Wall clock time and date at job start Tue Mar 31 2020 09:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47591 * 2 1 4 4 C 1.50703 * 109.46692 * 120.00357 * 2 1 3 5 5 N 1.31243 * 124.05454 * 299.69643 * 4 2 1 6 6 N 1.27332 * 120.04108 * 179.73284 * 5 4 2 7 7 S 1.56646 * 109.73802 * 0.52447 * 6 5 4 8 8 C 1.38247 * 124.05817 * 120.00185 * 4 2 1 9 9 C 1.47170 * 128.47309 * 359.97162 * 8 4 2 10 10 O 1.21620 * 120.00297 * 0.02562 * 9 8 4 11 11 N 1.34772 * 119.99666 * 180.02562 * 9 8 4 12 12 C 1.46505 * 120.00030 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.46704 * 324.99460 * 12 11 9 14 14 C 1.52998 * 109.47504 * 84.99511 * 12 11 9 15 15 C 1.53003 * 109.47100 * 204.99844 * 12 11 9 16 16 N 1.46502 * 109.46890 * 54.99929 * 15 12 11 17 17 C 1.46507 * 119.99738 * 269.99539 * 16 15 12 18 18 C 1.36933 * 120.00352 * 90.00261 * 16 15 12 19 19 H 1.08001 * 119.99735 * 23.64076 * 18 16 15 20 20 C 1.38812 * 120.00298 * 203.64330 * 18 16 15 21 21 N 1.31620 * 119.99691 * 11.25989 * 20 18 16 22 22 Si 1.86801 * 120.00217 * 191.25994 * 20 18 16 23 23 H 1.48498 * 109.46634 * 90.00297 * 22 20 18 24 24 H 1.48503 * 109.46673 * 210.00064 * 22 20 18 25 25 H 1.48498 * 109.47165 * 330.00131 * 22 20 18 26 26 H 1.09005 * 109.46692 * 59.99957 * 1 2 3 27 27 H 1.08998 * 109.46895 * 300.00508 * 1 2 3 28 28 H 1.08993 * 109.47596 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46895 * 239.99492 * 2 1 3 30 30 H 1.09010 * 109.46800 * 59.99686 * 3 2 1 31 31 H 1.08995 * 109.47362 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46903 * 300.00593 * 3 2 1 33 33 H 0.97003 * 120.00431 * 359.97438 * 11 9 8 34 34 H 1.08995 * 109.47097 * 179.97438 * 14 12 11 35 35 H 1.09000 * 109.47321 * 300.00755 * 14 12 11 36 36 H 1.09007 * 109.46879 * 60.00311 * 14 12 11 37 37 H 1.08997 * 109.46808 * 174.99618 * 15 12 11 38 38 H 1.08995 * 109.46605 * 294.99618 * 15 12 11 39 39 H 1.08994 * 109.46839 * 94.58486 * 17 16 15 40 40 H 1.08992 * 109.46788 * 214.58894 * 17 16 15 41 41 H 1.09001 * 109.46794 * 334.58713 * 17 16 15 42 42 H 0.97000 * 119.99791 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7693 -0.3288 2.4583 6 7 2.2300 -0.9903 3.4440 7 16 3.0823 -2.1957 2.9201 8 6 2.8302 -1.8391 1.2013 9 6 3.3444 -2.5669 0.0301 10 8 3.0731 -2.1832 -1.0916 11 7 4.1158 -3.6588 0.2007 12 6 4.6282 -4.3831 -0.9652 13 1 3.8873 -4.3557 -1.7642 14 6 5.9223 -3.7242 -1.4469 15 6 4.9089 -5.8368 -0.5796 16 7 3.6990 -6.4325 -0.0070 17 6 3.4560 -6.3537 1.4356 18 6 2.7955 -7.0629 -0.8202 19 1 3.1123 -7.4611 -1.7728 20 6 1.4723 -7.1902 -0.4201 21 7 1.0336 -6.5210 0.6249 22 14 0.3146 -8.3111 -1.3649 23 1 0.3623 -9.6762 -0.7823 24 1 -1.0701 -7.7822 -1.2740 25 1 0.7311 -8.3658 -2.7892 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 4.3326 -3.9646 1.0953 34 1 6.3036 -4.2634 -2.3140 35 1 5.7223 -2.6885 -1.7215 36 1 6.6632 -3.7516 -0.6478 37 1 5.2051 -6.3972 -1.4663 38 1 5.7127 -5.8688 0.1558 39 1 2.8269 -5.4902 1.6514 40 1 2.9539 -7.2617 1.7694 41 1 4.4065 -6.2507 1.9590 42 1 0.1089 -6.6096 0.9042 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754329284.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:06 Heat of formation + Delta-G solvation = 28.011903 kcal Electronic energy + Delta-G solvation = -24797.453574 eV Core-core repulsion = 21325.993768 eV Total energy + Delta-G solvation = -3471.459806 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.16460 -40.68227 -38.10147 -36.59491 -35.76762 -33.36882 -32.52097 -31.40222 -28.48410 -28.08711 -27.95124 -27.38139 -24.85335 -23.47513 -22.82515 -21.70456 -21.42903 -19.03929 -18.77316 -18.45632 -17.18166 -17.03490 -16.78410 -16.25836 -15.92103 -15.55911 -15.30799 -15.22315 -15.04664 -14.53451 -14.10839 -14.07147 -13.74009 -13.48664 -13.39400 -13.07299 -13.06898 -12.85163 -12.68067 -12.53694 -12.29790 -12.26276 -12.19727 -12.03622 -11.97644 -11.82141 -11.68961 -11.44887 -10.92715 -10.88741 -10.79199 -10.62100 -10.03715 -8.71400 -7.81235 -5.27151 -1.34960 -0.24968 0.40030 0.83729 1.44383 1.46353 1.52963 1.87391 2.13153 2.51554 2.78300 3.33774 3.42191 3.64546 3.75290 3.97795 4.13157 4.14568 4.20922 4.42810 4.53831 4.65410 4.76447 4.80282 4.85056 4.89194 4.90492 4.91719 5.04025 5.09867 5.20120 5.27844 5.36718 5.38217 5.42080 5.59636 5.67635 5.78940 6.35640 6.40131 6.57315 7.08733 7.19550 7.91469 8.31646 9.20685 Molecular weight = 312.14amu Principal moments of inertia in cm(-1) A = 0.013098 B = 0.004956 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.176420 B = 5648.333408 C = 6027.554948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.031 4.031 3 C -0.131 4.131 4 C 0.099 3.901 5 N -0.260 5.260 6 N -0.281 5.281 7 S 0.485 5.515 8 C -0.304 4.304 9 C 0.601 3.399 10 O -0.554 6.554 11 N -0.683 5.683 12 C 0.122 3.878 13 H 0.048 0.952 14 C -0.148 4.148 15 C 0.140 3.860 16 N -0.612 5.612 17 C 0.169 3.831 18 C -0.255 4.255 19 H 0.069 0.931 20 C -0.047 4.047 21 N -0.929 5.929 22 Si 0.955 3.045 23 H -0.286 1.286 24 H -0.304 1.304 25 H -0.272 1.272 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.033 0.967 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.401 0.599 34 H 0.081 0.919 35 H 0.043 0.957 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.012 0.988 40 H 0.011 0.989 41 H 0.039 0.961 42 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.855 10.792 2.122 14.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.053 4.053 3 C -0.189 4.189 4 C -0.049 4.049 5 N -0.125 5.125 6 N -0.262 5.262 7 S 0.621 5.379 8 C -0.445 4.445 9 C 0.385 3.615 10 O -0.434 6.434 11 N -0.332 5.332 12 C 0.015 3.985 13 H 0.066 0.934 14 C -0.206 4.206 15 C 0.013 3.987 16 N -0.334 5.334 17 C 0.024 3.976 18 C -0.385 4.385 19 H 0.087 0.913 20 C -0.243 4.243 21 N -0.576 5.576 22 Si 0.785 3.215 23 H -0.213 1.213 24 H -0.231 1.231 25 H -0.197 1.197 26 H 0.107 0.893 27 H 0.084 0.916 28 H 0.052 0.948 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.237 0.763 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.030 0.970 40 H 0.030 0.970 41 H 0.058 0.942 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 8.561 10.979 3.415 14.335 hybrid contribution -1.422 -0.758 -1.297 2.069 sum 7.139 10.221 2.118 12.646 Atomic orbital electron populations 1.21773 0.92684 1.01335 1.03662 1.20187 0.97110 0.97088 0.90950 1.21745 1.00817 0.92740 1.03578 1.23154 0.94349 0.92818 0.94606 1.70536 1.20789 1.25053 0.96130 1.78646 1.14653 1.08085 1.24788 1.82226 1.37302 1.25788 0.92565 1.27864 1.11222 1.04193 1.01213 1.16549 0.78192 0.80650 0.86130 1.90688 1.59718 1.68252 1.24710 1.45704 1.50062 1.26408 1.11028 1.21860 0.95643 0.94014 0.86978 0.93367 1.22046 0.95952 1.00204 1.02433 1.21431 0.88810 0.89445 0.98988 1.44102 1.21958 1.63986 1.03386 1.20689 0.95447 0.98910 0.82543 1.19457 0.89092 1.28305 1.01694 0.91323 1.25624 0.98174 1.01010 0.99450 1.70169 1.14710 1.43873 1.28832 0.85440 0.78208 0.78864 0.78979 1.21287 1.23088 1.19651 0.89313 0.91568 0.94760 0.87875 0.91713 0.92968 0.89529 0.76301 0.90009 0.93765 0.90487 0.91181 0.90317 0.96985 0.96971 0.94227 0.94869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.16 71.98 0.66 -2.98 16 2 C -0.03 -0.90 3.25 -11.54 -0.04 -0.94 16 3 C -0.13 -2.94 9.16 71.98 0.66 -2.28 16 4 C 0.10 3.19 5.53 42.65 0.24 3.42 16 5 N -0.26 -8.37 11.51 -48.18 -0.55 -8.92 16 6 N -0.28 -8.62 12.51 37.02 0.46 -8.16 16 7 S 0.48 13.12 23.05 -56.49 -1.30 11.82 16 8 C -0.30 -10.06 6.81 24.62 0.17 -9.90 16 9 C 0.60 22.17 7.77 86.59 0.67 22.84 16 10 O -0.55 -23.20 14.21 -4.10 -0.06 -23.26 16 11 N -0.68 -22.88 4.41 -446.05 -1.97 -24.85 16 12 C 0.12 4.06 2.88 44.99 0.13 4.19 16 13 H 0.05 2.04 7.58 -2.39 -0.02 2.02 16 14 C -0.15 -3.64 9.48 71.98 0.68 -2.96 16 15 C 0.14 4.69 5.33 86.38 0.46 5.15 16 16 N -0.61 -27.19 2.78 -726.94 -2.02 -29.21 16 17 C 0.17 7.26 7.61 127.77 0.97 8.23 16 18 C -0.25 -13.18 9.66 84.03 0.81 -12.37 16 19 H 0.07 3.48 7.85 -2.91 -0.02 3.46 16 20 C -0.05 -2.56 5.13 84.86 0.44 -2.12 16 21 N -0.93 -52.90 10.66 21.65 0.23 -52.67 16 22 Si 0.96 44.88 29.57 68.60 2.03 46.91 16 23 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 24 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 26 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 27 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.10 3.42 5.49 -2.39 -0.01 3.41 16 30 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.40 12.01 6.60 -92.71 -0.61 11.39 16 34 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.07 2.27 8.03 -2.39 -0.02 2.25 16 38 H 0.08 2.12 7.86 -2.39 -0.02 2.10 16 39 H 0.01 0.55 6.90 -2.39 -0.02 0.54 16 40 H 0.01 0.57 7.30 -2.39 -0.02 0.55 16 41 H 0.04 1.33 7.84 -2.39 -0.02 1.31 16 42 H 0.24 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -66.12 358.82 3.09 -63.03 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.42 Total: 15.02 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 5.85 Total: 10.29 kcal Atomic # 7 Polarization: -119.95 SS G_CDS: -3.85 Total: -123.80 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.06 Total: -23.26 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: 13.12 SS G_CDS: -1.30 Total: 11.82 kcal Total: -66.12 3.09 -63.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754329284.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.039 kcal (2) G-P(sol) polarization free energy of solvation -66.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds