Wall clock time and date at job start Tue Mar 31 2020 09:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99766 * 2 1 4 4 H 1.48502 * 109.46709 * 90.00042 * 3 2 1 5 5 H 1.48504 * 109.47047 * 330.00507 * 3 2 1 6 6 H 1.48490 * 109.47134 * 210.00041 * 3 2 1 7 7 C 1.37873 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00471 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99791 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47229 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47661 * 180.02562 * 10 9 7 12 12 N 1.46493 * 109.47483 * 179.97438 * 11 10 9 13 13 C 1.34783 * 120.00041 * 179.97438 * 12 11 10 14 14 O 1.21580 * 119.99868 * 355.11305 * 13 12 11 15 15 N 1.34777 * 120.00035 * 175.10994 * 13 12 11 16 16 C 1.47205 * 119.02795 * 5.80194 * 15 13 12 17 17 C 1.55115 * 115.95972 * 137.02451 * 16 15 13 18 18 C 1.49600 * 113.45599 * 316.01130 * 17 16 15 19 19 S 1.83008 * 110.34534 * 89.18543 * 18 17 16 20 20 C 1.74760 * 104.45351 * 285.65070 * 19 18 17 21 21 C 1.42844 * 119.02900 * 185.53288 * 15 13 12 22 22 H 1.08995 * 109.73372 * 156.11565 * 21 15 13 23 23 C 1.53000 * 109.73461 * 35.42674 * 21 15 13 24 24 C 1.53000 * 117.49960 * 248.75043 * 23 21 15 25 25 C 1.52996 * 117.49974 * 180.09160 * 23 21 15 26 26 H 0.96996 * 120.00261 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47460 * 300.00045 * 9 7 2 28 28 H 1.09009 * 109.46839 * 60.00010 * 9 7 2 29 29 H 1.09004 * 109.47530 * 300.00295 * 10 9 7 30 30 H 1.09000 * 109.47147 * 60.00155 * 10 9 7 31 31 H 1.09004 * 109.46709 * 300.00576 * 11 10 9 32 32 H 1.09000 * 109.46895 * 59.99778 * 11 10 9 33 33 H 0.97000 * 120.00023 * 0.02562 * 12 11 10 34 34 H 1.09003 * 108.18255 * 258.70872 * 16 15 13 35 35 H 1.08998 * 108.18491 * 15.53981 * 16 15 13 36 36 H 1.09002 * 108.68697 * 77.03663 * 17 16 15 37 37 H 1.09001 * 108.68592 * 194.97966 * 17 16 15 38 38 H 1.09003 * 109.32608 * 209.45910 * 18 17 16 39 39 H 1.09006 * 109.32217 * 329.09110 * 18 17 16 40 40 H 1.09001 * 108.86072 * 181.86412 * 20 19 18 41 41 H 1.08995 * 108.86144 * 300.27613 * 20 19 18 42 42 H 1.09003 * 115.55170 * 34.41706 * 23 21 15 43 43 H 1.08998 * 117.49808 * 359.97438 * 24 23 21 44 44 H 1.09000 * 117.50392 * 145.01989 * 24 23 21 45 45 H 1.09001 * 117.49869 * 214.98307 * 25 23 21 46 46 H 1.09001 * 117.49827 * 359.97082 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 1.4465 2.6527 -0.6999 6 1 3.5466 1.4403 -0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 6 5.5516 -2.6364 -0.0009 12 7 6.0400 -4.0176 -0.0002 13 6 7.3651 -4.2639 -0.0006 14 8 8.1544 -3.3436 -0.0912 15 7 7.8152 -5.5303 0.0996 16 6 6.8448 -6.6370 0.0784 17 6 7.2357 -7.8664 -0.7830 18 6 7.8004 -7.5017 -2.1195 19 16 9.6152 -7.2940 -2.0082 20 6 9.8298 -5.7643 -1.1908 21 6 9.2203 -5.7593 0.2174 22 1 9.3973 -6.7213 0.6982 23 6 9.8582 -4.6419 1.0452 24 6 10.7907 -3.6696 0.3200 25 6 11.3683 -4.7115 1.2811 26 1 -0.4850 0.8400 0.0004 27 1 3.8746 -0.6799 -0.8911 28 1 3.8752 -0.6803 0.8889 29 1 3.6587 -3.1501 0.8892 30 1 3.6580 -3.1504 -0.8907 31 1 5.9150 -2.1226 -0.8909 32 1 5.9149 -2.1225 0.8890 33 1 5.4097 -4.7549 -0.0002 34 1 6.6916 -6.9747 1.1034 35 1 5.8966 -6.2509 -0.2955 36 1 7.9764 -8.4526 -0.2391 37 1 6.3495 -8.4826 -0.9345 38 1 7.5708 -8.2908 -2.8355 39 1 7.3528 -6.5669 -2.4572 40 1 10.8962 -5.5518 -1.1152 41 1 9.3571 -4.9797 -1.7816 42 1 9.2410 -4.2418 1.8497 43 1 10.9500 -3.8263 -0.7469 44 1 10.7873 -2.6300 0.6475 45 1 11.7446 -4.3570 2.2407 46 1 11.9072 -5.5536 0.8470 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892794607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:53:54 Heat of formation + Delta-G solvation = 3.525638 kcal Electronic energy + Delta-G solvation = -24542.007015 eV Core-core repulsion = 21173.025749 eV Total energy + Delta-G solvation = -3368.981267 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.161 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.95462 -38.01530 -36.48518 -35.47087 -33.34852 -33.23719 -31.66226 -30.43816 -27.27760 -26.98928 -25.14738 -22.95864 -22.44677 -22.03603 -20.95736 -20.57211 -19.09560 -18.09474 -16.96344 -16.85839 -16.48277 -16.19510 -15.58931 -15.07563 -14.95379 -14.70356 -14.36255 -14.28911 -13.90528 -13.78621 -13.56836 -12.89449 -12.70279 -12.63988 -12.26193 -12.01973 -11.98206 -11.85786 -11.61430 -11.45988 -11.14968 -11.05114 -10.91901 -10.67112 -10.37400 -10.11031 -10.03180 -9.92887 -9.74781 -9.39382 -9.25469 -9.06158 -8.67381 -8.57772 -7.92953 -6.08723 -4.07577 1.45551 2.31313 2.53995 3.17662 3.29479 3.37202 3.41500 3.69623 3.90370 4.14734 4.42331 4.45057 4.57368 4.61266 4.64495 4.80143 4.92943 5.00520 5.07044 5.11665 5.15922 5.25458 5.33812 5.40297 5.44911 5.50257 5.54834 5.61906 5.64965 5.70464 5.93352 5.99740 6.07565 6.14774 6.30781 6.42817 6.46678 6.66290 6.78880 6.85227 7.20067 7.33641 7.73013 7.93636 8.47479 8.63295 8.94845 9.53573 11.04522 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.019331 B = 0.002986 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.086845 B = 9374.156065 C =10297.488881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.112 4.112 11 C 0.133 3.867 12 N -0.743 5.743 13 C 0.697 3.303 14 O -0.569 6.569 15 N -0.624 5.624 16 C 0.104 3.896 17 C -0.131 4.131 18 C -0.080 4.080 19 S -0.236 6.236 20 C -0.134 4.134 21 C 0.205 3.795 22 H 0.095 0.905 23 C -0.130 4.130 24 C -0.146 4.146 25 C -0.194 4.194 26 H 0.264 0.736 27 H 0.019 0.981 28 H 0.014 0.986 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.393 0.607 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.116 0.884 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.454 -17.987 -0.302 27.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.048 4.048 10 C -0.151 4.151 11 C 0.009 3.991 12 N -0.400 5.400 13 C 0.399 3.601 14 O -0.445 6.445 15 N -0.362 5.362 16 C -0.019 4.019 17 C -0.171 4.171 18 C -0.228 4.228 19 S -0.007 6.007 20 C -0.284 4.284 21 C 0.097 3.903 22 H 0.113 0.887 23 C -0.151 4.151 24 C -0.183 4.183 25 C -0.232 4.232 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.032 0.968 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.229 0.771 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.125 0.875 39 H 0.102 0.898 40 H 0.134 0.866 41 H 0.108 0.892 42 H 0.122 0.878 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 21.637 -17.832 -0.746 28.048 hybrid contribution -1.057 1.496 0.441 1.884 sum 20.580 -16.335 -0.305 26.277 Atomic orbital electron populations 1.69910 1.06321 1.26987 1.50982 1.25026 0.94744 0.99240 0.94441 0.86778 0.80417 0.83526 0.78604 1.20234 1.21343 1.18888 1.21091 0.89302 0.94493 1.51142 0.91039 1.19493 0.97246 0.91412 0.96658 1.21699 0.90739 1.01036 1.01579 1.21500 0.95671 0.80155 1.01741 1.45643 1.04960 1.10062 1.79317 1.16007 0.83108 0.82804 0.78198 1.90960 1.54430 1.42711 1.56382 1.46541 1.06347 1.04737 1.78538 1.21973 0.91564 0.87858 1.00516 1.21910 1.02849 0.97542 0.94837 1.22951 0.93775 1.05601 1.00435 1.85769 1.09727 1.28478 1.76748 1.23554 1.06143 0.98764 0.99984 1.19976 0.79229 0.98411 0.92658 0.88667 1.22166 0.91616 0.99400 1.01877 1.22849 1.01994 0.95881 0.97601 1.23179 0.95831 1.02449 1.01714 0.92675 0.96309 0.96756 0.92232 0.92239 0.91980 0.92079 0.77078 0.91222 0.90525 0.90062 0.89189 0.87501 0.89818 0.86627 0.89182 0.87766 0.88920 0.89102 0.88960 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -14.60 9.66 -34.44 -0.33 -14.93 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.23 4.04 -27.88 -0.11 -0.35 16 10 C -0.11 -2.06 5.27 -26.74 -0.14 -2.20 16 11 C 0.13 2.16 5.68 -4.05 -0.02 2.14 16 12 N -0.74 -9.98 5.42 -65.23 -0.35 -10.33 16 13 C 0.70 9.64 7.38 -86.91 -0.64 9.00 16 14 O -0.57 -9.54 12.62 5.29 0.07 -9.47 16 15 N -0.62 -6.49 2.43 -172.27 -0.42 -6.90 16 16 C 0.10 0.78 5.85 -2.54 -0.01 0.76 16 17 C -0.13 -0.78 5.48 -27.29 -0.15 -0.93 16 18 C -0.08 -0.59 6.03 35.48 0.21 -0.38 16 19 S -0.24 -2.17 21.48 -107.50 -2.31 -4.48 16 20 C -0.13 -1.34 4.02 37.39 0.15 -1.19 16 21 C 0.21 2.03 2.27 -69.62 -0.16 1.87 16 22 H 0.10 0.84 7.92 -51.93 -0.41 0.43 16 23 C -0.13 -1.44 3.89 -90.62 -0.35 -1.79 16 24 C -0.15 -1.64 8.15 -26.70 -0.22 -1.86 16 25 C -0.19 -1.77 9.84 -26.70 -0.26 -2.03 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 28 H 0.01 0.33 7.57 -51.92 -0.39 -0.07 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.39 4.35 5.91 -40.82 -0.24 4.11 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.55 5.65 -51.93 -0.29 0.25 16 36 H 0.08 0.49 7.78 -51.93 -0.40 0.08 16 37 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.74 7.95 -51.93 -0.41 0.33 16 40 H 0.12 1.10 5.59 -49.21 -0.27 0.83 16 41 H 0.09 1.13 7.51 -49.21 -0.37 0.76 16 42 H 0.10 1.36 7.71 -51.93 -0.40 0.96 16 43 H 0.09 1.04 5.88 -51.93 -0.31 0.73 16 44 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.09 0.72 7.75 -51.93 -0.40 0.32 16 LS Contribution 361.16 15.07 5.44 5.44 Total: -1.00 -31.67 361.16 -11.28 -42.95 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -7.67 Total: 2.73 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -2.14 Total: -10.06 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.00 Total: -44.09 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.07 Total: -9.47 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Atomic # 16 Polarization: -2.17 SS G_CDS: -2.31 Total: -4.48 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.67 -11.28 -42.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892794607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.475 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds