Wall clock time and date at job start Tue Mar 31 2020 09:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47133 * 2 1 4 4 C 1.50706 * 109.46988 * 119.99784 * 2 1 3 5 5 N 1.31238 * 124.05335 * 299.69865 * 4 2 1 6 6 N 1.27342 * 120.03899 * 179.72905 * 5 4 2 7 7 S 1.56636 * 109.73383 * 0.52890 * 6 5 4 8 8 C 1.38247 * 124.05680 * 120.00259 * 4 2 1 9 9 C 1.47167 * 128.47183 * 0.02562 * 8 4 2 10 10 O 1.21621 * 120.00411 * 0.02562 * 9 8 4 11 11 N 1.34782 * 119.99822 * 180.02562 * 9 8 4 12 12 C 1.46497 * 119.99897 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.47235 * 34.99835 * 12 11 9 14 14 C 1.53001 * 109.47142 * 274.99889 * 12 11 9 15 15 C 1.53005 * 109.47092 * 154.99893 * 12 11 9 16 16 N 1.46496 * 109.47029 * 304.99973 * 15 12 11 17 17 C 1.46500 * 119.99989 * 269.99680 * 16 15 12 18 18 C 1.36942 * 120.00101 * 90.00267 * 16 15 12 19 19 H 1.07999 * 120.00213 * 22.33430 * 18 16 15 20 20 C 1.38807 * 119.99848 * 202.34338 * 18 16 15 21 21 N 1.31618 * 120.00329 * 11.33983 * 20 18 16 22 22 Si 1.86802 * 120.00081 * 191.34288 * 20 18 16 23 23 H 1.48499 * 109.46980 * 89.99620 * 22 20 18 24 24 H 1.48499 * 109.47523 * 209.99620 * 22 20 18 25 25 H 1.48501 * 109.47269 * 330.00174 * 22 20 18 26 26 H 1.09000 * 109.47206 * 60.00129 * 1 2 3 27 27 H 1.08997 * 109.47679 * 300.00127 * 1 2 3 28 28 H 1.08999 * 109.47052 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47220 * 239.99604 * 2 1 3 30 30 H 1.08997 * 109.47391 * 59.99709 * 3 2 1 31 31 H 1.09009 * 109.47272 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47436 * 299.99760 * 3 2 1 33 33 H 0.97004 * 119.99529 * 0.02562 * 11 9 8 34 34 H 1.09007 * 109.46783 * 299.99911 * 14 12 11 35 35 H 1.08997 * 109.47409 * 60.00088 * 14 12 11 36 36 H 1.08998 * 109.47048 * 180.02562 * 14 12 11 37 37 H 1.09007 * 109.46667 * 64.99638 * 15 12 11 38 38 H 1.08994 * 109.47189 * 184.99730 * 15 12 11 39 39 H 1.08992 * 109.46871 * 94.23197 * 17 16 15 40 40 H 1.09003 * 109.46811 * 214.23021 * 17 16 15 41 41 H 1.08992 * 109.46967 * 334.22870 * 17 16 15 42 42 H 0.96997 * 120.00194 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7693 -0.3286 2.4583 6 7 2.2301 -0.9901 3.4441 7 16 3.0823 -2.1953 2.9202 8 6 2.8303 -1.8389 1.2015 9 6 3.3452 -2.5662 0.0303 10 8 3.0747 -2.1819 -1.0915 11 7 4.1167 -3.6582 0.2008 12 6 4.6297 -4.3818 -0.9650 13 1 4.8522 -3.6737 -1.7633 14 6 3.5772 -5.3813 -1.4487 15 6 5.9060 -5.1321 -0.5785 16 7 6.8706 -4.1911 -0.0041 17 6 7.8302 -3.5044 -0.8724 18 6 6.8756 -3.9535 1.3446 19 1 6.4532 -4.6804 2.0225 20 6 7.4233 -2.7783 1.8402 21 7 7.7332 -1.7985 1.0178 22 14 7.7207 -2.5873 3.6745 23 1 9.0845 -3.0713 4.0078 24 1 7.5981 -1.1557 4.0495 25 1 6.7160 -3.3833 4.4244 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.6766 1.9563 0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 4.3321 -3.9648 1.0955 34 1 3.3547 -6.0895 -0.6504 35 1 2.6680 -4.8469 -1.7241 36 1 3.9591 -5.9201 -2.3159 37 1 5.6669 -5.9012 0.1561 38 1 6.3363 -5.5978 -1.4651 39 1 7.4290 -2.5326 -1.1599 40 1 8.7697 -3.3658 -0.3374 41 1 8.0056 -4.1038 -1.7655 42 1 8.1156 -0.9772 1.3642 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754329283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:02 Heat of formation + Delta-G solvation = 28.483715 kcal Electronic energy + Delta-G solvation = -25015.634591 eV Core-core repulsion = 21544.195245 eV Total energy + Delta-G solvation = -3471.439347 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.16626 -40.63036 -38.07727 -36.59480 -35.72243 -33.41092 -32.48130 -31.31120 -28.47231 -28.08204 -28.01113 -27.34907 -24.82250 -23.49019 -22.86332 -21.61104 -21.38218 -19.07518 -18.77260 -18.30911 -17.16784 -17.04699 -16.80042 -16.24809 -15.86602 -15.52928 -15.40042 -15.20225 -14.88036 -14.49571 -14.10958 -14.09481 -13.85102 -13.41064 -13.38101 -13.07559 -13.06713 -12.87610 -12.74288 -12.51867 -12.26139 -12.23450 -12.11468 -12.01086 -11.94758 -11.89611 -11.66891 -11.44768 -10.92561 -10.86839 -10.81461 -10.60599 -9.95137 -8.75901 -7.78288 -5.24731 -1.35751 -0.24944 0.38600 0.83231 1.42984 1.47817 1.53034 1.90047 2.19234 2.50649 2.78321 3.37571 3.42519 3.65872 3.79480 3.98688 4.13623 4.15018 4.19790 4.45791 4.55649 4.66089 4.77042 4.80436 4.87327 4.90196 4.91400 4.93980 5.04630 5.09926 5.20758 5.28398 5.37188 5.37996 5.44244 5.63435 5.68225 5.78261 6.34627 6.45627 6.58249 7.12798 7.18406 7.91003 8.36598 9.24576 Molecular weight = 312.14amu Principal moments of inertia in cm(-1) A = 0.012165 B = 0.006360 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.217875 B = 4401.136504 C = 5535.492469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.030 4.030 3 C -0.137 4.137 4 C 0.096 3.904 5 N -0.258 5.258 6 N -0.282 5.282 7 S 0.462 5.538 8 C -0.295 4.295 9 C 0.600 3.400 10 O -0.556 6.556 11 N -0.675 5.675 12 C 0.120 3.880 13 H 0.051 0.949 14 C -0.148 4.148 15 C 0.139 3.861 16 N -0.612 5.612 17 C 0.178 3.822 18 C -0.243 4.243 19 H 0.085 0.915 20 C -0.040 4.040 21 N -0.932 5.932 22 Si 0.924 3.076 23 H -0.291 1.291 24 H -0.309 1.309 25 H -0.245 1.245 26 H 0.088 0.912 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.033 0.967 32 H 0.091 0.909 33 H 0.405 0.595 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.079 0.921 39 H -0.007 1.007 40 H 0.017 0.983 41 H 0.029 0.971 42 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.889 -4.394 -1.834 12.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.052 4.052 3 C -0.194 4.194 4 C -0.052 4.052 5 N -0.123 5.123 6 N -0.263 5.263 7 S 0.599 5.401 8 C -0.436 4.436 9 C 0.383 3.617 10 O -0.437 6.437 11 N -0.324 5.324 12 C 0.013 3.987 13 H 0.070 0.930 14 C -0.207 4.207 15 C 0.013 3.987 16 N -0.335 5.335 17 C 0.033 3.967 18 C -0.373 4.373 19 H 0.102 0.898 20 C -0.236 4.236 21 N -0.579 5.579 22 Si 0.753 3.247 23 H -0.218 1.218 24 H -0.237 1.237 25 H -0.168 1.168 26 H 0.107 0.893 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.124 0.876 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.109 0.891 33 H 0.241 0.759 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.012 0.988 40 H 0.036 0.964 41 H 0.047 0.953 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -11.946 -4.059 -0.565 12.630 hybrid contribution 0.809 0.921 0.134 1.233 sum -11.137 -3.137 -0.431 11.579 Atomic orbital electron populations 1.21746 0.91306 1.02238 1.03593 1.20203 0.98032 0.96146 0.90783 1.21778 1.00028 0.93960 1.03684 1.23227 0.94852 0.92474 0.94654 1.70516 1.20969 1.24616 0.96210 1.78679 1.14401 1.08391 1.24833 1.82530 1.36949 1.26824 0.93795 1.27906 1.09831 1.05066 1.00795 1.16506 0.78891 0.80305 0.85950 1.90667 1.60904 1.67777 1.24339 1.45720 1.48219 1.26987 1.11455 1.21910 0.95806 0.94053 0.86887 0.93022 1.22053 0.97846 0.98435 1.02367 1.21446 0.87119 0.91496 0.98676 1.44138 1.35460 1.49678 1.04179 1.20502 0.91882 0.93326 0.91011 1.19464 1.35000 0.99573 0.83293 0.89788 1.25523 1.02767 0.95650 0.99661 1.70235 1.48529 1.05119 1.34000 0.85886 0.79128 0.76406 0.83248 1.21822 1.23669 1.16829 0.89314 0.91864 0.92998 0.87588 0.91758 0.94736 0.89055 0.75925 0.90973 0.93750 0.89587 0.91051 0.90242 0.98845 0.96406 0.95262 0.95026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 9.16 71.98 0.66 -2.33 16 2 C -0.03 -0.87 3.25 -11.54 -0.04 -0.91 16 3 C -0.14 -3.67 9.16 71.98 0.66 -3.01 16 4 C 0.10 3.26 5.53 42.65 0.24 3.49 16 5 N -0.26 -8.88 11.51 -48.18 -0.55 -9.44 16 6 N -0.28 -9.61 12.51 37.02 0.46 -9.15 16 7 S 0.46 14.66 23.04 -56.49 -1.30 13.36 16 8 C -0.30 -10.48 6.80 24.62 0.17 -10.31 16 9 C 0.60 22.83 7.77 86.59 0.67 23.50 16 10 O -0.56 -23.12 14.21 -4.10 -0.06 -23.18 16 11 N -0.68 -23.82 4.48 -446.05 -2.00 -25.82 16 12 C 0.12 3.92 2.88 44.99 0.13 4.05 16 13 H 0.05 2.02 7.58 -2.39 -0.02 2.00 16 14 C -0.15 -3.60 9.48 71.98 0.68 -2.92 16 15 C 0.14 4.54 5.36 86.38 0.46 5.01 16 16 N -0.61 -26.63 2.82 -726.95 -2.05 -28.68 16 17 C 0.18 8.28 9.01 127.77 1.15 9.43 16 18 C -0.24 -11.33 8.02 84.03 0.67 -10.66 16 19 H 0.08 3.61 7.84 -2.91 -0.02 3.59 16 20 C -0.04 -2.06 5.13 84.86 0.44 -1.62 16 21 N -0.93 -52.51 10.58 21.65 0.23 -52.28 16 22 Si 0.92 41.28 29.57 68.60 2.03 43.31 16 23 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 24 H -0.31 -14.71 7.11 99.48 0.71 -14.01 16 25 H -0.24 -9.68 7.11 99.48 0.71 -8.97 16 26 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.11 3.51 5.49 -2.39 -0.01 3.49 16 30 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.40 13.82 6.83 -92.71 -0.63 13.19 16 34 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.07 2.07 8.03 -2.38 -0.02 2.05 16 38 H 0.08 2.26 7.86 -2.39 -0.02 2.24 16 39 H -0.01 -0.36 7.42 -2.39 -0.02 -0.38 16 40 H 0.02 0.89 7.19 -2.39 -0.02 0.87 16 41 H 0.03 1.14 7.84 -2.39 -0.02 1.12 16 42 H 0.24 13.68 8.31 -92.71 -0.77 12.91 16 Total: -1.00 -62.52 359.28 3.05 -59.47 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.40 Total: 18.69 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 5.89 Total: 13.72 kcal Atomic # 7 Polarization: -121.46 SS G_CDS: -3.91 Total: -125.37 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.06 Total: -23.18 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Atomic # 16 Polarization: 14.66 SS G_CDS: -1.30 Total: 13.36 kcal Total: -62.52 3.05 -59.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754329283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.957 kcal (2) G-P(sol) polarization free energy of solvation -62.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds