Wall clock time and date at job start Tue Mar 31 2020 10:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34773 * 120.00116 * 2 1 4 4 O 1.21283 * 119.99816 * 179.97438 * 3 2 1 5 5 C 1.50694 * 119.99935 * 359.97438 * 3 2 1 6 6 C 1.53000 * 109.47512 * 180.02562 * 5 3 2 7 7 O 1.42961 * 109.47682 * 184.99492 * 6 5 3 8 8 C 1.43091 * 113.77088 * 181.20386 * 7 6 5 9 9 C 1.53253 * 108.94262 * 57.97383 * 8 7 6 10 10 C 1.53253 * 108.84850 * 305.47575 * 9 8 7 11 11 O 1.42972 * 109.47080 * 64.99776 * 6 5 3 12 12 C 1.46508 * 120.00042 * 179.97438 * 2 1 3 13 13 C 1.53032 * 109.45998 * 60.02885 * 12 2 1 14 14 C 1.53189 * 109.31376 * 178.60426 * 13 12 2 15 15 N 1.46924 * 108.76631 * 54.65333 * 14 13 12 16 16 C 1.36940 * 120.62781 * 126.40842 * 15 14 13 17 17 H 1.07999 * 119.99879 * 332.60830 * 16 15 14 18 18 C 1.38810 * 119.99659 * 152.60870 * 16 15 14 19 19 N 1.31628 * 119.99836 * 159.34365 * 18 16 15 20 20 Si 1.86797 * 120.00242 * 339.34203 * 18 16 15 21 21 H 1.48495 * 109.46963 * 92.94578 * 20 18 16 22 22 H 1.48500 * 109.47188 * 212.94520 * 20 18 16 23 23 H 1.48497 * 109.46955 * 332.94574 * 20 18 16 24 24 C 1.46924 * 118.74208 * 306.38575 * 15 14 13 25 25 C 1.53040 * 109.45782 * 299.97555 * 12 2 1 26 26 H 1.09003 * 109.46659 * 90.00275 * 1 2 3 27 27 H 1.09006 * 109.47195 * 210.00160 * 1 2 3 28 28 H 1.08994 * 109.47292 * 330.00475 * 1 2 3 29 29 H 1.09001 * 109.47778 * 60.00132 * 5 3 2 30 30 H 1.09002 * 109.46988 * 299.99768 * 5 3 2 31 31 H 1.09002 * 109.46768 * 305.00372 * 6 5 3 32 32 H 1.09006 * 109.55540 * 177.81649 * 8 7 6 33 33 H 1.08997 * 109.56152 * 298.02383 * 8 7 6 34 34 H 1.09002 * 109.57512 * 65.28517 * 9 8 7 35 35 H 1.09000 * 109.57507 * 185.53774 * 9 8 7 36 36 H 1.08994 * 109.56408 * 174.35924 * 10 9 8 37 37 H 1.09002 * 109.55903 * 294.68894 * 10 9 8 38 38 H 1.08994 * 109.46190 * 180.02562 * 12 2 1 39 39 H 1.09005 * 109.50102 * 298.56926 * 13 12 2 40 40 H 1.09003 * 109.49906 * 58.65976 * 13 12 2 41 41 H 1.09002 * 109.59445 * 294.86625 * 14 13 12 42 42 H 1.09005 * 109.70473 * 174.51251 * 14 13 12 43 43 H 0.96996 * 119.99747 * 179.97438 * 19 18 16 44 44 H 1.09006 * 109.58441 * 293.82318 * 24 15 14 45 45 H 1.08996 * 109.70588 * 173.46681 * 24 15 14 46 46 H 1.08997 * 109.50093 * 301.33475 * 25 12 2 47 47 H 1.08998 * 109.50152 * 61.43522 * 25 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4722 -0.0006 6 6 2.3796 3.6352 -0.0011 7 8 1.6687 4.8700 0.1157 8 6 2.5127 6.0254 0.0971 9 6 3.3199 6.0310 -1.2056 10 6 4.0649 4.6977 -1.3322 11 8 3.1223 3.6267 -1.2227 12 6 2.1976 -1.2688 0.0006 13 6 1.8282 -2.0713 -1.2490 14 6 2.6220 -3.3814 -1.2628 15 7 2.3849 -4.0910 0.0017 16 6 1.9519 -5.3901 0.0021 17 1 1.3732 -5.7667 -0.8284 18 6 2.2568 -6.2230 1.0699 19 7 1.5379 -7.3038 1.2877 20 14 3.6874 -5.8099 2.1978 21 1 3.1933 -5.0224 3.3558 22 1 4.3130 -7.0658 2.6840 23 1 4.6930 -5.0131 1.4502 24 6 2.6217 -3.3805 1.2657 25 6 1.8281 -2.0702 1.2509 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5137 29 1 0.7584 2.5303 0.8891 30 1 0.7592 2.5298 -0.8909 31 1 3.0638 3.5286 0.8407 32 1 1.9003 6.9255 0.1509 33 1 3.1920 5.9949 0.9490 34 1 2.6451 6.1541 -2.0528 35 1 4.0368 6.8518 -1.1876 36 1 4.5626 4.6482 -2.3006 37 1 4.8043 4.6159 -0.5355 38 1 3.2691 -1.0694 0.0009 39 1 0.7609 -2.2925 -1.2371 40 1 2.0698 -1.4903 -2.1391 41 1 3.6851 -3.1636 -1.3658 42 1 2.2936 -4.0014 -2.0970 43 1 1.7512 -7.8860 2.0336 44 1 3.6848 -3.1627 1.3689 45 1 2.2924 -3.9978 2.1016 46 1 2.0697 -1.4886 2.1405 47 1 0.7609 -2.2915 1.2391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005284436.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:18 Heat of formation + Delta-G solvation = -99.761433 kcal Electronic energy + Delta-G solvation = -27284.586047 eV Core-core repulsion = 23468.373046 eV Total energy + Delta-G solvation = -3816.213001 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.52076 -39.67431 -37.66843 -35.91142 -35.23471 -33.54947 -32.49346 -30.93303 -30.39614 -29.72698 -26.92660 -26.28408 -25.28910 -23.76893 -22.81347 -21.80270 -21.41421 -19.59154 -18.92077 -17.85339 -17.09209 -16.92141 -16.57270 -16.29572 -15.78750 -15.40026 -15.12241 -15.02152 -14.80453 -14.17117 -13.75772 -13.58967 -13.45413 -13.34846 -13.12477 -13.03420 -12.93417 -12.44930 -12.26216 -12.10204 -11.91040 -11.85635 -11.76501 -11.41358 -11.36431 -10.88258 -10.81994 -10.53038 -10.31191 -10.17231 -10.08378 -9.93211 -9.83147 -9.60797 -9.46470 -8.63598 -8.43828 -6.98623 -5.94763 -3.30498 2.68027 2.80180 3.33019 3.39958 3.48070 3.50347 3.54238 4.35873 4.37694 4.47710 4.53846 4.60388 4.73016 4.87354 4.96094 4.96735 5.04720 5.06438 5.21509 5.24882 5.29613 5.36051 5.38951 5.40746 5.48171 5.56357 5.67608 5.68452 5.73743 5.83414 6.04976 6.08807 6.21212 6.34804 6.42497 6.53703 6.61605 6.63059 6.67886 6.76332 6.90609 6.92219 7.48897 7.96303 8.23890 8.32987 8.94105 9.72359 10.10149 11.21167 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.031302 B = 0.002855 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.301461 B = 9804.782717 C = 9935.014788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.608 5.608 3 C 0.518 3.482 4 O -0.534 6.534 5 C -0.126 4.126 6 C 0.264 3.736 7 O -0.396 6.396 8 C 0.059 3.941 9 C -0.194 4.194 10 C 0.058 3.942 11 O -0.376 6.376 12 C 0.146 3.854 13 C -0.139 4.139 14 C 0.151 3.849 15 N -0.606 5.606 16 C -0.259 4.259 17 H 0.086 0.914 18 C 0.023 3.977 19 N -0.909 5.909 20 Si 0.881 3.119 21 H -0.289 1.289 22 H -0.303 1.303 23 H -0.270 1.270 24 C 0.129 3.871 25 C -0.140 4.140 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.114 0.886 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.025 0.975 42 H 0.067 0.933 43 H 0.262 0.738 44 H 0.027 0.973 45 H 0.076 0.924 46 H 0.055 0.945 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.823 26.814 -2.742 26.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.341 5.341 3 C 0.306 3.694 4 O -0.411 6.411 5 C -0.166 4.166 6 C 0.169 3.831 7 O -0.317 6.317 8 C -0.017 4.017 9 C -0.231 4.231 10 C -0.019 4.019 11 O -0.296 6.296 12 C 0.044 3.956 13 C -0.179 4.179 14 C 0.024 3.976 15 N -0.330 5.330 16 C -0.387 4.387 17 H 0.104 0.896 18 C -0.176 4.176 19 N -0.552 5.552 20 Si 0.712 3.288 21 H -0.216 1.216 22 H -0.231 1.231 23 H -0.195 1.195 24 C 0.003 3.997 25 C -0.180 4.180 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.132 0.868 30 H 0.127 0.873 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.117 0.883 37 H 0.072 0.928 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.094 0.906 46 H 0.074 0.926 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.433 26.492 -2.789 26.642 hybrid contribution 0.928 0.420 0.878 1.345 sum 0.495 26.912 -1.911 26.985 Atomic orbital electron populations 1.21819 0.79804 1.03347 1.02017 1.48055 1.07039 1.06068 1.72959 1.20127 0.87925 0.84910 0.76472 1.90711 1.13711 1.87143 1.49493 1.21498 0.98445 0.90554 1.06115 1.22888 0.88935 0.83879 0.87438 1.88049 1.35446 1.14754 1.93473 1.22629 0.94084 0.88759 0.96254 1.22811 1.01155 0.99334 0.99850 1.22610 0.90837 0.85425 1.02998 1.88192 1.52954 1.48711 1.39786 1.21129 0.97444 0.81133 0.95941 1.22351 1.01710 0.97653 0.96179 1.20892 0.96056 0.91084 0.89533 1.44399 1.78392 1.10825 0.99384 1.18922 1.27385 0.84955 1.07445 0.89628 1.25279 0.98418 0.95632 0.98254 1.69839 1.38751 1.15882 1.30690 0.86976 0.85032 0.76215 0.80609 1.21647 1.23145 1.19468 1.21310 0.96393 0.91616 0.90414 1.22387 1.01899 0.97518 0.96180 0.92450 0.90198 0.91359 0.86772 0.87319 0.91789 0.88274 0.92756 0.90009 0.89737 0.88328 0.92753 0.88590 0.91614 0.92445 0.95754 0.91492 0.92782 0.95546 0.90643 0.92605 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 9.33 59.85 0.56 1.31 16 2 N -0.61 -8.44 2.76 -173.89 -0.48 -8.92 16 3 C 0.52 7.48 7.55 -10.99 -0.08 7.40 16 4 O -0.53 -9.70 14.75 -8.83 -0.13 -9.83 16 5 C -0.13 -1.37 4.33 -27.89 -0.12 -1.49 16 6 C 0.26 3.11 2.80 37.16 0.10 3.22 16 7 O -0.40 -4.22 10.54 -59.04 -0.62 -4.84 16 8 C 0.06 0.45 6.96 37.29 0.26 0.71 16 9 C -0.19 -1.38 6.35 -26.47 -0.17 -1.55 16 10 C 0.06 0.55 6.96 37.29 0.26 0.81 16 11 O -0.38 -4.95 9.77 -64.75 -0.63 -5.59 16 12 C 0.15 2.44 2.48 -67.89 -0.17 2.27 16 13 C -0.14 -2.32 5.34 -26.62 -0.14 -2.46 16 14 C 0.15 3.00 6.52 -3.71 -0.02 2.98 16 15 N -0.61 -14.40 2.77 -172.32 -0.48 -14.87 16 16 C -0.26 -7.20 10.04 -15.06 -0.15 -7.35 16 17 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 18 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 19 N -0.91 -27.79 13.97 55.49 0.78 -27.02 16 20 Si 0.88 22.56 24.35 -169.99 -4.14 18.42 16 21 H -0.29 -7.11 6.62 56.52 0.37 -6.74 16 22 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 23 H -0.27 -6.85 6.63 56.52 0.37 -6.48 16 24 C 0.13 2.84 4.20 -3.71 -0.02 2.82 16 25 C -0.14 -2.49 5.31 -26.61 -0.14 -2.63 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.87 6.46 -51.93 -0.34 0.54 16 28 H 0.07 0.52 6.44 -51.93 -0.33 0.19 16 29 H 0.11 0.96 7.40 -51.93 -0.38 0.58 16 30 H 0.11 1.07 8.11 -51.93 -0.42 0.65 16 31 H 0.06 0.79 7.95 -51.93 -0.41 0.37 16 32 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 1.81 6.90 -51.93 -0.36 1.46 16 39 H 0.07 1.09 7.72 -51.93 -0.40 0.69 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 43 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.03 0.59 7.08 -51.93 -0.37 0.22 16 45 H 0.08 1.81 4.50 -51.93 -0.23 1.57 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 47 H 0.07 1.21 6.72 -51.93 -0.35 0.86 16 LS Contribution 357.66 15.07 5.39 5.39 Total: -1.00 -34.00 357.66 -8.09 -42.09 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -7.85 Total: -1.44 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 0.08 Total: 6.61 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.18 Total: -50.81 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -1.39 Total: -20.26 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.14 Total: 18.42 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.00 -8.09 -42.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005284436.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.670 kcal (2) G-P(sol) polarization free energy of solvation -34.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds