Wall clock time and date at job start Tue Mar 31 2020 11:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42908 * 113.99839 * 2 1 4 4 C 1.52995 * 112.84770 * 296.69597 * 3 2 1 5 5 C 1.50700 * 109.47326 * 298.54911 * 4 3 2 6 6 O 1.21280 * 120.00136 * 355.60800 * 5 4 3 7 7 N 1.34776 * 119.99997 * 175.60563 * 5 4 3 8 8 C 1.46504 * 120.00149 * 179.97438 * 7 5 4 9 9 H 1.09004 * 109.44836 * 325.04292 * 8 7 5 10 10 C 1.53039 * 109.45525 * 85.00064 * 8 7 5 11 11 C 1.53198 * 109.30924 * 181.38512 * 10 8 7 12 12 N 1.46926 * 108.77866 * 305.36935 * 11 10 8 13 13 C 1.36936 * 120.62923 * 233.58639 * 12 11 10 14 14 H 1.08003 * 119.99605 * 151.71693 * 13 12 11 15 15 C 1.38813 * 120.00084 * 331.71849 * 13 12 11 16 16 N 1.31618 * 119.99825 * 343.02424 * 15 13 12 17 17 Si 1.86802 * 120.00061 * 163.02608 * 15 13 12 18 18 H 1.48498 * 109.47150 * 94.97857 * 17 15 13 19 19 H 1.48496 * 109.47112 * 214.98392 * 17 15 13 20 20 H 1.48504 * 109.46927 * 334.98161 * 17 15 13 21 21 C 1.46924 * 118.73599 * 53.60498 * 12 11 10 22 22 C 1.53190 * 108.89570 * 306.32126 * 21 12 11 23 23 H 1.09001 * 109.49266 * 174.65941 * 22 21 12 24 24 O 1.42897 * 109.49656 * 294.75470 * 22 21 12 25 25 C 1.53779 * 113.61287 * 67.89026 * 3 2 1 26 26 C 1.53950 * 87.01792 * 89.22945 * 25 3 2 27 27 C 1.53776 * 87.11394 * 25.36452 * 26 25 3 28 28 H 1.08997 * 109.46803 * 305.45122 * 1 2 3 29 29 H 1.08994 * 109.47139 * 65.46339 * 1 2 3 30 30 H 1.09003 * 109.46526 * 185.45308 * 1 2 3 31 31 H 1.09004 * 109.47176 * 178.54763 * 4 3 2 32 32 H 1.08999 * 109.47610 * 58.55328 * 4 3 2 33 33 H 0.97000 * 120.00079 * 0.02562 * 7 5 4 34 34 H 1.09001 * 109.49704 * 61.43954 * 10 8 7 35 35 H 1.08991 * 109.50315 * 301.33767 * 10 8 7 36 36 H 1.09000 * 109.58432 * 185.57936 * 11 10 8 37 37 H 1.08996 * 109.58560 * 65.16087 * 11 10 8 38 38 H 0.97001 * 119.99455 * 180.02562 * 16 15 13 39 39 H 1.08998 * 109.58525 * 66.18592 * 21 12 11 40 40 H 1.09004 * 109.58347 * 186.45823 * 21 12 11 41 41 H 0.96695 * 114.00253 * 299.99934 * 24 22 21 42 42 H 1.08995 * 113.61808 * 203.74719 * 25 3 2 43 43 H 1.08999 * 113.61670 * 334.65482 * 25 3 2 44 44 H 1.09001 * 113.53988 * 270.80957 * 26 25 3 45 45 H 1.09004 * 113.74275 * 139.94742 * 26 25 3 46 46 H 1.09001 * 113.61756 * 220.09076 * 27 26 25 47 47 H 1.08997 * 113.69527 * 89.19284 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6732 2.1059 -1.2596 5 6 2.2184 1.3917 -2.4695 6 8 2.8856 0.3883 -2.3319 7 7 1.9646 1.8680 -3.7044 8 6 2.4951 1.1741 -4.8806 9 1 3.4739 0.7565 -4.6448 10 6 1.5419 0.0452 -5.2794 11 6 2.1168 -0.7000 -6.4882 12 7 2.3844 0.2703 -7.5585 13 6 1.8686 0.0847 -8.8134 14 1 1.6607 0.9371 -9.4432 15 6 1.6130 -1.1989 -9.2759 16 7 2.1583 -2.2354 -8.6755 17 14 0.4950 -1.4550 -10.7504 18 1 1.3169 -1.5560 -11.9831 19 1 -0.2830 -2.7069 -10.5701 20 1 -0.4376 -0.3056 -10.8700 21 6 3.2162 1.4432 -7.2569 22 6 2.6302 2.1676 -6.0409 23 1 3.2915 2.9839 -5.7502 24 8 1.3425 2.6910 -6.3724 25 6 1.7762 2.0840 1.3054 26 6 3.0790 1.4481 1.8237 27 6 3.5070 1.3135 0.3528 28 1 -0.3633 0.5960 0.8371 29 1 -0.3633 0.4267 -0.9348 30 1 -0.3632 -1.0231 0.0977 31 1 2.1206 3.0974 -1.1907 32 1 0.5912 2.2012 -1.3509 33 1 1.4312 2.6707 -3.8145 34 1 0.5699 0.4645 -5.5392 35 1 1.4287 -0.6472 -4.4453 36 1 1.3968 -1.4401 -6.8374 37 1 3.0449 -1.1959 -6.2041 38 1 1.9799 -3.1324 -8.9990 39 1 4.2340 1.1222 -7.0355 40 1 3.2238 2.1161 -8.1144 41 1 1.3514 3.3233 -7.1039 42 1 1.8360 3.1657 1.1855 43 1 0.8873 1.7659 1.8501 44 1 2.9276 0.4915 2.3237 45 1 3.7027 2.1324 2.3991 46 1 4.0132 0.3744 0.1295 47 1 4.0410 2.1835 -0.0293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099794621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:44 Heat of formation + Delta-G solvation = -82.514795 kcal Electronic energy + Delta-G solvation = -27593.133537 eV Core-core repulsion = 23777.668407 eV Total energy + Delta-G solvation = -3815.465131 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.52112 -39.15612 -37.70202 -35.64099 -34.90725 -34.15264 -31.91957 -30.73588 -29.56946 -28.55749 -27.15595 -25.65659 -25.08408 -23.36265 -22.26886 -21.73489 -20.04618 -19.57051 -19.33272 -17.28661 -16.82523 -16.43961 -16.17938 -15.88279 -15.36300 -15.15942 -14.85661 -14.56964 -14.24778 -14.20319 -13.90870 -13.73459 -13.48640 -13.13362 -12.84043 -12.54994 -12.29885 -12.05301 -11.98915 -11.67492 -11.47120 -11.17583 -11.13901 -11.00043 -10.96059 -10.82167 -10.67291 -10.27263 -10.24973 -10.18980 -10.01483 -9.73326 -9.61719 -9.40591 -9.19765 -8.60422 -8.36783 -6.64410 -5.76726 -3.19431 2.94210 3.36542 3.39642 3.45787 3.48085 3.66135 4.32088 4.42965 4.49074 4.55825 4.69011 4.72002 5.02467 5.15452 5.17268 5.23784 5.29071 5.36103 5.38601 5.39431 5.43461 5.49750 5.57089 5.64648 5.65059 5.70524 5.79417 6.00633 6.04836 6.08890 6.13726 6.29780 6.44209 6.53256 6.60471 6.69468 6.87207 7.01382 7.21935 7.43654 7.70441 7.80405 7.86229 8.10237 8.46347 8.57874 9.21710 9.84608 10.41334 11.31654 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.025250 B = 0.003140 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.638191 B = 8916.258870 C = 9316.702725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.344 6.344 3 C 0.112 3.888 4 C -0.160 4.160 5 C 0.508 3.492 6 O -0.522 6.522 7 N -0.725 5.725 8 C 0.164 3.836 9 H 0.089 0.911 10 C -0.142 4.142 11 C 0.175 3.825 12 N -0.582 5.582 13 C -0.250 4.250 14 H 0.063 0.937 15 C 0.002 3.998 16 N -0.901 5.901 17 Si 0.902 3.098 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.279 1.279 21 C 0.118 3.882 22 C 0.082 3.918 23 H 0.045 0.955 24 O -0.555 6.555 25 C -0.166 4.166 26 C -0.137 4.137 27 C -0.115 4.115 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.398 0.602 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.089 0.911 37 H 0.019 0.981 38 H 0.254 0.746 39 H 0.026 0.974 40 H 0.060 0.940 41 H 0.372 0.628 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.084 0.916 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.470 12.626 18.105 22.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.262 6.262 3 C 0.071 3.929 4 C -0.201 4.201 5 C 0.293 3.707 6 O -0.397 6.397 7 N -0.376 5.376 8 C 0.060 3.940 9 H 0.107 0.893 10 C -0.182 4.182 11 C 0.048 3.952 12 N -0.304 5.304 13 C -0.380 4.380 14 H 0.081 0.919 15 C -0.197 4.197 16 N -0.545 5.545 17 Si 0.732 3.268 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.205 1.205 21 C -0.010 4.010 22 C 0.021 3.979 23 H 0.062 0.938 24 O -0.360 6.360 25 C -0.203 4.203 26 C -0.174 4.174 27 C -0.152 4.152 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.118 0.882 32 H 0.108 0.892 33 H 0.231 0.769 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.037 0.963 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.079 0.921 41 H 0.218 0.782 42 H 0.107 0.893 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.086 0.914 46 H 0.103 0.897 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.063 11.126 18.635 21.730 hybrid contribution -0.974 0.820 -1.381 1.879 sum -2.037 11.946 17.253 21.084 Atomic orbital electron populations 1.22750 0.81818 1.02712 0.99770 1.88058 1.18864 1.24825 1.94437 1.22179 0.95879 0.83787 0.91029 1.22225 1.02968 1.00610 0.94255 1.20365 0.80917 0.85229 0.84151 1.90735 1.38464 1.24455 1.86088 1.46235 1.55075 1.30576 1.05723 1.21022 0.98571 0.92379 0.82050 0.89344 1.22464 0.99439 0.96670 0.99662 1.20765 0.98510 0.91177 0.84706 1.43899 1.56010 1.22731 1.07760 1.19102 1.35770 0.91475 0.91629 0.91881 1.25051 1.00196 0.96197 0.98214 1.70040 1.43911 0.98038 1.42492 0.86288 0.80704 0.77378 0.82425 1.21539 1.21573 1.20453 1.21534 0.93593 0.91263 0.94576 1.22688 0.84906 0.94310 0.96046 0.93770 1.86442 1.29788 1.63862 1.55900 1.23609 0.99125 1.00186 0.97430 1.22815 0.96671 1.01110 0.96796 1.22883 0.93948 1.03535 0.94881 0.94122 0.94139 0.89579 0.88162 0.89156 0.76876 0.91776 0.93047 0.89311 0.96279 0.93604 0.95598 0.92142 0.78220 0.89315 0.90974 0.89858 0.91405 0.89712 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.52 101.05 1.06 1.34 16 2 O -0.34 -4.78 9.84 -48.42 -0.48 -5.26 16 3 C 0.11 1.27 0.38 -89.81 -0.03 1.24 16 4 C -0.16 -1.72 4.88 -27.89 -0.14 -1.85 16 5 C 0.51 7.68 7.57 -10.99 -0.08 7.60 16 6 O -0.52 -10.05 14.58 -7.63 -0.11 -10.16 16 7 N -0.72 -10.74 5.05 -53.61 -0.27 -11.01 16 8 C 0.16 2.95 2.20 -67.73 -0.15 2.80 16 9 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 10 C -0.14 -3.00 5.51 -26.61 -0.15 -3.15 16 11 C 0.17 4.36 5.30 -3.71 -0.02 4.34 16 12 N -0.58 -14.52 2.94 -172.32 -0.51 -15.02 16 13 C -0.25 -6.82 9.58 -15.06 -0.14 -6.97 16 14 H 0.06 1.67 7.89 -52.48 -0.41 1.26 16 15 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 16 N -0.90 -26.53 11.21 55.49 0.62 -25.91 16 17 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C 0.12 2.38 6.15 -3.71 -0.02 2.36 16 22 C 0.08 1.36 3.40 -26.45 -0.09 1.27 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 24 O -0.56 -9.02 12.10 -35.23 -0.43 -9.44 16 25 C -0.17 -1.39 7.20 -25.83 -0.19 -1.58 16 26 C -0.14 -1.22 8.02 -25.83 -0.21 -1.43 16 27 C -0.12 -1.29 6.54 -25.92 -0.17 -1.46 16 28 H 0.04 0.34 6.70 -51.93 -0.35 -0.01 16 29 H 0.04 0.44 7.02 -51.93 -0.36 0.07 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 0.85 7.00 -51.93 -0.36 0.48 16 33 H 0.40 5.01 8.26 -40.82 -0.34 4.67 16 34 H 0.06 1.41 7.62 -51.93 -0.40 1.02 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 41 H 0.37 4.77 9.08 45.56 0.41 5.18 16 42 H 0.09 0.59 8.10 -51.93 -0.42 0.17 16 43 H 0.07 0.58 6.84 -51.93 -0.36 0.22 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.09 0.87 8.10 -51.93 -0.42 0.45 16 LS Contribution 368.57 15.07 5.55 5.55 Total: -1.00 -33.51 368.57 -8.12 -41.63 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -7.07 Total: 8.33 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -0.41 Total: 4.49 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: -0.15 Total: -51.94 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -1.01 Total: -24.86 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.51 -8.12 -41.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099794621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.883 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds