Wall clock time and date at job start Tue Mar 31 2020 09:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47133 * 2 1 4 4 C 1.50706 * 109.46988 * 119.99784 * 2 1 3 5 5 N 1.31238 * 124.05335 * 299.69865 * 4 2 1 6 6 N 1.27342 * 120.03899 * 179.72905 * 5 4 2 7 7 S 1.56636 * 109.73383 * 0.52890 * 6 5 4 8 8 C 1.38247 * 124.05680 * 120.00259 * 4 2 1 9 9 C 1.47167 * 128.47183 * 0.02562 * 8 4 2 10 10 O 1.21621 * 120.00411 * 0.02562 * 9 8 4 11 11 N 1.34782 * 119.99822 * 180.02562 * 9 8 4 12 12 C 1.46497 * 119.99897 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.47235 * 34.99835 * 12 11 9 14 14 C 1.53001 * 109.47142 * 274.99889 * 12 11 9 15 15 C 1.53005 * 109.47092 * 154.99893 * 12 11 9 16 16 N 1.46496 * 109.47029 * 304.99973 * 15 12 11 17 17 C 1.46500 * 119.99989 * 269.99680 * 16 15 12 18 18 C 1.36942 * 120.00101 * 90.00267 * 16 15 12 19 19 H 1.07999 * 120.00213 * 22.33430 * 18 16 15 20 20 C 1.38807 * 119.99848 * 202.34338 * 18 16 15 21 21 N 1.31618 * 120.00329 * 11.33983 * 20 18 16 22 22 Si 1.86802 * 120.00081 * 191.34288 * 20 18 16 23 23 H 1.48499 * 109.46980 * 89.99620 * 22 20 18 24 24 H 1.48499 * 109.47523 * 209.99620 * 22 20 18 25 25 H 1.48501 * 109.47269 * 330.00174 * 22 20 18 26 26 H 1.09000 * 109.47206 * 60.00129 * 1 2 3 27 27 H 1.08997 * 109.47679 * 300.00127 * 1 2 3 28 28 H 1.08999 * 109.47052 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47220 * 239.99604 * 2 1 3 30 30 H 1.08997 * 109.47391 * 59.99709 * 3 2 1 31 31 H 1.09009 * 109.47272 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47436 * 299.99760 * 3 2 1 33 33 H 0.97004 * 119.99529 * 0.02562 * 11 9 8 34 34 H 1.09007 * 109.46783 * 299.99911 * 14 12 11 35 35 H 1.08997 * 109.47409 * 60.00088 * 14 12 11 36 36 H 1.08998 * 109.47048 * 180.02562 * 14 12 11 37 37 H 1.09007 * 109.46667 * 64.99638 * 15 12 11 38 38 H 1.08994 * 109.47189 * 184.99730 * 15 12 11 39 39 H 1.08992 * 109.46871 * 94.23197 * 17 16 15 40 40 H 1.09003 * 109.46811 * 214.23021 * 17 16 15 41 41 H 1.08992 * 109.46967 * 334.22870 * 17 16 15 42 42 H 0.96997 * 120.00194 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7693 -0.3286 2.4583 6 7 2.2301 -0.9901 3.4441 7 16 3.0823 -2.1953 2.9202 8 6 2.8303 -1.8389 1.2015 9 6 3.3452 -2.5662 0.0303 10 8 3.0747 -2.1819 -1.0915 11 7 4.1167 -3.6582 0.2008 12 6 4.6297 -4.3818 -0.9650 13 1 4.8522 -3.6737 -1.7633 14 6 3.5772 -5.3813 -1.4487 15 6 5.9060 -5.1321 -0.5785 16 7 6.8706 -4.1911 -0.0041 17 6 7.8302 -3.5044 -0.8724 18 6 6.8756 -3.9535 1.3446 19 1 6.4532 -4.6804 2.0225 20 6 7.4233 -2.7783 1.8402 21 7 7.7332 -1.7985 1.0178 22 14 7.7207 -2.5873 3.6745 23 1 9.0845 -3.0713 4.0078 24 1 7.5981 -1.1557 4.0495 25 1 6.7160 -3.3833 4.4244 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.6766 1.9563 0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 4.3321 -3.9648 1.0955 34 1 3.3547 -6.0895 -0.6504 35 1 2.6680 -4.8469 -1.7241 36 1 3.9591 -5.9201 -2.3159 37 1 5.6669 -5.9012 0.1561 38 1 6.3363 -5.5978 -1.4651 39 1 7.4290 -2.5326 -1.1599 40 1 8.7697 -3.3658 -0.3374 41 1 8.0056 -4.1038 -1.7655 42 1 8.1156 -0.9772 1.3642 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754329283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:03 Heat of formation + Delta-G solvation = 45.957058 kcal Electronic energy + Delta-G solvation = -25014.876890 eV Core-core repulsion = 21544.195245 eV Total energy + Delta-G solvation = -3470.681645 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.81192 -39.16262 -36.48972 -35.36792 -34.09991 -31.82769 -30.91334 -29.92278 -27.10593 -27.04427 -26.25631 -25.70811 -23.46545 -21.99993 -21.42234 -20.16493 -19.93022 -17.72060 -17.21372 -16.64367 -15.75914 -15.65595 -15.06601 -14.93735 -14.40559 -14.09213 -13.90079 -13.78234 -13.19124 -13.02449 -12.96976 -12.76812 -12.32860 -12.11394 -12.08046 -12.02198 -11.50773 -11.40488 -11.15905 -11.06085 -10.95509 -10.82071 -10.72567 -10.51193 -10.34855 -10.13922 -10.04814 -9.93795 -9.54448 -9.49917 -9.45367 -8.67729 -8.50665 -6.89244 -5.84844 -3.31366 0.02076 1.10287 1.74433 2.19306 3.25428 3.32612 3.36070 3.36850 3.60147 4.09820 4.36055 4.71145 5.03666 5.21353 5.24277 5.24556 5.30338 5.40461 5.55930 5.73402 5.75897 5.82302 5.87853 5.93218 6.00756 6.06548 6.11707 6.14100 6.33704 6.35158 6.40588 6.51186 6.66952 6.77589 7.03183 7.31173 7.60816 7.71763 7.85151 8.00626 8.25687 8.58949 9.09670 9.73467 10.23280 11.18676 Molecular weight = 312.14amu Principal moments of inertia in cm(-1) A = 0.012165 B = 0.006360 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.217875 B = 4401.136504 C = 5535.492469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.026 4.026 3 C -0.141 4.141 4 C 0.095 3.905 5 N -0.250 5.250 6 N -0.271 5.271 7 S 0.423 5.577 8 C -0.269 4.269 9 C 0.603 3.397 10 O -0.535 6.535 11 N -0.675 5.675 12 C 0.118 3.882 13 H 0.082 0.918 14 C -0.161 4.161 15 C 0.141 3.859 16 N -0.599 5.599 17 C 0.163 3.837 18 C -0.261 4.261 19 H 0.068 0.932 20 C 0.010 3.990 21 N -0.895 5.895 22 Si 0.884 3.116 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.273 1.273 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.123 0.877 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.403 0.597 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.028 0.972 40 H 0.045 0.955 41 H -0.003 1.003 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.487 -2.631 -2.010 10.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.048 4.048 3 C -0.199 4.199 4 C -0.053 4.053 5 N -0.115 5.115 6 N -0.252 5.252 7 S 0.560 5.440 8 C -0.410 4.410 9 C 0.386 3.614 10 O -0.414 6.414 11 N -0.324 5.324 12 C 0.010 3.990 13 H 0.100 0.900 14 C -0.220 4.220 15 C 0.012 3.988 16 N -0.321 5.321 17 C 0.019 3.981 18 C -0.390 4.390 19 H 0.085 0.915 20 C -0.189 4.189 21 N -0.539 5.539 22 Si 0.713 3.287 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.198 1.198 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.141 0.859 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.239 0.761 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.047 0.953 40 H 0.063 0.937 41 H 0.015 0.985 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.519 -2.234 -0.750 10.779 hybrid contribution 0.375 0.448 0.228 0.627 sum -10.144 -1.786 -0.523 10.313 Atomic orbital electron populations 1.21783 0.93641 1.01922 1.02317 1.20096 0.96127 0.96081 0.92467 1.21793 1.01574 0.94335 1.02198 1.22826 0.95589 0.92767 0.94096 1.70479 1.20454 1.24376 0.96200 1.78786 1.14082 1.07876 1.24412 1.82784 1.38168 1.27945 0.95118 1.27881 1.08717 1.04193 1.00181 1.16353 0.78915 0.80238 0.85866 1.90684 1.60020 1.67246 1.23436 1.45653 1.48547 1.27086 1.11092 1.21973 0.94758 0.94176 0.88052 0.89988 1.22167 0.99618 0.99247 1.00936 1.21218 0.87983 0.92283 0.97275 1.43903 1.34298 1.49394 1.04475 1.20808 0.93088 0.94090 0.90143 1.19093 1.37524 1.00237 0.82166 0.91452 1.24980 1.01491 0.95342 0.97124 1.70057 1.46153 1.04827 1.32891 0.86568 0.78930 0.77362 0.85820 1.21133 1.21594 1.19831 0.91709 0.92064 0.92824 0.85949 0.92091 0.92402 0.91700 0.76057 0.92864 0.92765 0.91892 0.93163 0.92581 0.95337 0.93653 0.98473 0.93628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.16 37.15 0.34 -1.35 16 2 C -0.03 -0.38 3.25 -91.77 -0.30 -0.68 16 3 C -0.14 -1.94 9.16 37.16 0.34 -1.60 16 4 C 0.09 1.62 5.53 -82.84 -0.46 1.16 16 5 N -0.25 -4.38 11.51 33.42 0.38 -3.99 16 6 N -0.27 -4.74 12.51 60.35 0.75 -3.99 16 7 S 0.42 6.94 23.04 -107.50 -2.48 4.46 16 8 C -0.27 -4.80 6.80 -35.95 -0.24 -5.04 16 9 C 0.60 11.50 7.77 -12.63 -0.10 11.40 16 10 O -0.53 -10.98 14.21 5.26 0.07 -10.90 16 11 N -0.67 -12.25 4.48 -54.96 -0.25 -12.50 16 12 C 0.12 2.02 2.88 -67.93 -0.20 1.83 16 13 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 14 C -0.16 -2.18 9.48 37.16 0.35 -1.83 16 15 C 0.14 2.50 5.36 -4.04 -0.02 2.48 16 16 N -0.60 -13.42 2.82 -181.12 -0.51 -13.93 16 17 C 0.16 3.79 9.01 59.85 0.54 4.33 16 18 C -0.26 -6.26 8.02 -15.06 -0.12 -6.38 16 19 H 0.07 1.55 7.84 -52.49 -0.41 1.14 16 20 C 0.01 0.27 5.13 -17.43 -0.09 0.18 16 21 N -0.90 -24.51 10.58 55.49 0.59 -23.93 16 22 Si 0.88 20.28 29.57 -169.99 -5.03 15.25 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.12 2.01 5.49 -51.93 -0.29 1.73 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.40 7.22 6.83 -40.82 -0.28 6.94 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.84 8.03 -51.93 -0.42 0.42 16 38 H 0.06 0.90 7.86 -51.93 -0.41 0.49 16 39 H 0.03 0.73 7.42 -51.93 -0.39 0.35 16 40 H 0.04 1.14 7.19 -51.93 -0.37 0.77 16 41 H 0.00 -0.07 7.84 -51.93 -0.41 -0.47 16 42 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 359.28 15.07 5.41 5.41 Total: -1.00 -28.54 359.28 -7.30 -35.84 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -6.30 Total: 3.78 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 0.05 Total: 4.48 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: 0.97 Total: -58.33 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.07 Total: -10.90 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.03 Total: 15.25 kcal Atomic # 16 Polarization: 6.94 SS G_CDS: -2.48 Total: 4.46 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.54 -7.30 -35.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754329283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.794 kcal (2) G-P(sol) polarization free energy of solvation -28.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds