Wall clock time and date at job start Tue Mar 31 2020 09:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47591 * 2 1 4 4 C 1.50703 * 109.46692 * 120.00357 * 2 1 3 5 5 N 1.31243 * 124.05454 * 299.69643 * 4 2 1 6 6 N 1.27332 * 120.04108 * 179.73284 * 5 4 2 7 7 S 1.56646 * 109.73802 * 0.52447 * 6 5 4 8 8 C 1.38247 * 124.05817 * 120.00185 * 4 2 1 9 9 C 1.47170 * 128.47309 * 359.97162 * 8 4 2 10 10 O 1.21620 * 120.00297 * 0.02562 * 9 8 4 11 11 N 1.34772 * 119.99666 * 180.02562 * 9 8 4 12 12 C 1.46505 * 120.00030 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.46704 * 324.99460 * 12 11 9 14 14 C 1.52998 * 109.47504 * 84.99511 * 12 11 9 15 15 C 1.53003 * 109.47100 * 204.99844 * 12 11 9 16 16 N 1.46502 * 109.46890 * 54.99929 * 15 12 11 17 17 C 1.46507 * 119.99738 * 269.99539 * 16 15 12 18 18 C 1.36933 * 120.00352 * 90.00261 * 16 15 12 19 19 H 1.08001 * 119.99735 * 23.64076 * 18 16 15 20 20 C 1.38812 * 120.00298 * 203.64330 * 18 16 15 21 21 N 1.31620 * 119.99691 * 11.25989 * 20 18 16 22 22 Si 1.86801 * 120.00217 * 191.25994 * 20 18 16 23 23 H 1.48498 * 109.46634 * 90.00297 * 22 20 18 24 24 H 1.48503 * 109.46673 * 210.00064 * 22 20 18 25 25 H 1.48498 * 109.47165 * 330.00131 * 22 20 18 26 26 H 1.09005 * 109.46692 * 59.99957 * 1 2 3 27 27 H 1.08998 * 109.46895 * 300.00508 * 1 2 3 28 28 H 1.08993 * 109.47596 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46895 * 239.99492 * 2 1 3 30 30 H 1.09010 * 109.46800 * 59.99686 * 3 2 1 31 31 H 1.08995 * 109.47362 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46903 * 300.00593 * 3 2 1 33 33 H 0.97003 * 120.00431 * 359.97438 * 11 9 8 34 34 H 1.08995 * 109.47097 * 179.97438 * 14 12 11 35 35 H 1.09000 * 109.47321 * 300.00755 * 14 12 11 36 36 H 1.09007 * 109.46879 * 60.00311 * 14 12 11 37 37 H 1.08997 * 109.46808 * 174.99618 * 15 12 11 38 38 H 1.08995 * 109.46605 * 294.99618 * 15 12 11 39 39 H 1.08994 * 109.46839 * 94.58486 * 17 16 15 40 40 H 1.08992 * 109.46788 * 214.58894 * 17 16 15 41 41 H 1.09001 * 109.46794 * 334.58713 * 17 16 15 42 42 H 0.97000 * 119.99791 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7693 -0.3288 2.4583 6 7 2.2300 -0.9903 3.4440 7 16 3.0823 -2.1957 2.9201 8 6 2.8302 -1.8391 1.2013 9 6 3.3444 -2.5669 0.0301 10 8 3.0731 -2.1832 -1.0916 11 7 4.1158 -3.6588 0.2007 12 6 4.6282 -4.3831 -0.9652 13 1 3.8873 -4.3557 -1.7642 14 6 5.9223 -3.7242 -1.4469 15 6 4.9089 -5.8368 -0.5796 16 7 3.6990 -6.4325 -0.0070 17 6 3.4560 -6.3537 1.4356 18 6 2.7955 -7.0629 -0.8202 19 1 3.1123 -7.4611 -1.7728 20 6 1.4723 -7.1902 -0.4201 21 7 1.0336 -6.5210 0.6249 22 14 0.3146 -8.3111 -1.3649 23 1 0.3623 -9.6762 -0.7823 24 1 -1.0701 -7.7822 -1.2740 25 1 0.7311 -8.3658 -2.7892 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 4.3326 -3.9646 1.0953 34 1 6.3036 -4.2634 -2.3140 35 1 5.7223 -2.6885 -1.7215 36 1 6.6632 -3.7516 -0.6478 37 1 5.2051 -6.3972 -1.4663 38 1 5.7127 -5.8688 0.1558 39 1 2.8269 -5.4902 1.6514 40 1 2.9539 -7.2617 1.7694 41 1 4.4065 -6.2507 1.9590 42 1 0.1089 -6.6096 0.9042 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754329284.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:07 Heat of formation + Delta-G solvation = 46.970428 kcal Electronic energy + Delta-G solvation = -24796.631470 eV Core-core repulsion = 21325.993768 eV Total energy + Delta-G solvation = -3470.637702 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.91823 -39.27018 -36.53104 -35.42335 -34.13429 -31.83971 -30.90759 -30.05797 -27.21188 -27.08167 -26.27176 -25.67777 -23.55545 -22.03971 -21.40180 -20.26567 -20.05906 -17.80416 -17.19874 -16.81721 -15.84175 -15.67178 -15.09704 -14.92101 -14.51682 -14.14360 -13.95209 -13.72448 -13.31836 -13.08399 -12.99025 -12.85127 -12.25205 -12.23007 -12.11533 -12.08587 -11.53017 -11.26679 -11.19889 -11.08689 -10.90572 -10.85506 -10.81542 -10.62526 -10.30418 -10.17635 -10.02870 -9.92570 -9.65880 -9.58940 -9.54077 -8.72700 -8.52941 -6.83146 -5.79386 -3.26133 -0.08822 0.97375 1.62219 2.09933 3.26323 3.35400 3.42313 3.43401 3.47849 4.00156 4.45521 4.62584 4.93005 5.13346 5.20103 5.23576 5.27543 5.41103 5.58859 5.70226 5.73116 5.77650 5.88860 5.89617 5.96258 6.01095 6.08878 6.13183 6.31500 6.38043 6.40250 6.47819 6.54596 6.75978 6.95282 7.22850 7.56069 7.72782 7.75056 7.85925 8.32354 8.46625 9.16071 9.78128 10.25876 11.25770 Molecular weight = 312.14amu Principal moments of inertia in cm(-1) A = 0.013098 B = 0.004956 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.176420 B = 5648.333408 C = 6027.554948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.027 4.027 3 C -0.139 4.139 4 C 0.099 3.901 5 N -0.248 5.248 6 N -0.265 5.265 7 S 0.415 5.585 8 C -0.271 4.271 9 C 0.605 3.395 10 O -0.524 6.524 11 N -0.686 5.686 12 C 0.117 3.883 13 H 0.091 0.909 14 C -0.160 4.160 15 C 0.142 3.858 16 N -0.597 5.597 17 C 0.159 3.841 18 C -0.257 4.257 19 H 0.069 0.931 20 C 0.007 3.993 21 N -0.905 5.905 22 Si 0.904 3.096 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.279 1.279 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.123 0.877 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.394 0.606 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.043 0.957 39 H 0.030 0.970 40 H 0.045 0.955 41 H -0.004 1.004 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.142 10.437 1.919 12.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.049 4.049 3 C -0.197 4.197 4 C -0.048 4.048 5 N -0.113 5.113 6 N -0.246 5.246 7 S 0.552 5.448 8 C -0.412 4.412 9 C 0.388 3.612 10 O -0.402 6.402 11 N -0.335 5.335 12 C 0.010 3.990 13 H 0.109 0.891 14 C -0.219 4.219 15 C 0.013 3.987 16 N -0.319 5.319 17 C 0.014 3.986 18 C -0.387 4.387 19 H 0.087 0.913 20 C -0.192 4.192 21 N -0.549 5.549 22 Si 0.734 3.266 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.205 1.205 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.141 0.859 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.229 0.771 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.048 0.952 40 H 0.064 0.936 41 H 0.014 0.986 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.801 10.633 3.213 13.024 hybrid contribution -0.983 -0.601 -1.258 1.706 sum 5.818 10.032 1.956 11.760 Atomic orbital electron populations 1.21796 0.93330 1.02541 1.02265 1.20123 0.96585 0.95787 0.92404 1.21789 1.00954 0.94543 1.02402 1.22843 0.94910 0.92963 0.94082 1.70483 1.20083 1.24554 0.96219 1.78825 1.14158 1.07257 1.24340 1.82560 1.39419 1.27831 0.95012 1.27903 1.09753 1.03405 1.00112 1.16337 0.78420 0.80491 0.85975 1.90710 1.58709 1.67381 1.23423 1.45709 1.50314 1.26814 1.10652 1.22020 0.95038 0.93878 0.88100 0.89078 1.22165 0.97669 1.01105 1.00991 1.21229 0.90012 0.89607 0.97831 1.43900 1.21320 1.63517 1.03204 1.20877 0.93948 1.01344 0.82417 1.19171 0.88577 1.29227 1.01723 0.91330 1.25019 0.96674 0.99246 0.98249 1.70022 1.15242 1.42260 1.27399 0.86264 0.80409 0.80325 0.79575 1.21517 1.21803 1.20452 0.91624 0.92070 0.92331 0.85924 0.92023 0.92815 0.91632 0.77135 0.91715 0.92797 0.93051 0.91897 0.93849 0.95221 0.93641 0.98555 0.93816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.16 37.16 0.34 -1.55 16 2 C -0.03 -0.39 3.25 -91.77 -0.30 -0.69 16 3 C -0.14 -1.64 9.16 37.16 0.34 -1.30 16 4 C 0.10 1.60 5.53 -82.84 -0.46 1.15 16 5 N -0.25 -4.05 11.51 33.42 0.38 -3.67 16 6 N -0.27 -4.21 12.51 60.35 0.75 -3.45 16 7 S 0.42 5.88 23.05 -107.50 -2.48 3.40 16 8 C -0.27 -4.50 6.81 -35.95 -0.24 -4.74 16 9 C 0.60 11.10 7.77 -12.64 -0.10 11.00 16 10 O -0.52 -10.70 14.21 5.26 0.07 -10.63 16 11 N -0.69 -11.81 4.41 -54.96 -0.24 -12.05 16 12 C 0.12 2.02 2.88 -67.93 -0.20 1.82 16 13 H 0.09 1.90 7.58 -51.93 -0.39 1.51 16 14 C -0.16 -2.18 9.48 37.16 0.35 -1.83 16 15 C 0.14 2.55 5.33 -4.04 -0.02 2.52 16 16 N -0.60 -13.61 2.78 -181.12 -0.50 -14.11 16 17 C 0.16 3.50 7.61 59.85 0.46 3.96 16 18 C -0.26 -6.69 9.66 -15.06 -0.15 -6.84 16 19 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 20 C 0.01 0.18 5.13 -17.43 -0.09 0.10 16 21 N -0.90 -25.27 10.66 55.49 0.59 -24.67 16 22 Si 0.90 21.58 29.57 -169.99 -5.03 16.55 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.12 1.98 5.49 -51.93 -0.29 1.70 16 30 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.39 6.25 6.60 -40.82 -0.27 5.98 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 37 H 0.06 1.10 8.03 -51.93 -0.42 0.68 16 38 H 0.04 0.68 7.86 -51.93 -0.41 0.27 16 39 H 0.03 0.69 6.90 -51.93 -0.36 0.34 16 40 H 0.04 1.12 7.30 -51.93 -0.38 0.74 16 41 H 0.00 -0.07 7.84 -51.93 -0.41 -0.48 16 42 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 358.82 15.07 5.41 5.41 Total: -1.00 -30.12 358.82 -7.37 -37.48 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.27 Total: 2.14 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -0.06 Total: 3.59 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: 0.99 Total: -57.96 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.07 Total: -10.63 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Atomic # 16 Polarization: 5.88 SS G_CDS: -2.48 Total: 3.40 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.12 -7.37 -37.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754329284.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.455 kcal (2) G-P(sol) polarization free energy of solvation -30.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds