Wall clock time and date at job start Tue Mar 31 2020 10:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 120.00108 * 2 1 4 4 C 1.53007 * 109.47228 * 124.99631 * 3 2 1 5 5 N 1.46895 * 109.46951 * 180.02562 * 4 3 2 6 6 C 1.46897 * 110.99699 * 174.52210 * 5 4 3 7 7 C 1.53001 * 110.01785 * 56.20537 * 6 5 4 8 8 N 1.46500 * 109.47303 * 54.91419 * 7 6 5 9 9 C 1.34771 * 120.00113 * 184.85126 * 8 7 6 10 10 O 1.21276 * 120.00229 * 359.97438 * 9 8 7 11 11 C 1.50705 * 119.99999 * 179.97438 * 9 8 7 12 12 S 1.80996 * 109.47075 * 179.97438 * 11 9 8 13 13 C 1.76203 * 99.99906 * 180.02562 * 12 11 9 14 14 H 1.07995 * 120.00233 * 359.97438 * 13 12 11 15 15 C 1.38800 * 119.99687 * 180.02562 * 13 12 11 16 16 N 1.31632 * 120.00587 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99776 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46667 * 59.99891 * 17 15 13 19 19 H 1.48501 * 109.46954 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47203 * 300.00133 * 17 15 13 21 21 C 1.54268 * 110.07400 * 177.62145 * 6 5 4 22 22 C 1.54890 * 104.19682 * 95.69815 * 21 6 5 23 23 C 1.54881 * 102.74773 * 37.94304 * 22 21 6 24 24 C 1.53874 * 110.03628 * 294.81022 * 6 5 4 25 25 H 1.08000 * 120.00289 * 0.02562 * 1 2 3 26 26 H 1.07999 * 119.99936 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.00289 * 179.97438 * 2 1 3 28 28 H 1.09009 * 109.46833 * 5.00396 * 3 2 1 29 29 H 1.08999 * 109.47485 * 244.99745 * 3 2 1 30 30 H 1.08998 * 109.47071 * 60.00038 * 4 3 2 31 31 H 1.08999 * 109.46981 * 300.00423 * 4 3 2 32 32 H 1.00900 * 111.00086 * 298.47628 * 5 4 3 33 33 H 1.09004 * 109.47050 * 174.91475 * 7 6 5 34 34 H 1.08999 * 109.46988 * 294.91129 * 7 6 5 35 35 H 0.97000 * 119.99792 * 4.84547 * 8 7 6 36 36 H 1.08998 * 109.47289 * 299.99903 * 11 9 8 37 37 H 1.08998 * 109.47034 * 60.00182 * 11 9 8 38 38 H 0.96991 * 120.00140 * 180.02562 * 16 15 13 39 39 H 1.09000 * 110.48733 * 214.37644 * 21 6 5 40 40 H 1.09004 * 110.48814 * 337.01588 * 21 6 5 41 41 H 1.09005 * 110.75078 * 279.62746 * 22 21 6 42 42 H 1.09002 * 110.75726 * 156.26008 * 22 21 6 43 43 H 1.08997 * 110.48883 * 203.38133 * 23 22 21 44 44 H 1.09001 * 110.48999 * 80.73783 * 23 22 21 45 45 H 1.08998 * 110.02872 * 359.95309 * 24 6 5 46 46 H 1.09000 * 110.03155 * 121.37759 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 7 3.7691 2.6055 1.1820 6 6 4.6174 2.7235 2.3754 7 6 5.5696 1.5290 2.4613 8 7 6.3340 1.4233 1.2160 9 6 7.1688 0.3828 1.0240 10 8 7.2877 -0.4657 1.8823 11 6 7.9547 0.2738 -0.2573 12 16 8.9767 -1.2194 -0.2130 13 6 9.7634 -1.0985 -1.7850 14 1 9.5415 -0.2669 -2.4373 15 6 10.6674 -2.0726 -2.1854 16 7 10.9375 -3.0865 -1.3905 17 14 11.5009 -1.9448 -3.8523 18 1 12.2800 -0.6825 -3.9206 19 1 12.4145 -3.1006 -4.0388 20 1 10.4712 -1.9495 -4.9223 21 6 5.4225 4.0385 2.3249 22 6 4.5782 5.0332 3.1596 23 6 4.0466 4.1464 4.3128 24 6 3.7426 2.7922 3.6394 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1317 0.0896 29 1 2.6214 1.4026 -0.9313 30 1 3.7400 0.5066 1.0922 31 1 2.4772 1.2356 2.1131 32 1 4.3142 2.7087 0.3392 33 1 6.2548 1.6699 3.2973 34 1 4.9942 0.6158 2.6131 35 1 6.2392 2.1021 0.5296 36 1 7.2674 0.2191 -1.1015 37 1 8.5953 1.1489 -0.3662 38 1 11.5695 -3.7670 -1.6702 39 1 6.4057 3.9014 2.7750 40 1 5.5180 4.3881 1.2969 41 1 3.7544 5.4320 2.5676 42 1 5.2019 5.8386 3.5476 43 1 3.1378 4.5747 4.7356 44 1 4.8075 4.0267 5.0840 45 1 2.6885 2.7388 3.3672 46 1 3.9963 1.9744 4.3140 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753661103.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:30 Heat of formation + Delta-G solvation = -34.706878 kcal Electronic energy + Delta-G solvation = -23767.533351 eV Core-core repulsion = 20396.894198 eV Total energy + Delta-G solvation = -3370.639153 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.25178 -38.58393 -36.19040 -34.54552 -33.25409 -32.44474 -30.30801 -29.18065 -28.90607 -27.14058 -25.52437 -24.44833 -22.75160 -21.07659 -20.24494 -19.99172 -19.18485 -17.90709 -16.76530 -16.36959 -16.02671 -15.79300 -15.27316 -15.02429 -14.82657 -14.80245 -14.26648 -14.02577 -13.89235 -13.60138 -13.19173 -13.09550 -12.75519 -12.61769 -12.16497 -11.93030 -11.70504 -11.44743 -11.32070 -11.25273 -11.20976 -11.17505 -11.06362 -11.05112 -10.83710 -10.78510 -10.75736 -9.84638 -9.54376 -9.44722 -9.08181 -8.94767 -8.67283 -8.26410 -6.52210 -6.23152 -3.94152 2.07061 2.99232 3.05894 3.22304 3.26180 3.29334 3.63903 3.88518 4.18896 4.24890 4.33045 4.56779 4.80553 4.85751 4.93310 4.99748 5.09151 5.11913 5.14596 5.18114 5.23197 5.36373 5.44525 5.46529 5.55160 5.56774 5.63860 5.68191 5.71601 5.74235 5.79336 5.81115 5.84975 5.86824 5.91141 5.98903 6.09988 6.14523 6.43959 6.52522 6.56015 6.80844 7.10442 7.57420 7.62749 8.33282 8.56715 9.21977 10.84226 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.013472 B = 0.003045 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.892185 B = 9192.579238 C =10424.972462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.151 4.151 3 C -0.090 4.090 4 C 0.055 3.945 5 N -0.671 5.671 6 C 0.103 3.897 7 C 0.095 3.905 8 N -0.738 5.738 9 C 0.532 3.468 10 O -0.516 6.516 11 C -0.153 4.153 12 S -0.059 6.059 13 C -0.537 4.537 14 H 0.072 0.928 15 C 0.074 3.926 16 N -0.868 5.868 17 Si 0.919 3.081 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.274 1.274 21 C -0.115 4.115 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.110 4.110 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.338 0.662 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.393 0.607 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.428 15.514 6.695 25.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.169 4.169 3 C -0.127 4.127 4 C -0.074 4.074 5 N -0.302 5.302 6 C 0.011 3.989 7 C -0.031 4.031 8 N -0.393 5.393 9 C 0.318 3.682 10 O -0.390 6.390 11 C -0.304 4.304 12 S 0.168 5.832 13 C -0.685 4.685 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.503 5.503 17 Si 0.745 3.255 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.199 1.199 21 C -0.153 4.153 22 C -0.154 4.154 23 C -0.160 4.160 24 C -0.148 4.148 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.127 0.873 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.157 0.843 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.227 0.773 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.647 14.267 8.445 24.952 hybrid contribution 1.095 0.603 -2.658 2.938 sum -17.552 14.870 5.787 23.721 Atomic orbital electron populations 1.23833 0.95917 1.01712 1.01813 1.22965 0.96084 0.98622 0.99251 1.20694 0.98270 0.95378 0.98397 1.21975 0.95965 0.90464 0.98976 1.60799 1.30547 1.34773 1.04106 1.21872 0.91313 0.93924 0.91796 1.22094 0.94376 0.99047 0.87541 1.45972 1.45956 1.27329 1.20045 1.20313 0.78777 0.80524 0.88599 1.90705 1.64013 1.39544 1.44726 1.23529 1.02452 1.07528 0.96893 1.85402 1.49859 1.23083 1.24905 1.22827 1.29738 1.12845 1.03104 0.90984 1.24991 0.95900 0.94463 0.98175 1.70004 1.33142 1.10943 1.36207 0.86226 0.79092 0.77860 0.82338 1.19918 1.20788 1.19920 1.22470 0.98218 0.93617 1.00947 1.22407 0.99298 0.97164 0.96569 1.22320 1.00808 0.95128 0.97706 1.22192 1.00170 0.97881 0.94579 0.88677 0.88604 0.87309 0.90855 0.91079 0.94102 0.90708 0.84327 0.91421 0.91286 0.77251 0.89345 0.89261 0.92103 0.90807 0.91117 0.91056 0.91843 0.91673 0.91708 0.90341 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.61 14.32 29.01 0.42 -1.19 16 2 C -0.15 -1.37 9.52 -36.03 -0.34 -1.72 16 3 C -0.09 -0.77 5.96 -27.88 -0.17 -0.94 16 4 C 0.06 0.51 4.78 -3.82 -0.02 0.49 16 5 N -0.67 -5.62 5.92 -98.83 -0.59 -6.21 16 6 C 0.10 0.89 0.55 -130.48 -0.07 0.82 16 7 C 0.10 1.11 3.59 -4.04 -0.01 1.10 16 8 N -0.74 -9.53 5.18 -60.29 -0.31 -9.84 16 9 C 0.53 9.80 7.85 -10.99 -0.09 9.72 16 10 O -0.52 -11.72 15.86 5.56 0.09 -11.64 16 11 C -0.15 -3.07 6.16 36.01 0.22 -2.84 16 12 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 13 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 14 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 15 C 0.07 2.11 5.50 -17.43 -0.10 2.02 16 16 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 17 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 C -0.11 -0.91 5.64 -25.07 -0.14 -1.05 16 22 C -0.12 -0.84 6.91 -24.74 -0.17 -1.01 16 23 C -0.12 -0.88 6.83 -25.08 -0.17 -1.05 16 24 C -0.11 -0.89 5.54 -25.62 -0.14 -1.04 16 25 H 0.09 0.70 7.84 -52.49 -0.41 0.29 16 26 H 0.10 0.71 8.06 -52.49 -0.42 0.29 16 27 H 0.11 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.07 0.61 7.79 -51.92 -0.40 0.21 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.04 0.46 6.73 -51.93 -0.35 0.11 16 31 H 0.07 0.69 6.53 -51.93 -0.34 0.35 16 32 H 0.34 2.72 7.33 -39.29 -0.29 2.43 16 33 H 0.07 0.86 8.04 -51.93 -0.42 0.44 16 34 H 0.07 0.91 6.82 -51.93 -0.35 0.56 16 35 H 0.39 4.03 7.14 -40.82 -0.29 3.74 16 36 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 37 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 38 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.07 0.64 7.78 -51.93 -0.40 0.24 16 40 H 0.07 0.53 7.87 -51.93 -0.41 0.12 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.65 6.79 -51.93 -0.35 0.30 16 46 H 0.07 0.56 7.67 -51.93 -0.40 0.16 16 LS Contribution 381.83 15.07 5.75 5.75 Total: -1.00 -33.01 381.83 -9.82 -42.83 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -7.77 Total: 3.72 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -0.49 Total: -11.70 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: -0.16 Total: -41.50 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.01 -9.82 -42.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753661103.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.121 kcal (2) G-P(sol) polarization free energy of solvation -33.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds