Wall clock time and date at job start Tue Mar 31 2020 10:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47107 * 2 1 4 4 C 1.50700 * 109.47209 * 119.99799 * 2 1 3 5 5 H 1.08004 * 119.99711 * 122.34465 * 4 2 1 6 6 C 1.37871 * 120.00197 * 302.07940 * 4 2 1 7 7 N 1.31518 * 119.99879 * 353.79971 * 6 4 2 8 8 Si 1.86803 * 120.00147 * 173.80337 * 6 4 2 9 9 H 1.48497 * 109.47022 * 94.98684 * 8 6 4 10 10 H 1.48499 * 109.47169 * 214.98423 * 8 6 4 11 11 H 1.48498 * 109.47068 * 334.98674 * 8 6 4 12 12 C 1.53001 * 109.47151 * 239.99948 * 2 1 3 13 13 N 1.46499 * 109.47247 * 60.00063 * 12 2 1 14 14 C 1.34775 * 120.00084 * 180.02562 * 13 12 2 15 15 O 1.21580 * 119.99863 * 359.97438 * 14 13 12 16 16 N 1.34775 * 119.99558 * 179.97438 * 14 13 12 17 17 C 1.47023 * 125.65352 * 359.69530 * 16 14 13 18 18 C 1.54310 * 107.27489 * 180.96859 * 17 16 14 19 19 C 1.55148 * 102.86795 * 22.52187 * 18 17 16 20 20 H 1.08999 * 111.03541 * 82.39139 * 19 18 17 21 21 C 1.53000 * 111.00812 * 206.23184 * 19 18 17 22 22 O 1.43758 * 109.62997 * 292.55485 * 21 19 18 23 23 C 1.44576 * 104.92138 * 215.70614 * 22 21 19 24 24 C 1.54918 * 101.63787 * 36.27169 * 23 22 21 25 25 O 1.43368 * 109.63329 * 173.34504 * 21 19 18 26 26 C 1.47424 * 125.64351 * 179.97438 * 16 14 13 27 27 H 1.09008 * 109.46881 * 300.00126 * 1 2 3 28 28 H 1.09003 * 109.47156 * 59.99853 * 1 2 3 29 29 H 1.09001 * 109.47011 * 179.97438 * 1 2 3 30 30 H 1.09010 * 109.46902 * 174.12592 * 3 2 1 31 31 H 1.08993 * 109.47444 * 294.12663 * 3 2 1 32 32 H 1.08994 * 109.47375 * 54.13257 * 3 2 1 33 33 H 0.97005 * 119.99788 * 180.02562 * 7 6 4 34 34 H 1.09006 * 109.47267 * 180.02562 * 12 2 1 35 35 H 1.09002 * 109.46950 * 299.99701 * 12 2 1 36 36 H 0.97002 * 119.99682 * 0.02562 * 13 12 2 37 37 H 1.08997 * 109.87693 * 300.51356 * 17 16 14 38 38 H 1.09001 * 109.87960 * 61.67586 * 17 16 14 39 39 H 1.09005 * 110.92124 * 264.10493 * 18 17 16 40 40 H 1.09002 * 110.74478 * 140.85956 * 18 17 16 41 41 H 1.08996 * 109.63118 * 52.94786 * 21 19 18 42 42 H 1.08994 * 111.09235 * 278.16441 * 23 22 21 43 43 H 1.09004 * 110.94807 * 154.31714 * 23 22 21 44 44 H 1.08997 * 110.69768 * 205.95905 * 24 23 22 45 45 H 1.09001 * 110.69396 * 82.74882 * 24 23 22 46 46 H 1.08996 * 110.37319 * 274.67711 * 26 16 14 47 47 H 1.08999 * 110.37010 * 37.00255 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6841 -1.5659 1.1318 6 6 1.6643 -0.2649 2.4822 7 7 0.9766 0.8492 2.6078 8 14 2.1424 -1.2435 3.9999 9 1 3.4024 -0.6970 4.5645 10 1 1.0618 -1.1443 5.0136 11 1 2.3431 -2.6671 3.6280 12 6 2.0400 -0.7213 -1.2492 13 7 1.5517 -0.0307 -2.4454 14 6 1.8769 -0.4915 -3.6695 15 8 2.5758 -1.4800 -3.7810 16 7 1.4272 0.1436 -4.7699 17 6 0.5731 1.3403 -4.7798 18 6 0.2956 1.6930 -6.2562 19 6 0.5337 0.3439 -6.9844 20 1 -0.3483 -0.2939 -6.9247 21 6 0.9448 0.5715 -8.4404 22 8 -0.1593 1.1302 -9.1723 23 6 -0.0653 0.5457 -10.4913 24 6 0.4279 -0.8860 -10.1643 25 8 1.3067 -0.6794 -9.0400 26 6 1.7055 -0.2500 -6.1631 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1250 1.4442 0.1052 31 1 1.7651 1.9251 -0.9378 32 1 1.5934 1.9857 0.8327 33 1 0.7180 1.1628 3.4886 34 1 3.1300 -0.7217 -1.2490 35 1 1.6767 -1.7490 -1.2492 36 1 0.9943 0.7582 -2.3564 37 1 -0.3641 1.1310 -4.2642 38 1 1.0893 2.1681 -4.2936 39 1 0.9922 2.4519 -6.6127 40 1 -0.7343 2.0253 -6.3868 41 1 1.7929 1.2551 -8.4788 42 1 0.6612 1.0779 -11.1053 43 1 -1.0409 0.5210 -10.9770 44 1 0.9743 -1.3073 -11.0081 45 1 -0.4085 -1.5275 -9.8867 46 1 2.6538 0.1726 -6.4946 47 1 1.7206 -1.3361 -6.2546 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922837726.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:39 Heat of formation + Delta-G solvation = -116.786883 kcal Electronic energy + Delta-G solvation = -26766.040421 eV Core-core repulsion = 22949.089141 eV Total energy + Delta-G solvation = -3816.951280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.91741 -39.79960 -37.60976 -36.16139 -35.41106 -33.31330 -32.37255 -30.72059 -30.05283 -28.87511 -25.85326 -25.69301 -25.22535 -24.09997 -23.79240 -22.69302 -20.85891 -19.63823 -18.76203 -18.05521 -17.63042 -17.26257 -16.12287 -16.07094 -15.83172 -15.24583 -14.99965 -14.72566 -14.38581 -14.07510 -13.83241 -13.43245 -13.26993 -13.20329 -13.05050 -12.96562 -12.62146 -12.33391 -12.15675 -12.07981 -11.63004 -11.38333 -11.31291 -11.15855 -11.00843 -10.83915 -10.68077 -10.64728 -10.34446 -10.18297 -9.99827 -9.72167 -9.58748 -9.27468 -8.76736 -8.61878 -8.35569 -8.07564 -5.99776 -4.07895 2.82099 3.04041 3.30338 3.37777 3.43047 3.57022 3.68173 4.09896 4.28433 4.34171 4.42453 4.43450 4.54813 4.62403 4.70658 4.94163 5.00785 5.04441 5.15779 5.20796 5.27462 5.28804 5.49937 5.57127 5.64022 5.78699 5.88899 6.00916 6.19896 6.40938 6.41754 6.55367 6.62041 6.84256 6.86408 6.96879 7.06691 7.15080 7.38406 7.46722 7.59245 7.73598 8.03089 8.15187 8.40995 8.48671 8.91556 9.08787 9.57142 11.02365 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.039589 B = 0.002439 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.101060 B =11476.202414 C =11861.616557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.128 4.128 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.892 3.108 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.150 3.850 13 N -0.730 5.730 14 C 0.716 3.284 15 O -0.596 6.596 16 N -0.643 5.643 17 C 0.099 3.901 18 C -0.116 4.116 19 C -0.117 4.117 20 H 0.095 0.905 21 C 0.246 3.754 22 O -0.374 6.374 23 C 0.016 3.984 24 C 0.020 3.980 25 O -0.379 6.379 26 C 0.143 3.857 27 H 0.082 0.918 28 H 0.006 0.994 29 H 0.027 0.973 30 H 0.028 0.972 31 H 0.003 0.997 32 H 0.084 0.916 33 H 0.259 0.741 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.394 0.606 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.077 0.923 43 H 0.109 0.891 44 H 0.101 0.899 45 H 0.077 0.923 46 H 0.064 0.936 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.559 3.855 -25.065 25.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.185 4.185 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.720 3.280 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.027 3.973 13 N -0.385 5.385 14 C 0.418 3.582 15 O -0.474 6.474 16 N -0.384 5.384 17 C -0.025 4.025 18 C -0.154 4.154 19 C -0.136 4.136 20 H 0.113 0.887 21 C 0.151 3.849 22 O -0.295 6.295 23 C -0.060 4.060 24 C -0.057 4.057 25 O -0.300 6.300 26 C 0.020 3.980 27 H 0.101 0.899 28 H 0.025 0.975 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.022 0.978 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.229 0.771 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.127 0.873 44 H 0.119 0.881 45 H 0.095 0.905 46 H 0.082 0.918 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.071 3.199 -24.700 25.237 hybrid contribution -0.108 -0.052 0.725 0.735 sum -4.179 3.146 -23.976 24.540 Atomic orbital electron populations 1.21793 0.97856 0.99150 0.99851 1.18365 0.92707 0.92833 0.90584 1.21837 0.99399 0.98465 0.98834 1.20981 1.29788 1.13768 0.89850 0.92375 1.24877 0.95033 0.94780 0.98797 1.69847 1.38979 1.20453 1.23133 0.86573 0.78006 0.80687 0.82710 1.20845 1.21238 1.19832 1.21588 0.97923 0.95444 0.82353 1.45519 1.55561 1.33018 1.04368 1.15569 0.80334 0.82410 0.79866 1.90886 1.43324 1.27650 1.85589 1.47551 1.55045 1.30661 1.05108 1.21977 0.94916 0.88209 0.97349 1.22543 1.03225 0.96228 0.93378 1.22775 1.00113 0.98491 0.92242 0.88679 1.24028 0.88093 0.83010 0.89809 1.89206 1.49881 1.67249 1.23115 1.24374 1.03513 0.92193 0.85966 1.24223 0.94663 0.97303 0.89494 1.88951 1.56815 1.39361 1.44906 1.21739 0.95990 1.00981 0.79326 0.89948 0.97505 0.95372 0.95243 0.97778 0.89773 0.93089 0.92937 0.92920 0.77137 0.91437 0.91344 0.90287 0.89474 0.89324 0.90523 0.87265 0.88122 0.90487 0.91795 0.89936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.06 37.16 0.30 -2.66 16 2 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 3 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 4 C -0.51 -13.47 8.01 -34.44 -0.28 -13.74 16 5 H 0.06 1.57 7.75 -52.48 -0.41 1.16 16 6 C 0.07 1.77 5.13 -17.82 -0.09 1.68 16 7 N -0.89 -23.85 9.46 55.43 0.52 -23.32 16 8 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.15 3.35 4.50 -4.04 -0.02 3.33 16 13 N -0.73 -14.08 4.87 -65.22 -0.32 -14.40 16 14 C 0.72 13.98 8.49 -86.92 -0.74 13.24 16 15 O -0.60 -13.90 16.60 5.30 0.09 -13.82 16 16 N -0.64 -9.70 3.33 -176.24 -0.59 -10.28 16 17 C 0.10 1.12 6.14 -3.07 -0.02 1.10 16 18 C -0.12 -1.02 6.31 -24.91 -0.16 -1.18 16 19 C -0.12 -1.17 3.05 -88.46 -0.27 -1.44 16 20 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 21 C 0.25 2.21 3.46 37.16 0.13 2.34 16 22 O -0.37 -3.23 11.21 -59.05 -0.66 -3.89 16 23 C 0.02 0.09 7.95 38.17 0.30 0.39 16 24 C 0.02 0.12 8.07 38.17 0.31 0.43 16 25 O -0.38 -3.69 10.95 -59.05 -0.65 -4.34 16 26 C 0.14 1.86 6.13 -2.52 -0.02 1.85 16 27 H 0.08 2.07 6.15 -51.92 -0.32 1.75 16 28 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.03 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.00 0.07 6.71 -51.93 -0.35 -0.28 16 32 H 0.08 2.11 6.20 -51.93 -0.32 1.79 16 33 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 34 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.39 6.89 5.14 -40.82 -0.21 6.68 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.62 8.01 -51.93 -0.42 0.20 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 0.73 8.10 -51.93 -0.42 0.30 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.80 8.04 -51.93 -0.42 0.38 16 47 H 0.08 1.21 8.04 -51.93 -0.42 0.80 16 LS Contribution 368.19 15.07 5.55 5.55 Total: -1.00 -31.55 368.19 -9.24 -40.79 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -7.84 Total: 3.82 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -0.32 Total: 3.95 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: -0.38 Total: -48.01 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -1.22 Total: -22.05 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.55 -9.24 -40.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922837726.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.998 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds