Wall clock time and date at job start Tue Mar 31 2020 09:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00068 * 2 1 4 4 C 1.53000 * 109.46879 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46971 * 180.02562 * 4 3 2 6 6 O 1.42898 * 109.47033 * 179.97438 * 5 4 3 7 7 N 1.41596 * 113.99950 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00056 * 179.97438 * 7 6 5 9 9 O 1.21593 * 119.99953 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99726 * 180.27729 * 8 7 6 11 11 C 1.40196 * 119.99786 * 179.72659 * 10 8 7 12 12 C 1.40403 * 125.97362 * 359.72037 * 11 10 8 13 13 C 1.35241 * 107.87032 * 179.83093 * 12 11 10 14 14 C 1.50704 * 126.07402 * 180.16205 * 13 12 11 15 15 N 1.34964 * 107.85500 * 0.42559 * 13 12 11 16 16 C 1.46503 * 125.97580 * 179.71183 * 15 13 12 17 17 C 1.50699 * 109.47232 * 270.00070 * 16 15 13 18 18 H 1.08004 * 119.99852 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00303 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99755 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99889 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47492 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46992 * 120.00209 * 21 19 17 24 24 H 1.48500 * 109.46936 * 240.00003 * 21 19 17 25 25 N 1.31207 * 125.97268 * 180.02562 * 11 10 8 26 26 H 1.09004 * 109.47701 * 59.99966 * 1 2 3 27 27 H 1.08999 * 109.47330 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47234 * 299.99610 * 1 2 3 29 29 H 1.08997 * 109.47004 * 60.00444 * 3 2 1 30 30 H 1.09003 * 109.47005 * 300.00080 * 3 2 1 31 31 H 1.09003 * 109.47384 * 59.99885 * 4 3 2 32 32 H 1.09003 * 109.47148 * 299.99724 * 4 3 2 33 33 H 1.08997 * 109.46967 * 60.00143 * 5 4 3 34 34 H 1.09003 * 109.46950 * 299.99834 * 5 4 3 35 35 H 0.97000 * 120.00207 * 0.02562 * 7 6 5 36 36 H 0.97000 * 120.00483 * 359.73178 * 10 8 7 37 37 H 1.08001 * 126.06561 * 359.97438 * 12 11 10 38 38 H 1.09000 * 109.46414 * 270.31468 * 14 13 12 39 39 H 1.08994 * 109.47042 * 30.31368 * 14 13 12 40 40 H 1.08993 * 109.47184 * 150.31712 * 14 13 12 41 41 H 1.09001 * 109.47222 * 29.99739 * 16 15 13 42 42 H 1.08997 * 109.47398 * 150.00005 * 16 15 13 43 43 H 0.97000 * 119.99662 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 8 5.5823 2.4694 0.0000 7 7 6.2586 3.7134 0.0000 8 6 7.6059 3.7480 0.0005 9 8 8.2407 2.7109 0.0005 10 7 8.2496 4.9321 0.0062 11 6 9.6511 4.9681 0.0125 12 6 10.5047 3.8533 0.0192 13 6 11.7789 4.3064 0.0201 14 6 13.0231 3.4560 0.0232 15 7 11.7385 5.6554 0.0238 16 6 12.8978 6.5512 0.0318 17 6 13.2885 6.8543 1.4554 18 1 12.7294 6.4225 2.2724 19 6 14.3602 7.6820 1.7148 20 7 15.0419 8.2065 0.7200 21 14 14.8440 8.0582 3.4794 22 1 13.9253 7.3498 4.4064 23 1 16.2367 7.6020 3.7188 24 1 14.7550 9.5216 3.7158 25 7 10.3943 6.0493 0.0188 26 1 -0.3635 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6887 1.8463 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8567 0.6438 -0.8909 32 1 3.8574 0.6435 0.8892 33 1 3.8365 3.1226 0.8904 34 1 3.8358 3.1238 -0.8896 35 1 5.7523 4.5408 0.0004 36 1 7.7432 5.7595 0.0059 37 1 10.1981 2.8178 0.0209 38 1 13.3184 3.2481 1.0516 39 1 12.8231 2.5177 -0.4942 40 1 13.8275 3.9871 -0.4855 41 1 13.7319 6.0705 -0.4793 42 1 12.6436 7.4790 -0.4806 43 1 15.7956 8.7891 0.9025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806381237.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:57 Heat of formation + Delta-G solvation = 13.689356 kcal Electronic energy + Delta-G solvation = -24606.572097 eV Core-core repulsion = 20691.738348 eV Total energy + Delta-G solvation = -3914.833749 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.73708 -39.56470 -38.62603 -37.63838 -34.78213 -33.85143 -33.34513 -31.90187 -31.10036 -30.46869 -27.53255 -26.58624 -26.29703 -25.26509 -23.21854 -22.35921 -21.81862 -19.97368 -19.63684 -18.51488 -17.58916 -17.01718 -16.87445 -16.66992 -16.01108 -15.98819 -15.42593 -15.17862 -15.12719 -14.75667 -14.26413 -14.05624 -13.80844 -13.62112 -13.01633 -12.49494 -12.46344 -12.31395 -12.28021 -12.26005 -12.05554 -11.65489 -11.60468 -11.37969 -11.18698 -11.04556 -10.83668 -10.43411 -10.25382 -10.22818 -10.03071 -9.67947 -9.51734 -9.13013 -8.63437 -7.91707 -7.41189 -6.24262 -4.31529 1.24229 2.64093 3.02249 3.09829 3.21278 3.29183 3.33600 3.39714 3.81573 4.06027 4.23713 4.32197 4.32996 4.57292 4.59005 4.72203 4.77029 4.86226 4.87031 4.96869 5.09672 5.17129 5.40286 5.50380 5.60857 5.70921 5.94086 6.11825 6.16702 6.45267 6.47919 6.50974 6.58971 6.65796 6.98203 7.07263 7.09417 7.48918 7.68994 7.86968 7.90867 8.07917 8.57064 8.67057 8.77196 9.34790 10.83025 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.033460 B = 0.001879 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.623711 B =14894.452183 C =15170.802195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.067 3.933 4 C -0.114 4.114 5 C 0.035 3.965 6 O -0.119 6.119 7 N -0.614 5.614 8 C 0.730 3.270 9 O -0.545 6.545 10 N -0.634 5.634 11 C 0.284 3.716 12 C -0.289 4.289 13 C 0.093 3.907 14 C -0.084 4.084 15 N -0.317 5.317 16 C 0.258 3.742 17 C -0.535 4.535 18 H 0.065 0.935 19 C 0.065 3.935 20 N -0.892 5.892 21 Si 0.906 3.094 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.281 1.281 25 N -0.321 5.321 26 H 0.042 0.958 27 H 0.088 0.912 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.404 0.596 36 H 0.407 0.593 37 H 0.161 0.839 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.977 -10.452 -2.789 27.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.010 4.010 4 C -0.153 4.153 5 C -0.043 4.043 6 O -0.123 6.123 7 N -0.319 5.319 8 C 0.429 3.571 9 O -0.417 6.417 10 N -0.288 5.288 11 C 0.031 3.969 12 C -0.320 4.320 13 C -0.039 4.039 14 C -0.142 4.142 15 N -0.100 5.100 16 C 0.141 3.859 17 C -0.573 4.573 18 H 0.083 0.917 19 C -0.138 4.138 20 N -0.530 5.530 21 Si 0.733 3.267 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.207 1.207 25 N -0.152 5.152 26 H 0.061 0.939 27 H 0.106 0.894 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.244 0.756 36 H 0.242 0.758 37 H 0.179 0.821 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.952 -10.329 -2.837 26.239 hybrid contribution -0.848 0.775 0.959 1.497 sum -24.801 -9.554 -1.878 26.643 Atomic orbital electron populations 1.22773 0.80515 1.03080 1.00112 1.87878 1.20058 1.27487 1.95453 1.22311 0.92855 0.85142 1.00665 1.21271 0.92981 0.95353 1.05681 1.22834 0.80895 0.98838 1.01743 1.90591 1.17318 1.06827 1.97528 1.45915 1.02982 0.99596 1.83427 1.14912 0.79566 0.83981 0.78607 1.90908 1.64263 1.31567 1.54961 1.40997 1.03409 1.07194 1.77211 1.18537 0.81883 0.93400 1.03073 1.21256 0.89552 1.00048 1.21123 1.21056 0.96754 0.85252 1.00811 1.20337 0.93027 0.97668 1.03198 1.48969 1.04020 1.04553 1.52425 1.19694 0.78462 0.88860 0.98929 1.21374 1.14410 1.30120 0.91418 0.91665 1.24924 0.95661 0.95105 0.98111 1.69929 1.20041 1.31949 1.31086 0.86306 0.78384 0.78227 0.83796 1.19584 1.20655 1.20701 1.77247 0.88309 1.19794 1.29853 0.93902 0.89354 0.93904 0.92830 0.92845 0.89485 0.89481 0.91670 0.91676 0.75635 0.75786 0.82123 0.90398 0.90755 0.90863 0.92736 0.92999 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -3.04 10.70 -35.23 -0.38 -3.42 16 3 C 0.07 0.38 5.94 37.16 0.22 0.60 16 4 C -0.11 -0.78 5.95 -26.73 -0.16 -0.94 16 5 C 0.03 0.23 6.23 37.16 0.23 0.46 16 6 O -0.12 -1.40 11.11 -29.62 -0.33 -1.73 16 7 N -0.61 -6.83 6.39 27.64 0.18 -6.66 16 8 C 0.73 11.44 8.68 -86.92 -0.75 10.68 16 9 O -0.54 -10.86 13.88 -12.86 -0.18 -11.04 16 10 N -0.63 -9.81 5.46 -15.51 -0.08 -9.90 16 11 C 0.28 5.81 8.11 -154.36 -1.25 4.56 16 12 C -0.29 -6.07 9.52 -39.83 -0.38 -6.45 16 13 C 0.09 1.97 6.93 -82.28 -0.57 1.40 16 14 C -0.08 -1.46 10.11 36.01 0.36 -1.09 16 15 N -0.32 -7.53 3.59 -58.32 -0.21 -7.74 16 16 C 0.26 6.61 5.99 -5.19 -0.03 6.58 16 17 C -0.53 -14.73 9.39 -34.44 -0.32 -15.05 16 18 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 19 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -25.01 13.29 55.43 0.74 -24.28 16 21 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 N -0.32 -7.37 12.59 31.44 0.40 -6.97 16 26 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.40 2.70 8.56 -40.82 -0.35 2.35 16 36 H 0.41 4.72 8.84 -40.82 -0.36 4.36 16 37 H 0.16 3.37 5.91 -52.49 -0.31 3.06 16 38 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.07 1.27 7.07 -51.93 -0.37 0.90 16 41 H 0.05 1.38 7.04 -51.93 -0.37 1.01 16 42 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 372.41 15.07 5.61 5.61 Total: -1.00 -35.42 372.41 -7.29 -42.71 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -6.37 Total: 3.63 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -1.64 Total: 3.69 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: 1.01 Total: -55.54 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.88 Total: -16.19 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.42 -7.29 -42.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806381237.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.396 kcal (2) G-P(sol) polarization free energy of solvation -35.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds