Wall clock time and date at job start Tue Mar 31 2020 10:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50707 * 119.99640 * 2 1 4 4 C 1.30995 * 119.99942 * 180.02562 * 2 1 3 5 5 C 1.50700 * 120.00308 * 0.02562 * 4 2 1 6 6 N 1.46890 * 109.47495 * 124.99908 * 5 4 2 7 7 C 1.46897 * 111.00331 * 179.97438 * 6 5 4 8 8 H 1.09007 * 110.64052 * 323.31361 * 7 6 5 9 9 C 1.55153 * 110.72133 * 86.45110 * 7 6 5 10 10 C 1.54912 * 101.58230 * 154.04540 * 9 7 6 11 11 N 1.47421 * 104.83107 * 322.99299 * 10 9 7 12 12 C 1.34775 * 125.64649 * 204.09463 * 11 10 9 13 13 O 1.21284 * 120.00295 * 180.02562 * 12 11 10 14 14 C 1.50708 * 119.99957 * 0.02562 * 12 11 10 15 15 S 1.80998 * 109.47052 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00013 * 180.02562 * 15 14 12 17 17 H 1.07991 * 119.99794 * 0.02562 * 16 15 14 18 18 C 1.38798 * 119.99771 * 180.02562 * 16 15 14 19 19 N 1.31633 * 120.00311 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99653 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47055 * 180.02562 * 20 18 16 22 22 H 1.48508 * 109.47016 * 299.99635 * 20 18 16 23 23 H 1.48495 * 109.47483 * 59.99992 * 20 18 16 24 24 C 1.47014 * 108.70511 * 24.35609 * 11 10 9 25 25 H 1.09005 * 109.88315 * 239.29631 * 24 11 10 26 26 C 1.52998 * 109.88541 * 118.12953 * 24 11 10 27 27 H 1.09006 * 109.47027 * 239.99912 * 1 2 3 28 28 H 1.08996 * 109.47445 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47756 * 120.00288 * 1 2 3 30 30 H 1.09004 * 109.46464 * 269.99963 * 3 2 1 31 31 H 1.08994 * 109.47140 * 29.99836 * 3 2 1 32 32 H 1.08993 * 109.46664 * 150.00723 * 3 2 1 33 33 H 1.08004 * 119.99693 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.47234 * 4.99409 * 5 4 2 35 35 H 1.09008 * 109.46665 * 244.99865 * 5 4 2 36 36 H 1.00899 * 111.00395 * 56.04382 * 6 5 4 37 37 H 1.08994 * 111.00496 * 35.97135 * 9 7 6 38 38 H 1.09003 * 111.03753 * 272.13383 * 9 7 6 39 39 H 1.09002 * 110.36666 * 204.15234 * 10 9 7 40 40 H 1.09001 * 110.46061 * 81.87930 * 10 9 7 41 41 H 1.09005 * 109.46512 * 60.00633 * 14 12 11 42 42 H 1.08991 * 109.47135 * 300.00153 * 14 12 11 43 43 H 0.97001 * 119.99662 * 359.97438 * 19 18 16 44 44 H 1.09001 * 109.46601 * 61.45393 * 26 24 11 45 45 H 1.09000 * 109.47226 * 181.45101 * 26 24 11 46 46 H 1.08994 * 109.47222 * 301.45625 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4085 -2.4396 -0.0017 6 7 1.8520 -3.2601 -1.1365 7 6 1.1378 -4.5433 -1.1694 8 1 0.9660 -4.9135 -0.1586 9 6 -0.2026 -4.4059 -1.9386 10 6 -0.4257 -5.8560 -2.4360 11 7 0.9211 -6.3500 -2.7753 12 6 1.1980 -7.3416 -3.6451 13 8 2.3487 -7.6671 -3.8475 14 6 0.0778 -8.0460 -4.3663 15 16 0.7664 -9.3177 -5.4546 16 6 -0.7186 -9.9614 -6.1510 17 1 -1.6740 -9.5514 -5.8588 18 6 -0.6604 -10.9955 -7.0750 19 7 0.5041 -11.4956 -7.4308 20 14 -2.2348 -11.6774 -7.8138 21 1 -1.9031 -12.7678 -8.7657 22 1 -3.0987 -12.2122 -6.7308 23 1 -2.9542 -10.5947 -8.5318 24 6 1.9119 -5.5862 -2.0031 25 1 2.5997 -5.0799 -2.6804 26 6 2.6865 -6.5258 -1.0768 27 1 -0.3633 -0.5139 0.8900 28 1 -0.3634 1.0276 0.0005 29 1 -0.3634 -0.5139 -0.8899 30 1 2.4420 1.6198 -1.0277 31 1 1.6713 2.0648 0.5138 32 1 3.2128 1.1748 0.5137 33 1 3.2420 -1.1344 -0.0009 34 1 0.3403 -2.2424 -0.0914 35 1 1.6027 -2.9720 0.9295 36 1 2.8505 -3.4030 -1.1111 37 1 -0.1031 -3.7164 -2.7768 38 1 -1.0063 -4.0936 -1.2718 39 1 -1.0649 -5.8600 -3.3190 40 1 -0.8660 -6.4659 -1.6472 41 1 -0.4828 -7.3239 -4.9600 42 1 -0.5865 -8.5119 -3.6385 43 1 1.3216 -11.1412 -7.0474 44 1 3.2200 -7.2657 -1.6735 45 1 3.4009 -5.9492 -0.4892 46 1 1.9904 -7.0319 -0.4079 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755665708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:10 Heat of formation + Delta-G solvation = -53.880421 kcal Electronic energy + Delta-G solvation = -23315.209837 eV Core-core repulsion = 19943.739257 eV Total energy + Delta-G solvation = -3371.470580 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.38170 -39.19561 -37.83065 -35.47419 -34.75697 -32.91981 -32.04403 -30.32244 -28.96362 -28.44380 -27.08532 -26.05441 -24.16257 -23.73565 -21.68975 -20.71158 -19.92150 -18.84448 -18.19643 -17.62651 -16.92027 -16.58766 -16.34533 -15.84129 -15.75325 -15.57374 -15.30255 -14.89041 -14.64036 -14.56414 -14.45350 -14.30269 -14.00804 -13.89067 -13.79594 -13.24556 -13.20687 -13.01540 -12.83154 -12.73875 -12.68511 -12.54386 -12.27037 -12.02851 -11.95478 -11.69962 -11.60844 -11.54624 -11.10260 -10.99448 -10.34258 -9.83998 -9.75493 -9.29259 -8.93579 -8.89372 -6.29140 1.11515 1.26368 1.46521 1.51207 1.60594 1.80688 1.95749 2.33428 3.01458 3.06359 3.21128 3.32073 3.56999 3.75435 3.94508 3.99281 4.08556 4.12222 4.20304 4.26163 4.29617 4.36041 4.43861 4.48064 4.50271 4.61523 4.64774 4.73037 4.75279 4.87367 4.91349 4.96538 4.97136 5.03897 5.14527 5.16323 5.19675 5.22930 5.36482 5.62950 5.80117 5.99345 6.09316 6.13399 6.28190 6.37051 7.02285 7.05571 8.49695 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.029590 B = 0.002268 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.023357 B =12342.678634 C =12863.522699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.177 4.177 5 C 0.090 3.910 6 N -0.680 5.680 7 C 0.091 3.909 8 H 0.078 0.922 9 C -0.111 4.111 10 C 0.089 3.911 11 N -0.610 5.610 12 C 0.546 3.454 13 O -0.563 6.563 14 C -0.100 4.100 15 S -0.195 6.195 16 C -0.613 4.613 17 H 0.075 0.925 18 C -0.020 4.020 19 N -0.912 5.912 20 Si 1.137 2.863 21 H -0.280 1.280 22 H -0.262 1.262 23 H -0.263 1.263 24 C 0.133 3.867 25 H 0.065 0.935 26 C -0.158 4.158 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.345 0.655 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.260 0.740 44 H 0.037 0.963 45 H 0.086 0.914 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.684 24.843 20.458 32.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.128 4.128 3 C -0.176 4.176 4 C -0.195 4.195 5 C -0.038 4.038 6 N -0.312 5.312 7 C -0.019 4.019 8 H 0.095 0.905 9 C -0.149 4.149 10 C -0.033 4.033 11 N -0.345 5.345 12 C 0.333 3.667 13 O -0.441 6.441 14 C -0.251 4.251 15 S 0.032 5.968 16 C -0.761 4.761 17 H 0.094 0.906 18 C -0.223 4.223 19 N -0.547 5.547 20 Si 0.954 3.046 21 H -0.205 1.205 22 H -0.187 1.187 23 H -0.187 1.187 24 C 0.029 3.971 25 H 0.083 0.917 26 C -0.216 4.216 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.125 0.875 34 H 0.106 0.894 35 H 0.062 0.938 36 H 0.164 0.836 37 H 0.096 0.904 38 H 0.128 0.872 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.105 0.895 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.958 23.514 18.642 30.153 hybrid contribution 0.312 0.701 1.670 1.838 sum -2.646 24.216 20.312 31.717 Atomic orbital electron populations 1.20892 0.91670 1.02851 1.02284 1.21857 0.96593 0.95297 0.99041 1.20890 0.99791 0.94653 1.02264 1.22528 0.99415 0.93545 1.04043 1.21101 1.00183 0.91494 0.91058 1.60570 1.10357 1.14949 1.45302 1.22507 0.93939 0.87691 0.97755 0.90465 1.22814 0.96998 0.94215 1.00896 1.22697 0.83111 0.95830 1.01705 1.48415 1.09986 1.34589 1.41504 1.19696 0.89142 0.79169 0.78645 1.90675 1.23145 1.65363 1.64951 1.23156 1.00103 1.00502 1.01343 1.85059 1.15773 1.42783 1.53157 1.24020 0.92960 1.26198 1.32881 0.90642 1.27877 1.06466 0.93641 0.94294 1.70921 0.98887 1.42154 1.42781 0.82718 0.69232 0.76333 0.76275 1.20516 1.18691 1.18729 1.21696 0.90781 0.91864 0.92723 0.91719 1.22104 1.00615 0.99873 0.99052 0.90938 0.91523 0.91445 0.91442 0.91069 0.91752 0.87510 0.89450 0.93820 0.83568 0.90381 0.87208 0.89826 0.89418 0.87510 0.87388 0.92934 0.94389 0.89515 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 8.53 71.24 0.61 -0.53 16 2 C -0.13 -1.49 6.05 -16.48 -0.10 -1.59 16 3 C -0.12 -1.15 9.97 71.24 0.71 -0.44 16 4 C -0.18 -2.21 9.37 25.65 0.24 -1.97 16 5 C 0.09 1.04 5.78 85.56 0.49 1.54 16 6 N -0.68 -9.88 6.30 -489.44 -3.08 -12.97 16 7 C 0.09 1.42 2.76 46.11 0.13 1.54 16 8 H 0.08 1.01 7.59 -2.38 -0.02 0.99 16 9 C -0.11 -1.60 6.71 31.99 0.21 -1.39 16 10 C 0.09 1.71 6.69 86.86 0.58 2.29 16 11 N -0.61 -17.32 3.06 -788.04 -2.41 -19.73 16 12 C 0.55 21.54 7.66 87.66 0.67 22.21 16 13 O -0.56 -27.16 14.91 -3.04 -0.05 -27.20 16 14 C -0.10 -4.15 5.16 71.24 0.37 -3.79 16 15 S -0.19 -10.98 19.60 -56.49 -1.11 -12.09 16 16 C -0.61 -35.84 9.50 67.95 0.65 -35.19 16 17 H 0.08 4.12 7.80 -2.92 -0.02 4.10 16 18 C -0.02 -1.16 5.49 84.86 0.47 -0.69 16 19 N -0.91 -58.65 13.67 21.65 0.30 -58.35 16 20 Si 1.14 49.57 29.92 68.60 2.05 51.62 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 24 C 0.13 3.14 2.99 45.35 0.14 3.28 16 25 H 0.06 1.77 7.98 -2.38 -0.02 1.76 16 26 C -0.16 -3.73 9.11 71.98 0.66 -3.08 16 27 H 0.07 0.57 7.85 -2.38 -0.02 0.55 16 28 H 0.07 0.53 7.94 -2.39 -0.02 0.51 16 29 H 0.07 0.70 7.66 -2.39 -0.02 0.68 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.55 8.05 -2.39 -0.02 0.53 16 32 H 0.06 0.58 8.06 -2.39 -0.02 0.56 16 33 H 0.11 1.32 8.04 -2.91 -0.02 1.29 16 34 H 0.09 0.93 5.79 -2.39 -0.01 0.92 16 35 H 0.04 0.46 8.09 -2.38 -0.02 0.44 16 36 H 0.35 4.93 8.45 -89.69 -0.76 4.17 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 1.60 7.48 -2.39 -0.02 1.58 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.11 4.09 7.85 -2.39 -0.02 4.07 16 42 H 0.11 4.10 8.14 -2.40 -0.02 4.08 16 43 H 0.26 17.41 7.12 -92.71 -0.66 16.75 16 44 H 0.04 1.20 6.89 -2.39 -0.02 1.19 16 45 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -77.88 384.17 1.82 -76.07 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.30 Total: 20.47 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: 5.82 Total: -17.81 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -5.20 Total: -91.05 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.05 Total: -27.20 kcal Atomic # 14 Polarization: 49.57 SS G_CDS: 2.05 Total: 51.62 kcal Atomic # 16 Polarization: -10.98 SS G_CDS: -1.11 Total: -12.09 kcal Total: -77.88 1.82 -76.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755665708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.186 kcal (2) G-P(sol) polarization free energy of solvation -77.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds