Wall clock time and date at job start Tue Mar 31 2020 10:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50707 * 119.99640 * 2 1 4 4 C 1.30995 * 119.99942 * 180.02562 * 2 1 3 5 5 C 1.50700 * 120.00308 * 0.02562 * 4 2 1 6 6 N 1.46890 * 109.47495 * 124.99908 * 5 4 2 7 7 C 1.46897 * 111.00331 * 179.97438 * 6 5 4 8 8 H 1.09007 * 110.64052 * 323.31361 * 7 6 5 9 9 C 1.55153 * 110.72133 * 86.45110 * 7 6 5 10 10 C 1.54912 * 101.58230 * 154.04540 * 9 7 6 11 11 N 1.47421 * 104.83107 * 322.99299 * 10 9 7 12 12 C 1.34775 * 125.64649 * 204.09463 * 11 10 9 13 13 O 1.21284 * 120.00295 * 180.02562 * 12 11 10 14 14 C 1.50708 * 119.99957 * 0.02562 * 12 11 10 15 15 S 1.80998 * 109.47052 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00013 * 180.02562 * 15 14 12 17 17 H 1.07991 * 119.99794 * 0.02562 * 16 15 14 18 18 C 1.38798 * 119.99771 * 180.02562 * 16 15 14 19 19 N 1.31633 * 120.00311 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99653 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47055 * 180.02562 * 20 18 16 22 22 H 1.48508 * 109.47016 * 299.99635 * 20 18 16 23 23 H 1.48495 * 109.47483 * 59.99992 * 20 18 16 24 24 C 1.47014 * 108.70511 * 24.35609 * 11 10 9 25 25 H 1.09005 * 109.88315 * 239.29631 * 24 11 10 26 26 C 1.52998 * 109.88541 * 118.12953 * 24 11 10 27 27 H 1.09006 * 109.47027 * 239.99912 * 1 2 3 28 28 H 1.08996 * 109.47445 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47756 * 120.00288 * 1 2 3 30 30 H 1.09004 * 109.46464 * 269.99963 * 3 2 1 31 31 H 1.08994 * 109.47140 * 29.99836 * 3 2 1 32 32 H 1.08993 * 109.46664 * 150.00723 * 3 2 1 33 33 H 1.08004 * 119.99693 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.47234 * 4.99409 * 5 4 2 35 35 H 1.09008 * 109.46665 * 244.99865 * 5 4 2 36 36 H 1.00899 * 111.00395 * 56.04382 * 6 5 4 37 37 H 1.08994 * 111.00496 * 35.97135 * 9 7 6 38 38 H 1.09003 * 111.03753 * 272.13383 * 9 7 6 39 39 H 1.09002 * 110.36666 * 204.15234 * 10 9 7 40 40 H 1.09001 * 110.46061 * 81.87930 * 10 9 7 41 41 H 1.09005 * 109.46512 * 60.00633 * 14 12 11 42 42 H 1.08991 * 109.47135 * 300.00153 * 14 12 11 43 43 H 0.97001 * 119.99662 * 359.97438 * 19 18 16 44 44 H 1.09001 * 109.46601 * 61.45393 * 26 24 11 45 45 H 1.09000 * 109.47226 * 181.45101 * 26 24 11 46 46 H 1.08994 * 109.47222 * 301.45625 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4085 -2.4396 -0.0017 6 7 1.8520 -3.2601 -1.1365 7 6 1.1378 -4.5433 -1.1694 8 1 0.9660 -4.9135 -0.1586 9 6 -0.2026 -4.4059 -1.9386 10 6 -0.4257 -5.8560 -2.4360 11 7 0.9211 -6.3500 -2.7753 12 6 1.1980 -7.3416 -3.6451 13 8 2.3487 -7.6671 -3.8475 14 6 0.0778 -8.0460 -4.3663 15 16 0.7664 -9.3177 -5.4546 16 6 -0.7186 -9.9614 -6.1510 17 1 -1.6740 -9.5514 -5.8588 18 6 -0.6604 -10.9955 -7.0750 19 7 0.5041 -11.4956 -7.4308 20 14 -2.2348 -11.6774 -7.8138 21 1 -1.9031 -12.7678 -8.7657 22 1 -3.0987 -12.2122 -6.7308 23 1 -2.9542 -10.5947 -8.5318 24 6 1.9119 -5.5862 -2.0031 25 1 2.5997 -5.0799 -2.6804 26 6 2.6865 -6.5258 -1.0768 27 1 -0.3633 -0.5139 0.8900 28 1 -0.3634 1.0276 0.0005 29 1 -0.3634 -0.5139 -0.8899 30 1 2.4420 1.6198 -1.0277 31 1 1.6713 2.0648 0.5138 32 1 3.2128 1.1748 0.5137 33 1 3.2420 -1.1344 -0.0009 34 1 0.3403 -2.2424 -0.0914 35 1 1.6027 -2.9720 0.9295 36 1 2.8505 -3.4030 -1.1111 37 1 -0.1031 -3.7164 -2.7768 38 1 -1.0063 -4.0936 -1.2718 39 1 -1.0649 -5.8600 -3.3190 40 1 -0.8660 -6.4659 -1.6472 41 1 -0.4828 -7.3239 -4.9600 42 1 -0.5865 -8.5119 -3.6385 43 1 1.3216 -11.1412 -7.0474 44 1 3.2200 -7.2657 -1.6735 45 1 3.4009 -5.9492 -0.4892 46 1 1.9904 -7.0319 -0.4079 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755665708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:11 Heat of formation + Delta-G solvation = -31.474567 kcal Electronic energy + Delta-G solvation = -23314.238247 eV Core-core repulsion = 19943.739257 eV Total energy + Delta-G solvation = -3370.498989 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.161 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.20584 -38.12490 -37.05876 -34.65461 -32.51864 -31.84270 -31.03477 -29.08281 -28.28626 -27.81669 -25.24607 -24.83064 -23.43463 -22.72330 -20.84520 -19.11954 -18.30294 -18.14910 -16.92615 -16.44699 -15.93871 -15.42628 -15.09468 -14.95205 -14.54893 -14.28201 -14.06024 -13.85449 -13.82106 -13.64822 -13.32646 -12.93066 -12.81912 -12.59380 -12.38178 -12.35871 -12.27333 -12.11146 -11.99842 -11.80145 -11.67229 -11.53032 -11.22214 -11.09738 -10.91343 -10.81051 -10.16818 -9.56434 -9.44633 -9.24560 -9.00563 -8.71253 -8.55214 -8.21038 -6.66110 -6.61277 -3.98959 1.76632 2.78174 2.99631 3.33040 3.38474 3.45481 3.58570 3.91387 4.15761 4.26939 4.39386 4.45817 4.56980 4.82100 4.92048 4.96070 4.96616 5.06423 5.11479 5.15412 5.17181 5.23301 5.25857 5.32974 5.36950 5.38568 5.43203 5.46282 5.52685 5.56189 5.58965 5.65517 5.67191 5.79549 5.93309 5.96492 6.03076 6.17661 6.28589 6.45344 6.53314 6.70259 6.97554 7.63077 7.92679 8.49561 8.51012 9.28069 10.82616 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.029590 B = 0.002268 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.023357 B =12342.678634 C =12863.522699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C -0.118 4.118 4 C -0.164 4.164 5 C 0.085 3.915 6 N -0.673 5.673 7 C 0.077 3.923 8 H 0.061 0.939 9 C -0.121 4.121 10 C 0.099 3.901 11 N -0.619 5.619 12 C 0.549 3.451 13 O -0.515 6.515 14 C -0.124 4.124 15 S -0.116 6.116 16 C -0.607 4.607 17 H 0.065 0.935 18 C 0.035 3.965 19 N -0.884 5.884 20 Si 1.084 2.916 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.138 3.862 25 H 0.082 0.918 26 C -0.165 4.165 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.037 0.963 36 H 0.344 0.656 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.278 0.722 44 H 0.076 0.924 45 H 0.059 0.941 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.090 22.996 18.647 29.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.122 4.122 3 C -0.174 4.174 4 C -0.183 4.183 5 C -0.043 4.043 6 N -0.304 5.304 7 C -0.033 4.033 8 H 0.079 0.921 9 C -0.159 4.159 10 C -0.024 4.024 11 N -0.356 5.356 12 C 0.337 3.663 13 O -0.389 6.389 14 C -0.275 4.275 15 S 0.110 5.890 16 C -0.755 4.755 17 H 0.084 0.916 18 C -0.176 4.176 19 N -0.518 5.518 20 Si 0.910 3.090 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.211 1.211 24 C 0.034 3.966 25 H 0.100 0.900 26 C -0.223 4.223 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.126 0.874 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.162 0.838 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.077 0.923 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.345 21.601 16.775 27.352 hybrid contribution -0.528 1.115 2.121 2.454 sum -0.873 22.717 18.896 29.561 Atomic orbital electron populations 1.20873 0.92351 1.02304 1.02169 1.21603 0.95880 0.94977 0.99786 1.20857 0.99567 0.94830 1.02178 1.22470 0.99304 0.93292 1.03208 1.21103 1.00000 0.91792 0.91387 1.60558 1.10175 1.15371 1.44327 1.22629 0.94532 0.88379 0.97786 0.92114 1.22828 0.96258 0.96107 1.00752 1.22324 0.85169 0.94158 1.00784 1.48448 1.07400 1.36449 1.43307 1.19970 0.90383 0.78129 0.77819 1.90691 1.21734 1.63458 1.63033 1.23294 0.99691 1.02323 1.02200 1.84809 1.13895 1.39519 1.50755 1.23692 0.92545 1.26215 1.33036 0.91639 1.26058 1.04052 0.93390 0.94061 1.70800 0.98563 1.40957 1.41466 0.83331 0.72979 0.76392 0.76296 1.20276 1.21152 1.21124 1.21506 0.90936 0.91345 0.92822 0.89985 1.22179 1.00242 1.00469 0.99418 0.91701 0.92176 0.91043 0.91320 0.91960 0.91987 0.87395 0.89966 0.94495 0.83751 0.89428 0.90333 0.90105 0.91464 0.89055 0.89113 0.90994 0.90485 0.92253 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 8.53 36.01 0.31 -0.40 16 2 C -0.12 -0.83 6.05 -101.06 -0.61 -1.44 16 3 C -0.12 -0.66 9.97 36.01 0.36 -0.30 16 4 C -0.16 -1.18 9.37 -36.02 -0.34 -1.52 16 5 C 0.09 0.61 5.78 -4.98 -0.03 0.59 16 6 N -0.67 -5.67 6.30 -106.05 -0.67 -6.34 16 7 C 0.08 0.71 2.76 -65.88 -0.18 0.53 16 8 H 0.06 0.52 7.59 -51.93 -0.39 0.13 16 9 C -0.12 -1.08 6.71 -24.58 -0.17 -1.25 16 10 C 0.10 1.10 6.69 -2.53 -0.02 1.08 16 11 N -0.62 -9.12 3.06 -163.01 -0.50 -9.62 16 12 C 0.55 10.74 7.66 -10.98 -0.08 10.65 16 13 O -0.51 -11.91 14.91 5.55 0.08 -11.83 16 14 C -0.12 -2.60 5.16 36.01 0.19 -2.42 16 15 S -0.12 -3.18 19.60 -107.50 -2.11 -5.29 16 16 C -0.61 -17.67 9.50 30.94 0.29 -17.38 16 17 H 0.07 1.82 7.80 -52.49 -0.41 1.41 16 18 C 0.03 1.02 5.49 -17.43 -0.10 0.93 16 19 N -0.88 -27.73 13.67 55.49 0.76 -26.97 16 20 Si 1.08 25.10 29.92 -169.99 -5.09 20.01 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 C 0.14 1.71 2.99 -66.95 -0.20 1.51 16 25 H 0.08 1.12 7.98 -51.93 -0.41 0.71 16 26 C -0.16 -2.00 9.11 37.16 0.34 -1.66 16 27 H 0.06 0.34 7.85 -51.93 -0.41 -0.06 16 28 H 0.06 0.31 7.94 -51.93 -0.41 -0.11 16 29 H 0.07 0.46 7.66 -51.93 -0.40 0.06 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.30 8.05 -51.93 -0.42 -0.12 16 32 H 0.06 0.32 8.06 -51.93 -0.42 -0.10 16 33 H 0.11 0.73 8.04 -52.48 -0.42 0.31 16 34 H 0.08 0.58 5.79 -51.93 -0.30 0.28 16 35 H 0.04 0.26 8.09 -51.92 -0.42 -0.16 16 36 H 0.34 2.75 8.45 -39.29 -0.33 2.42 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.89 7.48 -51.93 -0.39 0.50 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.80 7.85 -51.91 -0.41 1.39 16 42 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 43 H 0.28 8.91 7.12 -40.82 -0.29 8.62 16 44 H 0.08 1.19 6.89 -51.93 -0.36 0.83 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 384.17 15.07 5.79 5.79 Total: -1.00 -34.45 384.17 -9.91 -44.37 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -7.94 Total: 0.95 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -0.24 Total: -11.08 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: -0.41 Total: -42.92 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.08 Total: -11.83 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.09 Total: 20.01 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -2.11 Total: -5.29 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.45 -9.91 -44.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755665708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.893 kcal (2) G-P(sol) polarization free energy of solvation -34.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds