Wall clock time and date at job start Tue Mar 31 2020 11:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99912 * 2 1 4 4 C 1.52999 * 109.47221 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.46728 * 65.00652 * 4 3 2 6 6 C 1.42899 * 113.99778 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.46785 * 179.97438 * 6 5 4 8 8 O 1.21276 * 120.00221 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99728 * 179.97438 * 7 6 5 10 10 C 1.46879 * 120.46640 * 359.72776 * 9 7 6 11 11 C 1.52867 * 109.01521 * 235.48654 * 10 9 7 12 12 C 1.52673 * 109.17216 * 307.81332 * 11 10 9 13 13 C 1.53476 * 113.62002 * 188.99461 * 12 11 10 14 14 N 1.47666 * 85.98991 * 137.71057 * 13 12 11 15 15 C 1.36928 * 134.46160 * 155.71224 * 14 13 12 16 16 H 1.08005 * 120.00181 * 179.97438 * 15 14 13 17 17 C 1.38811 * 120.00425 * 359.95566 * 15 14 13 18 18 N 1.31619 * 119.99371 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00460 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46837 * 60.00243 * 19 17 15 21 21 H 1.48497 * 109.46894 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47278 * 299.99999 * 19 17 15 23 23 C 1.47674 * 91.08197 * 335.68200 * 14 13 12 24 24 C 1.52674 * 113.18485 * 57.46494 * 12 11 10 25 25 C 1.46887 * 120.46230 * 179.97438 * 9 7 6 26 26 H 1.08999 * 109.47239 * 59.99584 * 1 2 3 27 27 H 1.08999 * 109.46873 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47167 * 299.99421 * 1 2 3 29 29 H 1.09000 * 109.46865 * 60.00255 * 3 2 1 30 30 H 1.08994 * 109.47229 * 300.00235 * 3 2 1 31 31 H 1.09000 * 109.47486 * 305.00590 * 4 3 2 32 32 H 1.09001 * 109.47362 * 184.99867 * 4 3 2 33 33 H 1.08997 * 109.47171 * 299.99768 * 6 5 4 34 34 H 1.08997 * 109.47442 * 59.99964 * 6 5 4 35 35 H 1.08999 * 109.58608 * 355.30592 * 10 9 7 36 36 H 1.08998 * 109.59431 * 115.74854 * 10 9 7 37 37 H 1.08999 * 109.60980 * 187.84078 * 11 10 9 38 38 H 1.08998 * 109.44499 * 67.69697 * 11 10 9 39 39 H 1.09004 * 113.79495 * 251.97676 * 13 12 11 40 40 H 1.08999 * 113.79242 * 23.44271 * 13 12 11 41 41 H 0.97006 * 119.99916 * 180.02562 * 18 17 15 42 42 H 1.08996 * 113.79116 * 270.04843 * 23 14 13 43 43 H 1.08998 * 113.78991 * 138.58101 * 23 14 13 44 44 H 1.08999 * 109.53287 * 182.51420 * 24 12 11 45 45 H 1.09008 * 109.53030 * 62.29172 * 24 12 11 46 46 H 1.08997 * 109.58643 * 244.25479 * 25 9 7 47 47 H 1.08997 * 109.58773 * 4.69360 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5794 -1.2203 6 6 5.3822 0.4200 -1.3222 7 6 5.7213 -0.2248 -2.6414 8 8 4.8372 -0.5193 -3.4175 9 7 7.0073 -0.4743 -2.9586 10 6 8.0866 -0.1165 -2.0288 11 6 9.0878 0.7850 -2.7511 12 6 9.5171 0.1147 -4.0539 13 6 10.6827 0.8248 -4.7558 14 7 11.2211 -0.5276 -5.0041 15 6 12.0716 -1.0657 -5.9324 16 1 12.3151 -2.1173 -5.8963 17 6 12.6207 -0.2599 -6.9203 18 7 12.3241 1.0217 -6.9643 19 14 13.7816 -0.9939 -8.1864 20 1 13.0781 -2.0603 -8.9434 21 1 14.2267 0.0681 -9.1241 22 1 14.9631 -1.5726 -7.4979 23 6 10.4753 -1.0670 -3.8493 24 6 8.3463 -0.2021 -4.9811 25 6 7.3494 -1.1029 -4.2413 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8508 0.5685 0.8426 32 1 3.9784 2.1766 0.0902 33 1 5.8631 1.3961 -1.2602 34 1 5.7363 -0.2119 -0.5077 35 1 7.6704 0.4147 -1.1729 36 1 8.5920 -1.0209 -1.6900 37 1 9.9607 0.9433 -2.1179 38 1 8.6190 1.7440 -2.9718 39 1 10.3923 1.3557 -5.6625 40 1 11.2976 1.4270 -4.0870 41 1 12.7075 1.5849 -7.6549 42 1 11.0285 -1.0270 -2.9110 43 1 10.0199 -2.0396 -4.0354 44 1 8.7134 -0.7171 -5.8688 45 1 7.8524 0.7245 -5.2742 46 1 7.8018 -2.0781 -4.0612 47 1 6.4478 -1.2212 -4.8423 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753673172.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:03 Heat of formation + Delta-G solvation = -63.514615 kcal Electronic energy + Delta-G solvation = -26467.216955 eV Core-core repulsion = 22652.575734 eV Total energy + Delta-G solvation = -3814.641221 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.35742 -38.98403 -38.34310 -37.15862 -35.68046 -32.51870 -31.49761 -30.76912 -30.41412 -27.83595 -26.68792 -26.37801 -25.00832 -23.56291 -23.00635 -22.80056 -21.26206 -19.59432 -17.80827 -17.31828 -17.09174 -16.74765 -16.63635 -16.08074 -15.86469 -15.42000 -15.15316 -14.86567 -14.65355 -14.63318 -13.84297 -13.77318 -13.68633 -13.26013 -12.89911 -12.60732 -12.43857 -12.35606 -12.31962 -12.02928 -11.70325 -11.68554 -11.37804 -11.10156 -11.02011 -10.84759 -10.81291 -10.37573 -10.14902 -10.01980 -9.94103 -9.72935 -9.69266 -9.47473 -9.33538 -8.76724 -8.41875 -6.84396 -5.74425 -3.06120 2.65815 2.71727 3.40625 3.44809 3.44889 3.45955 3.66486 4.46417 4.47764 4.67677 4.80820 4.82676 4.92790 4.95745 5.00548 5.02608 5.06362 5.10024 5.15844 5.21851 5.31774 5.35336 5.37522 5.39732 5.49970 5.53534 5.70587 5.87493 5.91988 5.98146 6.18441 6.27893 6.30972 6.44630 6.61775 6.65586 6.75445 6.81926 6.86272 6.93494 7.25027 7.39143 7.48593 7.60323 8.01210 8.25890 9.07351 9.73533 10.63735 11.42491 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.042269 B = 0.002304 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.263099 B =12149.711197 C =12358.544213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.061 3.939 5 O -0.355 6.355 6 C 0.045 3.955 7 C 0.514 3.486 8 O -0.525 6.525 9 N -0.605 5.605 10 C 0.108 3.892 11 C -0.120 4.120 12 C -0.109 4.109 13 C 0.173 3.827 14 N -0.609 5.609 15 C -0.221 4.221 16 H 0.077 0.923 17 C -0.008 4.008 18 N -0.922 5.922 19 Si 0.910 3.090 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.286 1.286 23 C 0.126 3.874 24 C -0.096 4.096 25 C 0.115 3.885 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.039 0.961 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.024 0.976 41 H 0.253 0.747 42 H 0.031 0.969 43 H 0.041 0.959 44 H 0.087 0.913 45 H 0.060 0.940 46 H 0.068 0.932 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.559 2.167 17.478 24.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.013 4.013 4 C -0.016 4.016 5 O -0.273 6.273 6 C -0.035 4.035 7 C 0.301 3.699 8 O -0.401 6.401 9 N -0.340 5.340 10 C -0.014 4.014 11 C -0.159 4.159 12 C -0.110 4.110 13 C 0.048 3.952 14 N -0.335 5.335 15 C -0.349 4.349 16 H 0.095 0.905 17 C -0.205 4.205 18 N -0.569 5.569 19 Si 0.741 3.259 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.213 1.213 23 C 0.000 4.000 24 C -0.134 4.134 25 C -0.007 4.007 26 H 0.061 0.939 27 H 0.104 0.896 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.042 0.958 41 H 0.063 0.937 42 H 0.048 0.952 43 H 0.059 0.941 44 H 0.106 0.894 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.842 1.782 16.614 24.445 hybrid contribution 1.000 0.106 -0.316 1.054 sum -16.842 1.888 16.298 23.512 Atomic orbital electron populations 1.22744 0.81059 1.02914 0.99805 1.87982 1.19612 1.27180 1.95354 1.22541 0.92181 0.85659 1.00950 1.22591 0.93696 0.97629 0.87653 1.88088 1.19663 1.81992 1.37604 1.22260 0.83862 1.00788 0.96541 1.20131 0.82530 0.79248 0.87980 1.90710 1.46529 1.51667 1.51172 1.48063 1.05102 1.61047 1.19820 1.21710 0.88631 0.99636 0.91458 1.21759 0.98339 0.98411 0.97345 1.22389 0.95382 0.98899 0.94340 1.22230 0.87700 0.88668 0.96608 1.45947 1.54036 1.05413 1.28103 1.18958 1.19148 0.93181 1.03622 0.90475 1.24762 1.00722 0.95652 0.99350 1.69806 1.47534 1.03993 1.35557 0.86229 0.80765 0.77775 0.81171 1.21109 1.21619 1.21300 1.22593 0.90990 0.95265 0.91148 1.21499 0.93981 0.99568 0.98369 1.21712 0.99516 0.95861 0.83573 0.93934 0.89560 0.94273 0.91730 0.92182 0.92215 0.91506 0.90300 0.90356 0.90617 0.90913 0.90569 0.91764 0.90997 0.95792 0.93668 0.95168 0.94125 0.89418 0.92107 0.91340 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.21 10.67 -40.08 -0.43 -4.64 16 3 C 0.06 0.53 6.32 37.16 0.23 0.77 16 4 C 0.06 0.52 6.32 37.16 0.23 0.76 16 5 O -0.36 -4.61 9.84 -59.73 -0.59 -5.20 16 6 C 0.05 0.49 4.75 36.01 0.17 0.66 16 7 C 0.51 7.60 7.77 -10.98 -0.09 7.52 16 8 O -0.53 -10.08 15.89 -14.35 -0.23 -10.31 16 9 N -0.60 -8.23 2.95 -172.93 -0.51 -8.74 16 10 C 0.11 1.18 6.19 -3.90 -0.02 1.16 16 11 C -0.12 -1.57 5.24 -26.97 -0.14 -1.72 16 12 C -0.11 -1.89 0.77 -154.43 -0.12 -2.01 16 13 C 0.17 3.93 6.64 -3.17 -0.02 3.91 16 14 N -0.61 -15.18 3.53 -179.79 -0.64 -15.82 16 15 C -0.22 -6.14 10.70 -15.06 -0.16 -6.31 16 16 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 17 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 18 N -0.92 -27.20 11.39 55.49 0.63 -26.57 16 19 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 C 0.13 2.44 7.72 -3.15 -0.02 2.42 16 24 C -0.10 -1.64 5.22 -26.70 -0.14 -1.78 16 25 C 0.11 1.74 6.30 -3.64 -0.02 1.72 16 26 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.66 7.71 -51.93 -0.40 0.26 16 34 H 0.08 0.66 7.91 -51.93 -0.41 0.25 16 35 H 0.08 0.60 5.89 -51.93 -0.31 0.29 16 36 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 37 H 0.08 0.95 8.12 -51.93 -0.42 0.53 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 1.84 7.12 -51.93 -0.37 1.47 16 40 H 0.02 0.56 8.09 -51.93 -0.42 0.14 16 41 H 0.25 7.29 8.31 -40.82 -0.34 6.96 16 42 H 0.03 0.56 8.07 -51.93 -0.42 0.15 16 43 H 0.04 0.76 7.41 -51.93 -0.38 0.38 16 44 H 0.09 1.73 8.01 -51.93 -0.42 1.31 16 45 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 46 H 0.07 1.00 7.49 -51.93 -0.39 0.61 16 47 H 0.09 1.43 6.97 -51.93 -0.36 1.07 16 LS Contribution 375.89 15.07 5.66 5.66 Total: -1.00 -35.47 375.89 -8.27 -43.74 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -8.07 Total: -3.38 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 0.92 Total: 8.10 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.51 Total: -51.13 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -1.24 Total: -20.14 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.47 -8.27 -43.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753673172.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.779 kcal (2) G-P(sol) polarization free energy of solvation -35.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds