Wall clock time and date at job start Tue Mar 31 2020 10:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39714 * 119.99500 * 183.25002 * 3 2 1 5 5 C 1.37602 * 120.00306 * 180.02562 * 4 3 2 6 6 C 1.39747 * 119.99737 * 359.97438 * 5 4 3 7 7 C 1.47683 * 120.00189 * 180.02562 * 6 5 4 8 8 O 1.21576 * 120.00235 * 352.10951 * 7 6 5 9 9 N 1.34778 * 120.00058 * 172.11150 * 7 6 5 10 10 C 1.47027 * 125.64745 * 5.07820 * 9 7 6 11 11 C 1.54310 * 107.27972 * 180.96865 * 10 9 7 12 12 C 1.55165 * 102.86014 * 22.52475 * 11 10 9 13 13 H 1.09000 * 111.00165 * 82.38110 * 12 11 10 14 14 C 1.52998 * 111.00423 * 206.22741 * 12 11 10 15 15 C 1.52995 * 109.47236 * 178.65135 * 14 12 11 16 16 N 1.46502 * 109.47437 * 180.02562 * 15 14 12 17 17 C 1.36929 * 120.00350 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99942 * 359.97438 * 17 16 15 19 19 C 1.38808 * 120.00177 * 179.97438 * 17 16 15 20 20 N 1.31615 * 120.00285 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00198 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47060 * 89.99721 * 21 19 17 23 23 H 1.48491 * 109.47118 * 209.99955 * 21 19 17 24 24 H 1.48505 * 109.46756 * 330.00283 * 21 19 17 25 25 C 1.47423 * 125.65233 * 185.38782 * 9 7 6 26 26 C 1.39742 * 119.99178 * 359.97438 * 6 5 4 27 27 C 1.37601 * 119.99538 * 0.04313 * 26 6 5 28 28 H 4.51949 * 14.06547 * 0.02562 * 4 2 1 29 29 H 1.08000 * 119.99997 * 359.97438 * 4 3 2 30 30 H 1.08008 * 120.00060 * 179.70350 * 5 4 3 31 31 H 1.08996 * 109.87846 * 300.51821 * 10 9 7 32 32 H 1.09006 * 109.87851 * 61.67599 * 10 9 7 33 33 H 1.09000 * 110.92245 * 264.11703 * 11 10 9 34 34 H 1.08998 * 110.74386 * 140.85702 * 11 10 9 35 35 H 1.09003 * 109.47152 * 298.65462 * 14 12 11 36 36 H 1.09004 * 109.46875 * 58.65162 * 14 12 11 37 37 H 1.09003 * 109.47317 * 300.00225 * 15 14 12 38 38 H 1.09004 * 109.47167 * 60.00205 * 15 14 12 39 39 H 0.96997 * 119.99529 * 359.97438 * 16 15 14 40 40 H 0.96994 * 120.00473 * 180.02562 * 20 19 17 41 41 H 1.09000 * 110.36561 * 274.67354 * 25 9 7 42 42 H 1.08999 * 110.36693 * 36.99107 * 25 9 7 43 43 H 1.08000 * 119.99842 * 180.02562 * 26 6 5 44 44 H 1.07997 * 119.99418 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.3038 1.2090 0.0686 5 6 4.6799 1.2099 0.0681 6 6 5.3793 0.0020 -0.0005 7 6 6.8561 0.0027 -0.0005 8 8 7.4635 1.0524 -0.0857 9 7 7.5306 -1.1603 0.0939 10 6 6.9291 -2.5019 0.0966 11 6 8.0792 -3.5196 0.2473 12 6 9.2059 -2.6736 0.8972 13 1 9.0679 -2.6022 1.9761 14 6 10.5846 -3.2446 0.5596 15 6 11.6682 -2.3666 1.1885 16 7 12.9884 -2.9130 0.8647 17 6 14.1184 -2.2905 1.3236 18 1 14.0365 -1.3964 1.9239 19 6 15.3693 -2.8085 1.0172 20 7 15.4692 -3.8983 0.2861 21 14 16.9109 -1.9588 1.6426 22 1 17.2797 -2.5158 2.9688 23 1 18.0231 -2.1835 0.6847 24 1 16.6552 -0.5016 1.7714 25 6 8.9931 -1.2978 0.2179 26 6 4.6810 -1.2066 -0.0681 27 6 3.3050 -1.2071 -0.0679 28 1 -1.0501 -0.0011 0.0004 29 1 2.7633 2.1426 0.1212 30 1 5.2194 2.1443 0.1163 31 1 6.2364 -2.5959 0.9329 32 1 6.4044 -2.6748 -0.8431 33 1 8.3936 -3.8985 -0.7252 34 1 7.7857 -4.3396 0.9026 35 1 10.6644 -4.2581 0.9529 36 1 10.7150 -3.2635 -0.5225 37 1 11.5884 -1.3532 0.7952 38 1 11.5379 -2.3477 2.2706 39 1 13.0620 -3.7162 0.3259 40 1 16.3432 -4.2605 0.0723 41 1 9.4603 -1.2847 -0.7668 42 1 9.3976 -0.5004 0.8412 43 1 5.2214 -2.1402 -0.1207 44 1 2.7654 -2.1412 -0.1196 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754926421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:05 Heat of formation + Delta-G solvation = 75.422220 kcal Electronic energy + Delta-G solvation = -24114.183797 eV Core-core repulsion = 20612.876249 eV Total energy + Delta-G solvation = -3501.307548 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.84917 -39.08820 -37.77859 -35.26441 -34.29802 -33.12220 -31.55266 -31.17431 -30.65733 -29.59661 -27.24158 -25.41308 -23.77664 -23.33275 -22.67794 -21.31551 -20.34795 -20.02192 -19.36773 -17.66988 -17.11223 -16.50587 -16.28019 -15.94953 -15.16391 -15.04296 -14.62756 -14.51156 -14.15220 -14.00676 -13.61989 -13.39839 -13.38635 -13.26133 -12.95617 -12.85150 -12.53423 -12.12804 -11.76753 -11.64470 -11.54536 -11.24583 -11.08571 -10.85544 -10.79275 -10.64399 -10.44720 -10.34870 -10.08569 -9.97095 -9.65473 -9.46757 -9.03618 -8.84567 -8.77758 -6.89658 -5.74344 -3.02785 0.14091 0.94357 2.18083 2.25338 2.74087 2.96985 3.45883 3.51047 3.52953 3.60596 3.74540 4.12855 4.28573 4.42436 4.49528 4.57944 4.67185 4.71220 4.88377 4.98516 5.05324 5.09103 5.11947 5.33290 5.43696 5.51946 5.55450 5.58011 5.63769 5.74618 5.78147 5.85623 5.89016 5.90063 5.96501 6.06081 6.11859 6.23373 6.36564 6.37110 6.40537 6.85038 6.89036 7.02625 7.30176 7.73003 7.95905 8.44905 9.55960 10.14105 10.48557 11.48672 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.036396 B = 0.002050 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.129866 B =13658.360432 C =14275.013418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.154 4.154 3 C 0.029 3.971 4 C -0.105 4.105 5 C -0.059 4.059 6 C -0.119 4.119 7 C 0.569 3.431 8 O -0.533 6.533 9 N -0.612 5.612 10 C 0.088 3.912 11 C -0.132 4.132 12 C -0.094 4.094 13 H 0.086 0.914 14 C -0.114 4.114 15 C 0.150 3.850 16 N -0.734 5.734 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.935 5.935 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.110 3.890 26 C -0.124 4.124 27 C -0.104 4.104 28 H 0.226 0.774 29 H 0.133 0.867 30 H 0.142 0.858 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.020 0.980 38 H 0.018 0.982 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.167 0.833 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.304 2.764 -1.226 31.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.154 4.154 3 C 0.028 3.972 4 C -0.123 4.123 5 C -0.078 4.078 6 C -0.122 4.122 7 C 0.358 3.642 8 O -0.411 6.411 9 N -0.345 5.345 10 C -0.034 4.034 11 C -0.170 4.170 12 C -0.114 4.114 13 H 0.104 0.896 14 C -0.153 4.153 15 C 0.023 3.977 16 N -0.378 5.378 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.011 4.011 26 C -0.141 4.141 27 C -0.122 4.122 28 H 0.242 0.758 29 H 0.151 0.849 30 H 0.160 0.840 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.038 0.962 38 H 0.036 0.964 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.184 0.816 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -30.878 3.532 -1.208 31.103 hybrid contribution 0.631 0.147 0.148 0.664 sum -30.248 3.678 -1.059 30.489 Atomic orbital electron populations 1.24950 0.95802 0.99064 0.98655 1.20043 0.92042 1.01574 1.01783 1.16219 0.86687 0.94025 1.00238 1.21173 0.93727 0.97304 1.00090 1.21220 0.93402 0.98031 0.95155 1.20043 0.92909 0.94485 1.04724 1.17903 0.86744 0.82556 0.76957 1.90812 1.69786 1.30524 1.49946 1.48398 1.08628 1.05263 1.72203 1.22577 0.96928 0.82578 1.01341 1.22814 0.94411 0.97252 1.02497 1.22357 0.95313 0.93449 1.00273 0.89573 1.21684 0.92059 1.00050 1.01471 1.20689 0.85394 0.95098 0.96541 1.42356 0.99834 1.32165 1.63450 1.19251 0.84868 1.06840 1.26049 0.91181 1.24737 0.97554 0.97990 1.00791 1.69654 1.23128 1.22917 1.42648 0.86184 0.83221 0.78840 0.77947 1.21738 1.21763 1.20741 1.22460 0.78819 0.98330 1.01516 1.22744 0.94592 0.99697 0.97073 1.21190 0.93891 0.97174 0.99951 0.75765 0.84890 0.84031 0.90272 0.90376 0.89938 0.89631 0.91223 0.91529 0.96239 0.96443 0.78337 0.93557 0.90654 0.89849 0.81592 0.84977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 19.25 29.55 0.57 -0.46 16 2 C -0.15 -1.27 13.23 -38.84 -0.51 -1.79 16 3 C 0.03 0.25 5.73 -106.87 -0.61 -0.36 16 4 C -0.10 -0.90 9.73 -39.26 -0.38 -1.28 16 5 C -0.06 -0.59 9.57 -39.25 -0.38 -0.97 16 6 C -0.12 -1.27 5.88 -104.91 -0.62 -1.89 16 7 C 0.57 7.66 7.80 -12.40 -0.10 7.56 16 8 O -0.53 -9.16 16.66 5.30 0.09 -9.08 16 9 N -0.61 -7.17 3.33 -176.30 -0.59 -7.76 16 10 C 0.09 0.69 4.86 -3.07 -0.01 0.68 16 11 C -0.13 -1.09 6.42 -24.90 -0.16 -1.25 16 12 C -0.09 -1.08 3.07 -88.47 -0.27 -1.36 16 13 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 14 C -0.11 -1.69 4.84 -26.73 -0.13 -1.82 16 15 C 0.15 2.98 6.11 -4.04 -0.02 2.96 16 16 N -0.73 -18.78 5.60 -59.91 -0.34 -19.12 16 17 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 18 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 19 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 20 N -0.93 -28.52 13.06 55.49 0.72 -27.79 16 21 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 C 0.11 1.44 5.55 -2.53 -0.01 1.42 16 26 C -0.12 -1.01 8.57 -39.25 -0.34 -1.35 16 27 C -0.10 -0.80 9.73 -39.26 -0.38 -1.19 16 28 H 0.23 0.49 7.80 -54.09 -0.42 0.07 16 29 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.14 1.41 7.66 -52.48 -0.40 1.01 16 31 H 0.08 0.50 6.67 -51.93 -0.35 0.16 16 32 H 0.08 0.49 6.79 -51.93 -0.35 0.14 16 33 H 0.08 0.67 8.04 -51.93 -0.42 0.26 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 37 H 0.02 0.40 7.46 -51.93 -0.39 0.01 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.38 10.20 7.67 -40.82 -0.31 9.89 16 40 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.08 1.04 8.00 -51.93 -0.42 0.62 16 42 H 0.08 1.23 8.02 -51.93 -0.42 0.81 16 43 H 0.17 1.03 2.74 -58.44 -0.16 0.87 16 44 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 369.13 15.07 5.56 5.56 Total: -1.00 -34.85 369.13 -9.31 -44.17 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -6.14 Total: 4.89 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -3.61 Total: -8.60 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.20 Total: -54.67 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.85 -9.31 -44.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754926421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.591 kcal (2) G-P(sol) polarization free energy of solvation -34.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds