Wall clock time and date at job start Tue Mar 31 2020 10:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38292 * 119.97264 * 2 1 4 4 C 1.38236 * 120.11419 * 180.25537 * 3 2 1 5 5 C 1.38171 * 120.05424 * 359.77268 * 4 3 2 6 6 C 1.38710 * 119.94459 * 359.97438 * 5 4 3 7 7 O 1.35907 * 120.05563 * 180.02562 * 6 5 4 8 8 C 1.38120 * 119.97620 * 179.75567 * 2 1 3 9 9 C 1.50704 * 120.02549 * 359.97438 * 8 2 1 10 10 N 1.46897 * 109.47578 * 278.07019 * 9 8 2 11 11 C 1.46903 * 110.99675 * 287.51207 * 10 9 8 12 12 C 1.50704 * 109.46917 * 295.14352 * 11 10 9 13 13 H 1.07997 * 119.99921 * 358.69498 * 12 11 10 14 14 C 1.37879 * 119.99607 * 178.70067 * 12 11 10 15 15 N 1.31521 * 120.00235 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99840 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47046 * 89.99727 * 16 14 12 18 18 H 1.48494 * 109.46957 * 209.99751 * 16 14 12 19 19 H 1.48501 * 109.47112 * 330.00050 * 16 14 12 20 20 C 1.46894 * 111.00296 * 163.55421 * 10 9 8 21 21 C 1.50702 * 109.47353 * 189.99767 * 20 10 9 22 22 C 1.38672 * 120.41590 * 89.99832 * 21 20 10 23 23 C 1.38632 * 118.42006 * 179.97438 * 22 21 20 24 24 C 1.38229 * 119.15943 * 0.25336 * 23 22 21 25 25 N 1.31852 * 120.76394 * 359.50240 * 24 23 22 26 26 C 1.31887 * 121.72445 * 0.48491 * 25 24 23 27 27 H 1.08994 * 109.46737 * 270.24822 * 1 2 3 28 28 H 1.08991 * 109.47057 * 30.25090 * 1 2 3 29 29 H 1.09001 * 109.46807 * 150.25176 * 1 2 3 30 30 H 1.08003 * 119.94060 * 359.97438 * 3 2 1 31 31 H 1.07999 * 119.97647 * 179.74984 * 4 3 2 32 32 H 1.08004 * 120.02966 * 179.97438 * 5 4 3 33 33 H 0.96701 * 113.99630 * 269.97542 * 7 6 5 34 34 H 1.09007 * 109.47156 * 158.06619 * 9 8 2 35 35 H 1.09004 * 109.46783 * 38.07078 * 9 8 2 36 36 H 1.09003 * 109.47330 * 55.14577 * 11 10 9 37 37 H 1.08999 * 109.47116 * 175.14508 * 11 10 9 38 38 H 0.96995 * 119.99659 * 180.02562 * 15 14 12 39 39 H 1.09005 * 109.46727 * 69.99976 * 20 10 9 40 40 H 1.08996 * 109.47453 * 310.00474 * 20 10 9 41 41 H 1.08001 * 120.78861 * 359.96515 * 22 21 20 42 42 H 1.08000 * 120.41916 * 179.97438 * 23 22 21 43 43 H 1.07996 * 119.61302 * 179.74712 * 24 23 22 44 44 H 1.08005 * 119.61417 * 179.75206 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2014 -0.0053 5 6 4.2752 0.0072 -0.0059 6 6 3.5846 -1.1958 -0.0006 7 8 4.2659 -2.3718 -0.0007 8 6 2.1971 -1.1964 0.0051 9 6 1.4436 -2.5016 0.0113 10 7 1.0309 -2.8224 1.3841 11 6 2.1824 -3.2367 2.1967 12 6 2.7428 -4.5259 1.6534 13 1 2.2760 -5.0019 0.8037 14 6 3.8512 -5.0977 2.2412 15 7 4.4198 -4.5178 3.2757 16 14 4.5453 -6.6961 1.5682 17 1 5.5605 -6.3953 0.5269 18 1 5.1791 -7.4633 2.6704 19 1 3.4482 -7.5001 0.9723 20 6 -0.0167 -3.8520 1.3919 21 6 -0.5858 -3.9792 2.7815 22 6 -1.6701 -3.2068 3.1695 23 6 -2.1606 -3.3577 4.4574 24 6 -1.5533 -4.2628 5.3076 25 7 -0.5265 -4.9842 4.9028 26 6 -0.0340 -4.8673 3.6849 27 1 -0.3632 0.0045 1.0276 28 1 -0.3633 0.8877 -0.5177 29 1 -0.3633 -0.8923 -0.5099 30 1 1.6565 2.1325 -0.0004 31 1 4.1175 2.1382 -0.0094 32 1 5.3552 0.0103 -0.0105 33 1 4.4593 -2.7142 -0.8841 34 1 2.0874 -3.2946 -0.3693 35 1 0.5611 -2.4145 -0.6225 36 1 2.9497 -2.4633 2.1607 37 1 1.8643 -3.3851 3.2286 38 1 5.1998 -4.9199 3.6889 39 1 0.4101 -4.8070 1.0852 40 1 -0.8093 -3.5692 0.6991 41 1 -2.1217 -2.5043 2.4848 42 1 -3.0035 -2.7722 4.7936 43 1 -1.9268 -4.3833 6.3137 44 1 0.8107 -5.4725 3.3905 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237484864.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:11 Heat of formation + Delta-G solvation = 26.319472 kcal Electronic energy + Delta-G solvation = -26492.227135 eV Core-core repulsion = 22988.790332 eV Total energy + Delta-G solvation = -3503.436803 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.81636 -39.45562 -36.58830 -36.21723 -32.75869 -32.56794 -31.71231 -31.01975 -29.59287 -27.11160 -26.78569 -25.70704 -24.09417 -22.97297 -22.17636 -21.36365 -20.62768 -19.45473 -17.43213 -16.65877 -16.32576 -15.88562 -15.70661 -15.40870 -14.94958 -14.67571 -14.49426 -14.20359 -13.54758 -13.32124 -13.20519 -12.93751 -12.91348 -12.55164 -12.45680 -12.28013 -12.18029 -11.61768 -11.38814 -11.28902 -11.00741 -10.99382 -10.78233 -10.74744 -10.60305 -10.13545 -9.94897 -9.73580 -9.55771 -9.26862 -8.86909 -8.45091 -8.28027 -8.18861 -8.02379 -7.14840 -5.89090 -3.95408 1.61760 1.72968 1.76697 1.83720 3.32220 3.40149 3.40732 4.01976 4.35156 4.49331 4.79387 4.98840 5.18903 5.20622 5.22973 5.25196 5.41809 5.44667 5.47828 5.51197 5.60484 5.67816 5.71540 5.85057 5.93930 5.96330 6.06625 6.08069 6.17058 6.36784 6.38430 6.44442 6.52664 6.56465 6.61451 6.80525 6.86730 6.91254 7.11867 7.26155 7.30261 7.37077 7.65918 8.02434 8.07530 8.29879 8.38327 8.38958 8.55784 9.10559 9.68836 11.17142 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.009426 B = 0.006765 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.896043 B = 4138.089290 C = 6405.819625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.057 4.057 3 C -0.144 4.144 4 C -0.110 4.110 5 C -0.163 4.163 6 C 0.134 3.866 7 O -0.461 6.461 8 C -0.089 4.089 9 C 0.099 3.901 10 N -0.528 5.528 11 C 0.189 3.811 12 C -0.532 4.532 13 H 0.051 0.949 14 C 0.076 3.924 15 N -0.882 5.882 16 Si 0.879 3.121 17 H -0.283 1.283 18 H -0.289 1.289 19 H -0.277 1.277 20 C 0.099 3.901 21 C -0.108 4.108 22 C -0.067 4.067 23 C -0.188 4.188 24 C 0.082 3.918 25 N -0.490 5.490 26 C 0.127 3.873 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.375 0.625 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.039 0.961 37 H 0.026 0.974 38 H 0.259 0.741 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.144 0.856 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.013 7.907 -7.009 13.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.058 4.058 3 C -0.163 4.163 4 C -0.128 4.128 5 C -0.181 4.181 6 C 0.088 3.912 7 O -0.268 6.268 8 C -0.090 4.090 9 C -0.028 4.028 10 N -0.252 5.252 11 C 0.064 3.936 12 C -0.571 4.571 13 H 0.069 0.931 14 C -0.127 4.127 15 N -0.521 5.521 16 Si 0.707 3.293 17 H -0.209 1.209 18 H -0.215 1.215 19 H -0.203 1.203 20 C -0.030 4.030 21 C -0.110 4.110 22 C -0.094 4.094 23 C -0.207 4.207 24 C -0.075 4.075 25 N -0.199 5.199 26 C -0.030 4.030 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.229 0.771 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.162 0.838 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -8.713 7.760 -5.463 12.883 hybrid contribution 0.759 -0.951 -1.554 1.974 sum -7.954 6.809 -7.017 12.604 Atomic orbital electron populations 1.20725 0.91407 1.01528 1.02537 1.19597 0.95923 0.92060 0.98198 1.20876 0.94113 0.97177 1.04086 1.20839 0.94163 0.97203 1.00618 1.21374 1.00065 0.92281 1.04418 1.18430 0.89579 0.85757 0.97396 1.85224 1.75441 1.35021 1.31141 1.20046 0.92840 0.95325 1.00821 1.20754 0.97125 0.93303 0.91620 1.62638 1.12805 1.39875 1.09873 1.19786 0.86480 0.95050 0.92264 1.21418 1.12780 1.08047 1.14899 0.93069 1.24800 0.96483 0.96678 0.94767 1.69938 1.21417 1.38955 1.21768 0.86834 0.79341 0.84465 0.78647 1.20928 1.21486 1.20257 1.20836 0.94183 0.96568 0.91371 1.20816 0.95581 0.96523 0.98099 1.21377 0.95338 0.96902 0.95764 1.21974 1.02195 1.01301 0.95279 1.22629 0.92612 0.92901 0.99350 1.67745 1.10805 1.23978 1.17349 1.23079 0.96835 0.95383 0.87682 0.90804 0.92756 0.91513 0.86734 0.86605 0.86207 0.77086 0.92280 0.92282 0.94271 0.95596 0.93138 0.92402 0.92246 0.85609 0.85789 0.83820 0.81644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.60 36.01 0.35 -1.01 16 2 C -0.06 -0.89 5.88 -104.64 -0.62 -1.50 16 3 C -0.14 -2.06 9.70 -39.56 -0.38 -2.44 16 4 C -0.11 -1.58 10.04 -39.61 -0.40 -1.98 16 5 C -0.16 -2.65 9.99 -39.43 -0.39 -3.05 16 6 C 0.13 2.45 5.76 -39.22 -0.23 2.22 16 7 O -0.46 -9.01 11.17 -19.45 -0.22 -9.23 16 8 C -0.09 -1.57 4.87 -104.47 -0.51 -2.08 16 9 C 0.10 1.77 4.26 -4.98 -0.02 1.75 16 10 N -0.53 -10.45 4.64 -238.96 -1.11 -11.56 16 11 C 0.19 4.66 4.32 -4.97 -0.02 4.64 16 12 C -0.53 -13.50 6.21 -34.44 -0.21 -13.72 16 13 H 0.05 1.28 5.95 -52.49 -0.31 0.97 16 14 C 0.08 2.05 5.46 -17.82 -0.10 1.95 16 15 N -0.88 -25.80 13.29 55.43 0.74 -25.06 16 16 Si 0.88 21.02 29.54 -169.99 -5.02 16.00 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.10 1.77 4.91 -4.98 -0.02 1.74 16 21 C -0.11 -1.95 4.89 -104.48 -0.51 -2.46 16 22 C -0.07 -1.04 9.86 -39.28 -0.39 -1.43 16 23 C -0.19 -2.69 10.11 -39.44 -0.40 -3.09 16 24 C 0.08 1.32 11.18 -17.55 -0.20 1.12 16 25 N -0.49 -9.66 10.36 -13.25 -0.14 -9.80 16 26 C 0.13 2.59 9.17 -17.55 -0.16 2.43 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.57 8.09 -51.93 -0.42 0.15 16 29 H 0.07 0.83 6.08 -51.93 -0.32 0.51 16 30 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 31 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 32 H 0.12 1.80 8.06 -52.48 -0.42 1.38 16 33 H 0.37 5.50 9.06 45.56 0.41 5.91 16 34 H 0.06 1.16 5.70 -51.92 -0.30 0.86 16 35 H 0.06 0.91 5.97 -51.93 -0.31 0.60 16 36 H 0.04 1.10 6.18 -51.93 -0.32 0.78 16 37 H 0.03 0.72 6.24 -51.93 -0.32 0.39 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.06 1.13 6.16 -51.93 -0.32 0.81 16 40 H 0.06 0.90 7.81 -51.93 -0.41 0.49 16 41 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 42 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.14 1.85 8.06 -52.49 -0.42 1.42 16 44 H 0.17 3.73 7.44 -52.48 -0.39 3.34 16 LS Contribution 356.02 15.07 5.37 5.37 Total: -1.00 -31.41 356.02 -9.69 -41.10 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -5.10 Total: 10.08 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -4.21 Total: -16.90 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -0.51 Total: -46.42 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -0.22 Total: -9.23 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.41 -9.69 -41.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237484864.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.418 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds