Wall clock time and date at job start Tue Mar 31 2020 10:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32681 * 1 3 3 C 1.47666 * 119.99954 * 2 1 4 4 C 1.39714 * 119.99430 * 180.02562 * 3 2 1 5 5 C 1.37600 * 120.00134 * 180.02562 * 4 3 2 6 6 C 1.39740 * 119.99704 * 359.97438 * 5 4 3 7 7 C 1.47692 * 120.00240 * 179.97438 * 6 5 4 8 8 O 1.21572 * 120.00145 * 212.45608 * 7 6 5 9 9 N 1.34778 * 120.00019 * 32.73705 * 7 6 5 10 10 C 1.47162 * 120.70593 * 4.84793 * 9 7 6 11 11 C 1.54324 * 107.80236 * 132.67959 * 10 9 7 12 12 H 1.09000 * 112.53381 * 182.37172 * 11 10 9 13 13 C 1.54541 * 107.98747 * 306.74260 * 11 10 9 14 14 C 1.55855 * 105.00035 * 89.00189 * 13 11 10 15 15 C 1.54546 * 104.09575 * 0.02562 * 14 13 11 16 16 H 1.09007 * 112.17843 * 146.81427 * 15 14 13 17 17 C 1.47163 * 120.70968 * 185.12646 * 9 7 6 18 18 N 1.48298 * 104.90852 * 24.75218 * 15 14 13 19 19 C 1.36940 * 128.07587 * 138.82548 * 18 15 14 20 20 H 1.07999 * 120.00521 * 344.99673 * 19 18 15 21 21 C 1.38814 * 119.99814 * 164.98905 * 19 18 15 22 22 N 1.31617 * 120.00158 * 349.53101 * 21 19 18 23 23 Si 1.86806 * 119.99677 * 169.52400 * 21 19 18 24 24 H 1.48502 * 109.46822 * 90.00646 * 23 21 19 25 25 H 1.48505 * 109.46923 * 210.00004 * 23 21 19 26 26 H 1.48491 * 109.47312 * 330.00288 * 23 21 19 27 27 C 1.39740 * 119.99411 * 0.25715 * 6 5 4 28 28 C 1.37600 * 119.99339 * 359.48380 * 27 6 5 29 29 H 1.07999 * 120.00455 * 180.02562 * 1 2 3 30 30 H 1.08005 * 120.00114 * 0.02562 * 1 2 3 31 31 H 1.08005 * 120.00114 * 179.97438 * 2 1 3 32 32 H 1.07994 * 119.99684 * 0.03808 * 4 3 2 33 33 H 1.08004 * 119.99918 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.75063 * 252.38442 * 10 9 7 35 35 H 1.09000 * 109.75536 * 13.12612 * 10 9 7 36 36 H 1.08999 * 110.36473 * 207.85228 * 13 11 10 37 37 H 1.09007 * 110.36091 * 330.06025 * 13 11 10 38 38 H 1.09000 * 110.90208 * 241.33140 * 14 13 11 39 39 H 1.08996 * 110.55009 * 118.52813 * 14 13 11 40 40 H 1.08994 * 109.74620 * 346.87910 * 17 9 7 41 41 H 1.08992 * 109.74914 * 107.56609 * 17 9 7 42 42 H 0.97005 * 120.00092 * 180.02562 * 22 21 19 43 43 H 1.08004 * 120.00566 * 179.74819 * 27 6 5 44 44 H 1.08003 * 119.99809 * 180.23236 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2788 0.0000 4 6 3.4623 1.2787 -0.0005 5 6 4.1504 2.4703 0.0000 6 6 3.4518 3.6805 0.0005 7 6 4.1903 4.9595 0.0017 8 8 3.7247 5.9298 0.5672 9 7 5.3777 5.0526 -0.6290 10 6 5.9032 3.9231 -1.4123 11 6 6.3836 4.4743 -2.7713 12 1 6.7525 3.6906 -3.4332 13 6 5.2190 5.2706 -3.4021 14 6 5.3873 6.7243 -2.8660 15 6 6.6412 6.6506 -1.9656 16 1 7.2160 7.5767 -1.9839 17 6 6.1794 6.2838 -0.5440 18 7 7.4173 5.4989 -2.4858 19 6 8.7721 5.4038 -2.6615 20 1 9.3828 6.2943 -2.6441 21 6 9.3605 4.1625 -2.8617 22 7 8.6583 3.0643 -2.6795 23 14 11.1488 4.0510 -3.3901 24 1 12.0175 3.9918 -2.1871 25 1 11.3485 2.8261 -4.2055 26 1 11.5019 5.2462 -4.1974 27 6 2.0544 3.6805 0.0060 28 6 1.3666 2.4887 0.0000 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8669 -0.9353 0.0004 32 1 4.0021 0.3434 -0.0016 33 1 5.2305 2.4701 -0.0008 34 1 6.7373 3.4635 -0.8821 35 1 5.1155 3.1864 -1.5705 36 1 5.2954 5.2573 -4.4893 37 1 4.2614 4.8575 -3.0847 38 1 4.5180 7.0266 -2.2820 39 1 5.5522 7.4191 -3.6895 40 1 5.5723 7.0910 -0.1341 41 1 7.0469 6.1151 0.0938 42 1 9.0696 2.1969 -2.8191 43 1 1.5143 4.6157 0.0105 44 1 0.2865 2.4886 0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029487561.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:10 Heat of formation + Delta-G solvation = 60.389859 kcal Electronic energy + Delta-G solvation = -26519.750724 eV Core-core repulsion = 23017.791324 eV Total energy + Delta-G solvation = -3501.959400 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.158 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.41860 -38.89719 -37.52528 -34.42922 -33.65416 -32.45177 -31.07320 -30.70412 -29.40789 -29.20050 -26.32547 -24.33972 -24.05197 -23.28033 -22.39475 -20.40174 -19.74334 -19.60681 -18.76348 -17.54043 -16.29538 -15.98130 -15.84746 -15.37808 -14.93222 -14.55952 -14.38720 -13.89696 -13.78090 -13.54481 -13.22420 -13.07365 -12.93897 -12.75907 -12.70678 -12.11269 -11.78128 -11.72795 -11.62530 -11.29539 -11.12505 -10.94744 -10.83540 -10.78633 -10.38932 -10.33168 -10.08373 -9.87864 -9.64055 -9.58782 -9.41460 -8.95399 -8.73418 -8.26410 -8.04664 -6.86721 -5.89838 -3.22908 0.65388 1.45321 2.25784 3.25543 3.32937 3.39759 3.40668 3.56500 4.02378 4.38948 4.60807 4.72850 4.90662 4.96809 5.12600 5.19104 5.29583 5.36805 5.42008 5.61364 5.63209 5.71732 5.79484 5.86368 5.92014 5.98270 6.05939 6.08898 6.18113 6.22502 6.29575 6.38262 6.46756 6.47438 6.52270 6.60490 6.63235 6.67823 6.70083 6.87658 6.90043 6.96020 7.22465 7.42814 7.62199 8.03784 8.09818 8.64665 9.01494 9.63723 10.40812 11.24067 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.016781 B = 0.004248 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.146145 B = 6589.090951 C = 7625.727622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.115 4.115 3 C -0.047 4.047 4 C -0.116 4.116 5 C -0.085 4.085 6 C -0.120 4.120 7 C 0.548 3.452 8 O -0.561 6.561 9 N -0.583 5.583 10 C 0.092 3.908 11 C 0.168 3.832 12 H 0.118 0.882 13 C -0.135 4.135 14 C -0.124 4.124 15 C 0.134 3.866 16 H 0.078 0.922 17 C 0.102 3.898 18 N -0.584 5.584 19 C -0.224 4.224 20 H 0.076 0.924 21 C -0.003 4.003 22 N -0.916 5.916 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C -0.066 4.066 28 C -0.126 4.126 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.129 0.871 33 H 0.143 0.857 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.254 0.746 43 H 0.130 0.870 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.735 -4.180 3.075 13.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.133 4.133 3 C -0.048 4.048 4 C -0.134 4.134 5 C -0.103 4.103 6 C -0.123 4.123 7 C 0.336 3.664 8 O -0.443 6.443 9 N -0.313 5.313 10 C -0.031 4.031 11 C 0.060 3.940 12 H 0.136 0.864 13 C -0.174 4.174 14 C -0.164 4.164 15 C 0.025 3.975 16 H 0.096 0.904 17 C -0.023 4.023 18 N -0.305 5.305 19 C -0.352 4.352 20 H 0.094 0.906 21 C -0.200 4.200 22 N -0.562 5.562 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.207 1.207 27 C -0.085 4.085 28 C -0.144 4.144 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.137 0.863 32 H 0.147 0.853 33 H 0.161 0.839 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.148 0.852 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.690 -3.827 3.294 13.658 hybrid contribution 1.000 -0.266 -0.210 1.056 sum -11.690 -4.093 3.084 12.764 Atomic orbital electron populations 1.24401 0.95705 1.02218 0.99510 1.21857 0.95221 0.95868 1.00359 1.19254 0.93428 0.93078 0.98991 1.21215 0.93075 0.98241 1.00895 1.21739 1.01294 0.91340 0.95923 1.20071 0.94231 0.93580 1.04424 1.18309 0.81185 0.87580 0.79287 1.90706 1.68301 1.38392 1.46869 1.48119 1.18374 1.16581 1.48240 1.23168 0.97934 0.87127 0.94898 1.21951 0.86097 0.93009 0.92907 0.86400 1.22889 0.98888 0.96055 0.99565 1.22743 0.97860 0.96972 0.98791 1.21960 0.91955 0.92827 0.90726 0.90438 1.22395 0.94094 0.86162 0.99631 1.45176 1.01777 1.11025 1.72549 1.19014 0.80746 0.92790 1.42657 0.90581 1.24792 0.98020 0.95242 1.01922 1.69825 1.35777 0.96820 1.53780 0.86140 0.84363 0.77114 0.78222 1.21584 1.21597 1.20696 1.21083 0.92676 0.98408 0.96325 1.21169 0.99790 0.91489 1.01979 0.87825 0.88002 0.86279 0.85275 0.83896 0.89675 0.90845 0.92760 0.93188 0.92493 0.92675 0.90583 0.91850 0.93540 0.85178 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.47 14.15 28.84 0.41 -1.06 16 2 C -0.12 -1.10 9.90 -37.62 -0.37 -1.48 16 3 C -0.05 -0.57 5.87 -104.95 -0.62 -1.18 16 4 C -0.12 -1.48 9.76 -39.26 -0.38 -1.87 16 5 C -0.08 -1.26 7.38 -39.25 -0.29 -1.55 16 6 C -0.12 -1.96 5.36 -104.91 -0.56 -2.52 16 7 C 0.55 10.45 7.42 -12.40 -0.09 10.36 16 8 O -0.56 -11.99 16.21 5.30 0.09 -11.90 16 9 N -0.58 -11.24 2.25 -172.42 -0.39 -11.62 16 10 C 0.09 1.81 4.07 -2.99 -0.01 1.80 16 11 C 0.17 3.63 3.13 -65.42 -0.20 3.43 16 12 H 0.12 2.87 6.41 -51.93 -0.33 2.54 16 13 C -0.13 -2.56 6.22 -24.40 -0.15 -2.71 16 14 C -0.12 -2.29 6.31 -24.40 -0.15 -2.44 16 15 C 0.13 2.68 4.27 -65.65 -0.28 2.40 16 16 H 0.08 1.48 8.14 -51.92 -0.42 1.06 16 17 C 0.10 1.99 5.91 -3.21 -0.02 1.97 16 18 N -0.58 -13.63 2.81 -152.32 -0.43 -14.06 16 19 C -0.22 -5.76 10.37 -15.06 -0.16 -5.91 16 20 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 21 C 0.00 -0.07 5.41 -17.43 -0.09 -0.17 16 22 N -0.92 -24.01 10.44 55.49 0.58 -23.43 16 23 Si 0.91 20.79 29.57 -169.99 -5.03 15.76 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 C -0.07 -0.95 9.58 -39.25 -0.38 -1.33 16 28 C -0.13 -1.54 9.38 -39.26 -0.37 -1.91 16 29 H 0.10 0.65 8.06 -52.49 -0.42 0.23 16 30 H 0.10 0.77 6.02 -52.48 -0.32 0.46 16 31 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 32 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.14 2.22 5.58 -52.48 -0.29 1.93 16 34 H 0.09 1.90 7.46 -51.93 -0.39 1.51 16 35 H 0.07 1.32 4.73 -51.93 -0.25 1.07 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.90 7.85 -51.92 -0.41 0.50 16 38 H 0.06 1.03 7.84 -51.93 -0.41 0.62 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.08 1.44 7.08 -51.93 -0.37 1.08 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 43 H 0.13 1.81 7.95 -52.48 -0.42 1.39 16 44 H 0.13 1.22 6.15 -52.48 -0.32 0.89 16 LS Contribution 347.04 15.07 5.23 5.23 Total: -1.00 -28.56 347.04 -9.67 -38.23 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.00 Total: 5.97 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -3.72 Total: -4.17 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: -0.24 Total: -49.11 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.09 Total: -11.90 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.56 -9.67 -38.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029487561.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.621 kcal (2) G-P(sol) polarization free energy of solvation -28.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds