 40 H 1.09006 * 110.48711 * 203.40353 * 24 23 22 41 41 H 1.09003 * 110.59903 * 80.82179 * 24 23 22 42 42 H 1.09002 * 110.02954 * 238.57172 * 25 21 20 43 43 H 1.08998 * 110.03784 * 359.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0345 -1.2349 0.3366 9 7 1.3926 -2.3506 -0.4290 10 6 0.1548 -2.2698 -1.2085 11 6 -1.0289 -2.4273 -0.2893 12 8 -0.8564 -2.5908 0.8955 13 8 -2.2750 -2.3870 -0.7866 14 6 1.9254 -3.5527 -0.1331 15 8 2.9500 -3.6195 0.5127 16 6 1.2475 -4.8137 -0.6035 17 6 2.0509 -6.0292 -0.1364 18 6 1.3734 -7.2902 -0.6074 19 8 0.3487 -7.2235 -1.2527 20 7 1.9063 -8.4923 -0.3116 21 6 1.2480 -9.7183 -0.7699 22 6 0.1845 -10.1621 0.2557 23 6 0.2754 -11.7091 0.2507 24 6 1.7966 -11.9623 0.1057 25 6 2.2724 -10.8624 -0.8656 26 1 -0.4850 0.8400 -0.0004 27 1 0.1016 -1.3018 -1.7066 28 1 0.1432 -3.0639 -1.9551 29 1 -3.0022 -2.4924 -0.1581 30 1 1.1911 -4.8114 -1.6920 31 1 0.2411 -4.8621 -0.1876 32 1 2.1070 -6.0313 0.9521 33 1 3.0575 -5.9810 -0.5520 34 1 2.7238 -8.5459 0.2079 35 1 0.7830 -9.5511 -1.7415 36 1 0.4210 -9.7695 1.2447 37 1 -0.8072 -9.8364 -0.0579 38 1 -0.2679 -12.1245 -0.5980 39 1 -0.0978 -12.1240 1.1869 40 1 1.9803 -12.9502 -0.3171 41 1 2.2957 -11.8621 1.0695 42 1 2.3039 -11.2511 -1.8835 43 1 3.2594 -10.5055 -0.5716 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:28 Heat of formation + Delta-G solvation = -193.846865 kcal Electronic energy + Delta-G solvation = -26396.635748 eV Core-core repulsion = 22440.509802 eV Total energy + Delta-G solvation = -3956.125946 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.38670 -40.92172 -39.93787 -38.65600 -37.06273 -36.38010 -34.66172 -34.03360 -33.34012 -29.64347 -29.57116 -28.94466 -27.31806 -25.36052 -22.85804 -21.84845 -21.40533 -21.28792 -20.41281 -19.05556 -18.79659 -18.52527 -17.64148 -17.48007 -17.16910 -16.76928 -16.38807 -16.22941 -16.08261 -15.84077 -15.55596 -15.13130 -14.61368 -14.27537 -14.21641 -13.97779 -13.62195 -13.45676 -13.34934 -13.08711 -12.92782 -12.62156 -12.45624 -12.37890 -12.25402 -12.13644 -12.04627 -12.01261 -11.94719 -11.74857 -11.53115 -11.47013 -10.96107 -10.87658 -10.46205 -10.04588 -9.88249 -8.43092 -5.95340 1.38754 1.43759 1.54689 1.60606 1.69181 1.85207 2.13117 2.30639 2.53151 2.96493 3.12815 3.57698 3.68805 3.71993 3.95004 4.02072 4.08587 4.20530 4.28779 4.47387 4.54168 4.56549 4.63775 4.64236 4.73502 4.78765 4.88351 4.90887 4.91916 4.97110 5.05473 5.17810 5.23812 5.29116 5.45876 5.46286 5.62990 5.93129 5.99964 6.37324 6.53770 7.09255 7.24105 7.29121 7.43789 7.90895 8.63665 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.025232 B = 0.002960 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.453497 B = 9457.062836 C =10218.506452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.002 4.002 3 Si 0.995 3.005 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.280 1.280 7 C -0.343 4.343 8 H 0.084 0.916 9 N -0.444 5.444 10 C 0.142 3.858 11 C 0.497 3.503 12 O -0.550 6.550 13 O -0.519 6.519 14 C 0.451 3.549 15 O -0.615 6.615 16 C -0.106 4.106 17 C -0.113 4.113 18 C 0.520 3.480 19 O -0.577 6.577 20 N -0.713 5.713 21 C 0.134 3.866 22 C -0.138 4.138 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.125 4.125 26 H 0.275 0.725 27 H 0.122 0.878 28 H 0.117 0.883 29 H 0.413 0.587 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.414 0.586 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.209 -19.191 -4.363 19.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.204 4.204 3 Si 0.818 3.182 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.206 1.206 7 C -0.470 4.470 8 H 0.102 0.898 9 N -0.163 5.163 10 C 0.016 3.984 11 C 0.340 3.660 12 O -0.439 6.439 13 O -0.331 6.331 14 C 0.241 3.759 15 O -0.502 6.502 16 C -0.146 4.146 17 C -0.153 4.153 18 C 0.307 3.693 19 O -0.457 6.457 20 N -0.366 5.366 21 C 0.030 3.970 22 C -0.177 4.177 23 C -0.158 4.158 24 C -0.157 4.157 25 C -0.163 4.163 26 H 0.085 0.915 27 H 0.140 0.860 28 H 0.134 0.866 29 H 0.273 0.727 30 H 0.121 0.879 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.130 0.870 34 H 0.252 0.748 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.201 -19.027 -4.478 19.548 hybrid contribution -0.200 1.214 1.084 1.640 sum 0.002 -17.813 -3.394 18.133 Atomic orbital electron populations 1.69881 1.06927 1.28819 1.47778 1.26011 0.96145 1.02507 0.95709 0.84975 0.77820 0.76353 0.79018 1.18576 1.19982 1.20618 1.19650 0.97353 0.85162 1.44820 0.89841 1.43605 1.20533 1.05394 1.46807 1.20844 0.80218 1.05864 0.91481 1.23837 0.84277 0.69480 0.88417 1.90593 1.86458 1.47358 1.19539 1.84450 1.16792 1.85423 1.46407 1.20831 0.86912 0.85383 0.82725 1.90468 1.27819 1.87344 1.44574 1.21191 0.99254 0.91184 1.03011 1.21245 1.00729 0.89888 1.03421 1.20742 0.84162 0.85837 0.78562 1.90663 1.25684 1.87937 1.41440 1.46127 1.29325 1.04781 1.56335 1.21754 0.93879 0.83744 0.97653 1.22801 0.98434 0.97396 0.99089 1.22481 0.97212 0.93570 1.02537 1.22356 0.95025 0.98727 0.99584 1.22420 0.98214 0.94246 1.01435 0.91544 0.86000 0.86571 0.72746 0.87930 0.90899 0.88594 0.86983 0.74830 0.91108 0.91672 0.93046 0.90923 0.90650 0.89945 0.90930 0.89949 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.18 9.25 21.66 0.20 -46.98 16 2 C 0.00 -0.13 4.89 84.93 0.42 0.29 16 3 Si 0.99 42.08 29.60 68.60 2.03 44.11 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.34 -19.30 9.35 84.04 0.79 -18.52 16 8 H 0.08 4.98 7.37 -2.91 -0.02 4.96 16 9 N -0.44 -22.97 2.18 -639.59 -1.39 -24.37 16 10 C 0.14 6.28 4.97 85.63 0.43 6.71 16 11 C 0.50 22.64 5.87 71.23 0.42 23.06 16 12 O -0.55 -29.65 16.81 21.94 0.37 -29.28 16 13 O -0.52 -18.78 13.42 -51.35 -0.69 -19.47 16 14 C 0.45 22.25 7.42 87.66 0.65 22.90 16 15 O -0.62 -33.86 15.62 -3.08 -0.05 -33.91 16 16 C -0.11 -4.10 3.60 29.85 0.11 -3.99 16 17 C -0.11 -3.56 4.99 29.85 0.15 -3.41 16 18 C 0.52 15.18 7.82 87.66 0.69 15.86 16 19 O -0.58 -20.93 15.65 -3.02 -0.05 -20.98 16 20 N -0.71 -14.94 5.04 -439.10 -2.21 -17.15 16 21 C 0.13 2.55 3.23 45.71 0.15 2.70 16 22 C -0.14 -2.62 6.54 31.70 0.21 -2.42 16 23 C -0.12 -1.56 6.91 31.91 0.22 -1.34 16 24 C -0.12 -1.22 6.83 31.67 0.22 -1.01 16 25 C -0.13 -1.52 6.57 31.31 0.21 -1.31 16 26 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 27 H 0.12 5.57 6.34 -2.39 -0.02 5.55 16 28 H 0.12 4.19 6.69 -2.38 -0.02 4.18 16 29 H 0.41 11.39 9.10 -74.06 -0.67 10.72 16 30 H 0.10 3.56 7.37 -2.39 -0.02 3.54 16 31 H 0.07 3.01 7.48 -2.39 -0.02 2.99 16 32 H 0.10 3.09 8.10 -2.39 -0.02 3.08 16 33 H 0.11 3.24 8.10 -2.39 -0.02 3.22 16 34 H 0.41 6.35 8.31 -92.70 -0.77 5.58 16 35 H 0.07 1.65 7.59 -2.39 -0.02 1.63 16 36 H 0.06 1.30 8.05 -2.39 -0.02 1.28 16 37 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.08 0.85 7.61 -2.39 -0.02 0.83 16 Total: -1.00 -77.02 357.15 2.45 -74.57 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: -0.39 Total: 33.94 kcal Atomic # 6 Polarization: 34.89 SS G_CDS: 4.63 Total: 39.52 kcal Atomic # 7 Polarization: -85.09 SS G_CDS: -3.41 Total: -88.50 kcal Atomic # 8 Polarization: -103.22 SS G_CDS: -0.42 Total: -103.64 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -77.02 2.45 -74.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.282 kcal (2) G-P(sol) polarization free energy of solvation -77.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds