Wall clock time and date at job start Tue Mar 31 2020 11:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50698 * 120.00200 * 2 1 4 4 O 1.42902 * 109.47200 * 134.99762 * 3 2 1 5 5 C 1.42900 * 113.99910 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46821 * 179.97438 * 5 4 3 7 7 C 1.53007 * 109.46788 * 180.02562 * 6 5 4 8 8 C 1.50709 * 109.46905 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99722 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99691 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99827 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46865 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.51149 * 60.10357 * 12 11 10 14 14 C 1.53292 * 109.50864 * 180.25299 * 12 11 10 15 15 N 1.47149 * 108.38603 * 172.22952 * 14 12 11 16 16 C 1.36936 * 120.98855 * 129.44355 * 15 14 12 17 17 H 1.08002 * 120.00287 * 206.25427 * 16 15 14 18 18 C 1.38818 * 119.99849 * 26.25083 * 16 15 14 19 19 N 1.31617 * 119.99564 * 16.90513 * 18 16 15 20 20 Si 1.86794 * 120.00106 * 196.90439 * 18 16 15 21 21 H 1.48504 * 109.46915 * 60.00022 * 20 18 16 22 22 H 1.48500 * 109.47272 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47169 * 300.00273 * 20 18 16 24 24 C 1.47154 * 118.03330 * 309.46587 * 15 14 12 25 25 C 1.53294 * 108.38540 * 50.53385 * 24 15 14 26 26 O 1.42955 * 109.51543 * 300.00166 * 12 11 10 27 27 H 1.08005 * 120.00386 * 180.02562 * 1 2 3 28 28 H 1.07998 * 119.99861 * 0.02562 * 1 2 3 29 29 H 1.08007 * 120.00044 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47046 * 14.99636 * 3 2 1 31 31 H 1.09002 * 109.46945 * 254.99253 * 3 2 1 32 32 H 1.09002 * 109.47180 * 60.00141 * 5 4 3 33 33 H 1.08997 * 109.47584 * 300.00020 * 5 4 3 34 34 H 1.08998 * 109.47742 * 300.00153 * 6 5 4 35 35 H 1.09000 * 109.47281 * 60.00557 * 6 5 4 36 36 H 1.08997 * 109.47557 * 300.00342 * 7 6 5 37 37 H 1.09002 * 109.47241 * 60.00483 * 7 6 5 38 38 H 0.96999 * 120.00171 * 359.97438 * 10 8 7 39 39 H 1.09001 * 109.46693 * 299.99805 * 11 10 8 40 40 H 1.09002 * 109.46906 * 59.99790 * 11 10 8 41 41 H 1.09008 * 109.68494 * 291.94915 * 14 12 11 42 42 H 1.09001 * 109.68523 * 52.50527 * 14 12 11 43 43 H 0.97007 * 119.99752 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.68345 * 290.81060 * 24 15 14 45 45 H 1.09002 * 109.68499 * 170.25836 * 24 15 14 46 46 H 1.09000 * 109.51136 * 187.77500 * 25 24 15 47 47 H 1.09001 * 109.51001 * 67.62273 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2412 0.9527 5 6 3.9084 2.4348 1.0321 6 6 5.0104 2.2540 2.0779 7 6 5.8470 3.5322 2.1633 8 6 6.9329 3.3540 3.1930 9 8 7.0280 2.3078 3.7992 10 7 7.7977 4.3575 3.4410 11 6 8.8530 4.1844 4.4424 12 6 9.6897 5.4625 4.5276 13 1 9.0509 6.2972 4.8163 14 6 10.7981 5.2802 5.5707 15 7 11.6971 6.4430 5.5008 16 6 12.0364 7.1407 6.6292 17 1 12.3172 8.1811 6.5568 18 6 12.0193 6.5108 7.8661 19 7 12.0083 5.1965 7.9351 20 14 12.0119 7.5285 9.4324 21 1 10.8059 8.3947 9.4543 22 1 11.9926 6.6243 10.6102 23 1 13.2306 8.3757 9.4781 24 6 12.2204 6.8343 4.1823 25 6 11.0427 6.9410 3.2069 26 8 10.2812 5.7320 3.2544 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3855 2.1161 0.2659 31 1 2.4756 1.4866 -0.9926 32 1 3.2689 3.2696 1.3192 33 1 4.3588 2.6395 0.0608 34 1 4.5598 2.0496 3.0491 35 1 5.6500 1.4193 1.7912 36 1 6.2977 3.7372 1.1923 37 1 5.2072 4.3668 2.4503 38 1 7.7215 5.1943 2.9564 39 1 8.4023 3.9792 5.4134 40 1 9.4930 3.3501 4.1552 41 1 10.3585 5.2154 6.5661 42 1 11.3580 4.3699 5.3562 43 1 11.9960 4.7563 8.7994 44 1 12.9235 6.0805 3.8279 45 1 12.7227 7.7987 4.2581 46 1 11.4201 7.0940 2.1958 47 1 10.4095 7.7815 3.4911 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753655247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:07 Heat of formation + Delta-G solvation = -93.754621 kcal Electronic energy + Delta-G solvation = -25324.327930 eV Core-core repulsion = 21508.375404 eV Total energy + Delta-G solvation = -3815.952526 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.70136 -38.58141 -38.32390 -34.94728 -34.63333 -34.29972 -33.27230 -31.38864 -30.92825 -28.11538 -27.18917 -25.98132 -24.96430 -23.31442 -22.27629 -21.51966 -20.42313 -20.18836 -19.54750 -17.40162 -16.96863 -16.82558 -16.61373 -16.06746 -15.64946 -15.58644 -15.25687 -15.04349 -14.36896 -14.35044 -14.00620 -13.71618 -13.63198 -13.27029 -13.02770 -12.84607 -12.77992 -12.57921 -12.23976 -11.99050 -11.53838 -11.47743 -11.27006 -11.12370 -11.11532 -10.85280 -10.75902 -10.44355 -10.31389 -10.20310 -10.05807 -9.77001 -9.70118 -9.66134 -9.10498 -8.84230 -8.57312 -6.78741 -5.87061 -3.31013 1.73619 2.77266 3.15165 3.33443 3.39753 3.40462 3.60373 4.23124 4.41655 4.51674 4.66129 4.68770 4.73190 4.94323 4.94665 5.06929 5.14501 5.15925 5.17503 5.25067 5.33257 5.41523 5.44568 5.53815 5.61283 5.83411 5.90301 5.91300 6.01388 6.08045 6.10067 6.14074 6.22469 6.23263 6.35562 6.47845 6.66808 6.75322 6.88396 7.03943 7.45219 7.66967 7.68106 7.80974 8.30262 8.37653 9.07976 9.70982 10.27971 11.21010 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.026626 B = 0.001940 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.351042 B =14426.045284 C =15073.505096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C 0.088 3.912 4 O -0.384 6.384 5 C 0.063 3.937 6 C -0.103 4.103 7 C -0.137 4.137 8 C 0.509 3.491 9 O -0.543 6.543 10 N -0.721 5.721 11 C 0.132 3.868 12 C 0.055 3.945 13 H 0.055 0.945 14 C 0.152 3.848 15 N -0.594 5.594 16 C -0.259 4.259 17 H 0.068 0.932 18 C 0.004 3.996 19 N -0.901 5.901 20 Si 0.906 3.094 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.282 1.282 24 C 0.109 3.891 25 C 0.050 3.950 26 O -0.390 6.390 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.117 0.883 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.402 0.598 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.031 0.969 43 H 0.257 0.743 44 H 0.027 0.973 45 H 0.062 0.938 46 H 0.082 0.918 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.056 -2.516 -16.724 24.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.169 4.169 3 C 0.011 3.989 4 O -0.303 6.303 5 C -0.014 4.014 6 C -0.141 4.141 7 C -0.177 4.177 8 C 0.294 3.706 9 O -0.421 6.421 10 N -0.372 5.372 11 C 0.008 3.992 12 C -0.004 4.004 13 H 0.073 0.927 14 C 0.026 3.974 15 N -0.318 5.318 16 C -0.388 4.388 17 H 0.086 0.914 18 C -0.195 4.195 19 N -0.545 5.545 20 Si 0.735 3.265 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.208 1.208 24 C -0.018 4.018 25 C -0.028 4.028 26 O -0.310 6.310 27 H 0.122 0.878 28 H 0.116 0.884 29 H 0.135 0.865 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.236 0.764 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.114 0.886 42 H 0.050 0.950 43 H 0.067 0.933 44 H 0.044 0.956 45 H 0.080 0.920 46 H 0.100 0.900 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -17.925 -3.648 -16.141 24.395 hybrid contribution 0.091 1.359 0.639 1.504 sum -17.834 -2.289 -15.502 23.740 Atomic orbital electron populations 1.23843 0.95567 1.02294 1.00183 1.22770 0.95665 0.98318 1.00135 1.21534 0.88991 0.95834 0.92507 1.87929 1.44565 1.37385 1.60418 1.22539 0.92846 0.87071 0.98944 1.21211 0.95777 0.97445 0.99706 1.21534 0.96787 0.99935 0.99474 1.20526 0.82596 0.83718 0.83717 1.90722 1.73233 1.27226 1.50905 1.45994 1.31703 1.17411 1.42070 1.21416 0.87928 0.97880 0.91969 1.23147 0.95614 0.95335 0.86331 0.92659 1.21312 0.89070 0.89719 0.97348 1.44033 1.51820 1.33874 1.02057 1.19146 1.42533 0.92543 0.84596 0.91386 1.25062 1.00669 0.95425 0.98380 1.70009 1.53331 1.06935 1.24240 0.86323 0.78160 0.79297 0.82713 1.20977 1.21484 1.20792 1.21605 0.93947 0.98974 0.87255 1.23004 0.93895 0.86390 0.99493 1.87770 1.68559 1.42617 1.32043 0.87761 0.88445 0.86503 0.92820 0.92352 0.93226 0.93173 0.90220 0.90196 0.88757 0.88840 0.76412 0.90040 0.90787 0.88588 0.95050 0.93303 0.95551 0.91976 0.90027 0.93881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.08 14.31 29.02 0.42 -0.67 16 2 C -0.15 -1.11 9.89 -36.03 -0.36 -1.47 16 3 C 0.09 0.67 6.35 36.00 0.23 0.90 16 4 O -0.38 -3.99 10.33 -35.23 -0.36 -4.35 16 5 C 0.06 0.52 5.94 37.16 0.22 0.74 16 6 C -0.10 -1.06 4.87 -26.73 -0.13 -1.19 16 7 C -0.14 -1.26 5.70 -27.88 -0.16 -1.42 16 8 C 0.51 7.08 7.83 -10.98 -0.09 6.99 16 9 O -0.54 -9.91 15.98 5.56 0.09 -9.82 16 10 N -0.72 -9.91 5.45 -60.29 -0.33 -10.23 16 11 C 0.13 2.23 5.37 -4.04 -0.02 2.20 16 12 C 0.06 1.03 2.87 -26.58 -0.08 0.95 16 13 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 14 C 0.15 3.56 4.73 -3.54 -0.02 3.55 16 15 N -0.59 -14.68 3.05 -171.82 -0.52 -15.21 16 16 C -0.26 -6.97 9.65 -15.06 -0.15 -7.11 16 17 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 18 C 0.00 0.10 4.95 -17.43 -0.09 0.02 16 19 N -0.90 -25.78 11.14 55.49 0.62 -25.17 16 20 Si 0.91 21.29 29.59 -169.99 -5.03 16.26 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.11 2.23 6.73 -3.53 -0.02 2.20 16 25 C 0.05 0.85 6.98 37.31 0.26 1.12 16 26 O -0.39 -7.08 10.13 -35.23 -0.36 -7.44 16 27 H 0.10 0.50 8.06 -52.48 -0.42 0.08 16 28 H 0.10 0.49 7.90 -52.49 -0.41 0.07 16 29 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 30 H 0.05 0.35 7.86 -51.93 -0.41 -0.06 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 35 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.40 4.60 8.35 -40.82 -0.34 4.26 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.10 2.48 6.14 -51.92 -0.32 2.16 16 42 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 46 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 387.58 15.07 5.84 5.84 Total: -1.00 -32.57 387.58 -8.24 -40.81 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -8.20 Total: 2.49 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 0.02 Total: 6.81 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -0.23 Total: -50.61 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.63 Total: -21.61 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.57 -8.24 -40.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753655247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.944 kcal (2) G-P(sol) polarization free energy of solvation -32.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds