Wall clock time and date at job start Tue Mar 31 2020 11:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50699 * 120.00210 * 2 1 4 4 O 1.42904 * 109.46769 * 135.00158 * 3 2 1 5 5 C 1.42902 * 113.99469 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.46888 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47273 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47187 * 180.02562 * 7 6 5 9 9 O 1.21282 * 120.00187 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99701 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99788 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47322 * 179.97438 * 11 10 8 13 13 H 1.08998 * 109.51511 * 304.90023 * 12 11 10 14 14 C 1.53298 * 109.55522 * 184.76832 * 12 11 10 15 15 N 1.47165 * 108.41378 * 187.77182 * 14 12 11 16 16 C 1.36938 * 120.99161 * 230.53685 * 15 14 12 17 17 H 1.08000 * 119.99955 * 26.16635 * 16 15 14 18 18 C 1.38809 * 119.99631 * 206.16521 * 16 15 14 19 19 N 1.31622 * 120.00669 * 16.92301 * 18 16 15 20 20 Si 1.86807 * 119.99546 * 196.92146 * 18 16 15 21 21 H 1.48496 * 109.47409 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47216 * 120.00540 * 20 18 16 23 23 H 1.48503 * 109.47230 * 240.00053 * 20 18 16 24 24 C 1.47152 * 118.02679 * 50.46872 * 15 14 12 25 25 C 1.53299 * 108.41953 * 309.53158 * 24 15 14 26 26 O 1.42963 * 109.21892 * 52.28078 * 25 24 15 27 27 H 1.08001 * 119.99782 * 359.97438 * 1 2 3 28 28 H 1.07991 * 120.00024 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.99782 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.46735 * 15.00793 * 3 2 1 31 31 H 1.08991 * 109.47373 * 255.00566 * 3 2 1 32 32 H 1.09001 * 109.46896 * 60.00533 * 5 4 3 33 33 H 1.08995 * 109.47538 * 300.00496 * 5 4 3 34 34 H 1.08998 * 109.47291 * 60.00300 * 6 5 4 35 35 H 1.09004 * 109.47690 * 300.00458 * 6 5 4 36 36 H 1.09001 * 109.46739 * 60.00458 * 7 6 5 37 37 H 1.08995 * 109.47311 * 300.00656 * 7 6 5 38 38 H 0.96991 * 120.00558 * 359.97438 * 10 8 7 39 39 H 1.09002 * 109.47409 * 59.99286 * 11 10 8 40 40 H 1.09007 * 109.46932 * 299.99652 * 11 10 8 41 41 H 1.08997 * 109.68150 * 307.47388 * 14 12 11 42 42 H 1.08997 * 109.68026 * 68.03201 * 14 12 11 43 43 H 0.96998 * 120.00031 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.68620 * 189.79013 * 24 15 14 45 45 H 1.08999 * 109.68213 * 69.27474 * 24 15 14 46 46 H 1.08992 * 109.51435 * 172.20376 * 25 24 15 47 47 H 1.08999 * 109.50681 * 292.35866 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1269 1.2411 0.9527 5 6 3.9086 2.4347 1.0320 6 6 5.0107 2.2539 2.0778 7 6 5.8474 3.5320 2.1632 8 6 6.9333 3.3537 3.1928 9 8 7.0289 2.3072 3.7983 10 7 7.7981 4.3572 3.4408 11 6 8.8541 4.1837 4.4413 12 6 9.6907 5.4618 4.5268 13 1 10.0698 5.7158 3.5370 14 6 10.8670 5.2419 5.4849 15 7 11.5432 6.5321 5.6946 16 6 12.8994 6.6498 5.5456 17 1 13.4317 5.9731 4.8937 18 6 13.5897 7.6391 6.2324 19 7 13.0292 8.2400 7.2605 20 14 15.3144 8.1174 5.6974 21 1 15.7134 7.2995 4.5239 22 1 15.3372 9.5557 5.3285 23 1 16.2634 7.8778 6.8141 24 6 10.7186 7.6923 6.0677 25 6 9.5494 7.7929 5.0813 26 8 8.8788 6.5320 5.0162 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9352 0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3856 2.1160 0.2661 31 1 2.4755 1.4868 -0.9926 32 1 3.2691 3.2694 1.3193 33 1 4.3588 2.6394 0.0608 34 1 5.6502 1.4191 1.7911 35 1 4.5601 2.0494 3.0490 36 1 5.2075 4.3665 2.4503 37 1 6.2979 3.7370 1.1922 38 1 7.7219 5.1940 2.9563 39 1 9.4940 3.3496 4.1533 40 1 8.4041 3.9779 5.4126 41 1 10.4984 4.8622 6.4378 42 1 11.5660 4.5275 5.0500 43 1 13.5118 8.9310 7.7406 44 1 11.3192 8.6006 6.0188 45 1 10.3350 7.5600 7.0793 46 1 8.8521 8.5590 5.4201 47 1 9.9281 8.0553 4.0935 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753655246.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:04 Heat of formation + Delta-G solvation = -93.999902 kcal Electronic energy + Delta-G solvation = -25143.754859 eV Core-core repulsion = 21327.791697 eV Total energy + Delta-G solvation = -3815.963162 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.80275 -38.61313 -38.35867 -35.03967 -34.68758 -34.29238 -33.32675 -31.58565 -30.71481 -28.22935 -27.26330 -25.99099 -25.00317 -23.21965 -22.35149 -21.63382 -20.51436 -20.23773 -19.56428 -17.46681 -16.94512 -16.85625 -16.65495 -16.13648 -15.86257 -15.58957 -15.30521 -14.98984 -14.49821 -14.28673 -14.07478 -13.76084 -13.61704 -13.27833 -13.13110 -12.85191 -12.79102 -12.65231 -12.30436 -12.09194 -11.57962 -11.51566 -11.31155 -11.17530 -11.15885 -10.89881 -10.73993 -10.43859 -10.28219 -10.23711 -10.02601 -9.89330 -9.73124 -9.66561 -9.10472 -8.97517 -8.58123 -6.79260 -5.87869 -3.31549 1.70898 2.66890 3.07034 3.31156 3.39278 3.41366 3.53861 4.20349 4.39974 4.48112 4.59148 4.64569 4.69073 4.89936 4.91010 5.02397 5.09373 5.10652 5.12076 5.20137 5.29872 5.36019 5.41934 5.46548 5.49526 5.77331 5.83410 5.86593 6.00846 6.02438 6.11473 6.12259 6.20035 6.26025 6.33401 6.45196 6.52560 6.72486 6.84485 7.06725 7.47951 7.55585 7.67722 7.81707 8.26192 8.29676 9.07785 9.70473 10.27183 11.20312 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.046179 B = 0.001735 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.196422 B =16133.596692 C =16301.319530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C 0.088 3.912 4 O -0.384 6.384 5 C 0.062 3.938 6 C -0.103 4.103 7 C -0.138 4.138 8 C 0.510 3.490 9 O -0.544 6.544 10 N -0.721 5.721 11 C 0.130 3.870 12 C 0.065 3.935 13 H 0.058 0.942 14 C 0.121 3.879 15 N -0.594 5.594 16 C -0.256 4.256 17 H 0.070 0.930 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.905 3.095 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.289 1.289 24 C 0.139 3.861 25 C 0.040 3.960 26 O -0.390 6.390 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.117 0.883 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.403 0.597 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.030 0.970 42 H 0.064 0.936 43 H 0.255 0.745 44 H 0.094 0.906 45 H 0.028 0.972 46 H 0.081 0.919 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.361 -8.010 -15.191 26.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.169 4.169 3 C 0.011 3.989 4 O -0.303 6.303 5 C -0.014 4.014 6 C -0.141 4.141 7 C -0.178 4.178 8 C 0.296 3.704 9 O -0.421 6.421 10 N -0.373 5.373 11 C 0.006 3.994 12 C 0.005 3.995 13 H 0.076 0.924 14 C -0.006 4.006 15 N -0.318 5.318 16 C -0.385 4.385 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.735 3.265 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.216 1.216 24 C 0.013 3.987 25 C -0.038 4.038 26 O -0.309 6.309 27 H 0.116 0.884 28 H 0.122 0.878 29 H 0.135 0.865 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.237 0.763 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.048 0.952 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.112 0.888 45 H 0.046 0.954 46 H 0.100 0.900 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -20.327 -8.816 -14.460 26.457 hybrid contribution 1.127 1.140 -0.599 1.711 sum -19.200 -7.676 -15.059 25.580 Atomic orbital electron populations 1.23850 0.95566 1.02314 1.00107 1.22768 0.95664 0.98295 1.00206 1.21536 0.88976 0.95859 0.92486 1.87927 1.44580 1.37357 1.60452 1.22536 0.92866 0.87125 0.98903 1.21208 0.95799 0.97352 0.99761 1.21536 0.96810 1.00085 0.99349 1.20534 0.82485 0.83642 0.83702 1.90717 1.73058 1.27360 1.51014 1.45979 1.32012 1.17341 1.41931 1.21412 0.88904 0.96652 0.92455 1.22803 0.92050 0.86638 0.97976 0.92388 1.21450 0.92696 0.90241 0.96228 1.44075 1.03526 1.02646 1.81535 1.19246 0.82482 1.16005 1.20765 0.91272 1.25047 0.98003 1.01011 0.95549 1.70044 1.37931 1.27935 1.18755 0.86186 0.84078 0.78192 0.78091 1.20200 1.21479 1.21595 1.21446 0.90135 0.93146 0.93950 1.23324 0.96301 0.84245 0.99941 1.87788 1.38501 1.17843 1.86807 0.88426 0.87754 0.86516 0.92791 0.92346 0.93172 0.93177 0.90231 0.90204 0.88663 0.88765 0.76297 0.90179 0.90696 0.95202 0.91764 0.93525 0.88765 0.95358 0.90042 0.94115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.02 14.31 29.01 0.42 -0.61 16 2 C -0.15 -1.06 9.89 -36.03 -0.36 -1.41 16 3 C 0.09 0.63 6.35 36.01 0.23 0.86 16 4 O -0.38 -3.80 10.33 -35.23 -0.36 -4.16 16 5 C 0.06 0.49 5.94 37.16 0.22 0.71 16 6 C -0.10 -0.98 4.87 -26.73 -0.13 -1.11 16 7 C -0.14 -1.15 5.70 -27.88 -0.16 -1.31 16 8 C 0.51 6.51 7.83 -10.98 -0.09 6.42 16 9 O -0.54 -9.18 15.98 5.56 0.09 -9.09 16 10 N -0.72 -8.99 5.50 -60.29 -0.33 -9.32 16 11 C 0.13 1.92 5.35 -4.04 -0.02 1.90 16 12 C 0.07 1.11 2.81 -26.58 -0.07 1.04 16 13 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 14 C 0.12 2.49 6.03 -3.52 -0.02 2.47 16 15 N -0.59 -14.67 3.05 -171.82 -0.52 -15.20 16 16 C -0.26 -6.88 9.65 -15.06 -0.15 -7.02 16 17 H 0.07 1.82 7.88 -52.49 -0.41 1.40 16 18 C 0.00 0.07 4.95 -17.43 -0.09 -0.01 16 19 N -0.90 -25.74 11.14 55.49 0.62 -25.12 16 20 Si 0.90 21.20 29.59 -169.99 -5.03 16.17 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 C 0.14 3.26 5.44 -3.53 -0.02 3.24 16 25 C 0.04 0.74 6.99 37.31 0.26 1.00 16 26 O -0.39 -7.11 10.33 -35.23 -0.36 -7.48 16 27 H 0.10 0.46 7.90 -52.49 -0.41 0.04 16 28 H 0.10 0.47 8.06 -52.49 -0.42 0.04 16 29 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.05 0.33 7.86 -51.93 -0.41 -0.08 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 35 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.40 4.20 8.47 -40.82 -0.35 3.85 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 1.26 7.96 -51.93 -0.41 0.84 16 43 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.09 2.42 6.14 -51.93 -0.32 2.10 16 45 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 47 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 387.89 15.07 5.85 5.85 Total: -1.00 -32.58 387.89 -8.25 -40.83 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -8.21 Total: 1.36 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 0.03 Total: 6.16 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.24 Total: -49.64 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.64 Total: -20.73 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.58 -8.25 -40.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753655246.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.172 kcal (2) G-P(sol) polarization free energy of solvation -32.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds