Wall clock time and date at job start Tue Mar 31 2020 10:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20755 * 120.00421 * 2 1 4 4 C 1.50708 * 119.99841 * 179.97438 * 2 1 3 5 5 C 1.52997 * 109.47145 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.47039 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.47296 * 179.97438 * 6 5 4 8 8 O 1.21287 * 119.99641 * 0.02562 * 7 6 5 9 9 N 1.34767 * 120.00267 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00462 * 174.88649 * 9 7 6 11 11 C 1.52998 * 109.44670 * 302.68450 * 10 9 7 12 12 O 1.42897 * 109.47468 * 300.69120 * 11 10 9 13 13 C 1.53039 * 109.45540 * 62.64673 * 10 9 7 14 14 C 1.53187 * 109.31432 * 58.66165 * 13 10 9 15 15 N 1.46928 * 108.77881 * 54.63029 * 14 13 10 16 16 C 1.36937 * 120.63228 * 126.37121 * 15 14 13 17 17 H 1.08002 * 119.99519 * 211.72086 * 16 15 14 18 18 C 1.38813 * 119.99689 * 31.71805 * 16 15 14 19 19 N 1.31618 * 120.00338 * 11.03898 * 18 16 15 20 20 Si 1.86794 * 119.99660 * 191.03691 * 18 16 15 21 21 H 1.48505 * 109.47211 * 59.99953 * 20 18 16 22 22 H 1.48498 * 109.47195 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47264 * 300.00199 * 20 18 16 24 24 C 1.46931 * 118.73596 * 306.39629 * 15 14 13 25 25 C 1.53031 * 109.46403 * 182.71688 * 10 9 7 26 26 H 1.08998 * 109.47284 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46540 * 299.99844 * 1 2 3 28 28 H 1.08994 * 109.46485 * 59.99565 * 1 2 3 29 29 H 1.09000 * 109.46779 * 60.00020 * 4 2 1 30 30 H 1.09003 * 109.46926 * 300.00346 * 4 2 1 31 31 H 1.09000 * 109.47358 * 60.00262 * 5 4 2 32 32 H 1.09003 * 109.47399 * 299.99943 * 5 4 2 33 33 H 1.09000 * 109.47075 * 59.99790 * 6 5 4 34 34 H 1.09003 * 109.46735 * 300.00052 * 6 5 4 35 35 H 0.97003 * 119.99744 * 354.88912 * 9 7 6 36 36 H 1.09003 * 109.47214 * 60.69526 * 11 10 9 37 37 H 1.09004 * 109.47052 * 180.69299 * 11 10 9 38 38 H 0.96700 * 114.00397 * 179.97438 * 12 11 10 39 39 H 1.09000 * 109.50088 * 298.70528 * 13 10 9 40 40 H 1.09001 * 109.49813 * 178.61028 * 13 10 9 41 41 H 1.09001 * 109.58972 * 174.42167 * 14 13 10 42 42 H 1.09005 * 109.58503 * 294.69997 * 14 13 10 43 43 H 0.96996 * 119.99714 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.58266 * 173.39546 * 24 15 14 45 45 H 1.08997 * 109.58715 * 293.81668 * 24 15 14 46 46 H 1.09003 * 109.50267 * 181.39167 * 25 10 9 47 47 H 1.09007 * 109.50093 * 61.29623 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0457 0.0000 4 6 2.2605 -1.3052 0.0006 5 6 3.7647 -1.0257 0.0011 6 6 4.5297 -2.3508 0.0011 7 6 6.0114 -2.0755 0.0009 8 8 6.4157 -0.9320 0.0014 9 7 6.8871 -3.0999 0.0014 10 6 8.3236 -2.8356 -0.1118 11 6 8.5974 -2.0497 -1.3956 12 8 8.1482 -2.8057 -2.5220 13 6 8.7882 -2.0179 1.0955 14 6 8.4811 -2.7928 2.3808 15 7 9.0892 -4.1269 2.2855 16 6 9.9280 -4.5831 3.2670 17 1 10.7372 -5.2534 3.0173 18 6 9.7382 -4.1840 4.5829 19 7 8.6371 -3.5497 4.9260 20 14 11.0455 -4.5471 5.8668 21 1 12.3200 -3.8939 5.4740 22 1 10.6050 -4.0220 7.1841 23 1 11.2506 -6.0147 5.9630 24 6 8.7806 -4.9620 1.1166 25 6 9.0844 -4.1628 -0.1545 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3632 0.5139 -0.8899 29 1 1.9971 -1.8771 -0.8892 30 1 1.9971 -1.8764 0.8908 31 1 4.0278 -0.4539 0.8911 32 1 4.0285 -0.4543 -0.8889 33 1 4.2666 -2.9221 -0.8891 34 1 4.2660 -2.9225 0.8909 35 1 6.5662 -4.0122 0.0766 36 1 8.0650 -1.0992 -1.3603 37 1 9.6676 -1.8636 -1.4865 38 1 8.2900 -2.3670 -3.3720 39 1 8.2629 -1.0630 1.1121 40 1 9.8616 -1.8420 1.0245 41 1 8.8980 -2.2614 3.2363 42 1 7.4019 -2.8885 2.5007 43 1 8.5044 -3.2712 5.8456 44 1 9.3951 -5.8620 1.1381 45 1 7.7259 -5.2369 1.1321 46 1 10.1550 -3.9668 -0.2138 47 1 8.7699 -4.7346 -1.0276 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755176708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:04 Heat of formation + Delta-G solvation = -114.843403 kcal Electronic energy + Delta-G solvation = -27315.257032 eV Core-core repulsion = 23498.390027 eV Total energy + Delta-G solvation = -3816.867004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.15396 -39.55955 -37.57816 -36.08067 -34.30333 -33.91422 -31.93334 -31.00493 -30.36963 -29.72534 -27.79750 -26.65705 -23.87958 -22.88572 -22.21116 -20.90342 -20.03575 -19.70864 -18.60220 -17.16584 -17.05716 -16.47519 -16.17161 -15.79648 -15.18436 -15.04237 -14.97403 -14.81074 -14.18351 -13.98642 -13.65858 -13.43493 -13.24020 -13.09450 -12.78571 -12.68540 -12.59037 -12.27115 -11.96845 -11.80943 -11.78889 -11.42711 -11.36596 -11.19454 -10.84698 -10.76513 -10.71757 -10.37329 -10.25448 -10.02573 -9.91739 -9.79312 -9.64710 -9.52568 -8.94209 -8.46438 -8.45518 -6.59014 -5.76520 -3.24986 1.81180 3.08932 3.38547 3.44250 3.45028 3.52717 3.93431 4.48096 4.50173 4.67920 4.85007 4.88157 5.04335 5.12462 5.12841 5.30582 5.36484 5.40000 5.45290 5.49073 5.53118 5.56766 5.67191 5.71352 5.77391 5.85428 5.98086 6.13087 6.13833 6.29263 6.36741 6.40579 6.55434 6.69503 6.71287 6.83663 6.94145 7.13697 7.36666 7.42694 7.74032 7.78895 7.80834 8.02976 8.49713 8.70554 9.24242 9.85666 10.44293 11.31138 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.013994 B = 0.003546 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.425758 B = 7895.065557 C = 9273.413109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.351 3.649 3 O -0.455 6.455 4 C -0.174 4.174 5 C -0.095 4.095 6 C -0.141 4.141 7 C 0.517 3.483 8 O -0.545 6.545 9 N -0.702 5.702 10 C 0.195 3.805 11 C 0.062 3.938 12 O -0.569 6.569 13 C -0.153 4.153 14 C 0.183 3.817 15 N -0.591 5.591 16 C -0.255 4.255 17 H 0.063 0.937 18 C 0.005 3.995 19 N -0.903 5.903 20 Si 0.904 3.096 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.146 3.854 25 C -0.133 4.133 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.398 0.602 36 H 0.065 0.935 37 H 0.045 0.955 38 H 0.369 0.631 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.018 0.982 43 H 0.254 0.746 44 H 0.055 0.945 45 H 0.014 0.986 46 H 0.070 0.930 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.575 1.308 -13.666 18.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.226 3.774 3 O -0.328 6.328 4 C -0.211 4.211 5 C -0.132 4.132 6 C -0.182 4.182 7 C 0.303 3.697 8 O -0.424 6.424 9 N -0.353 5.353 10 C 0.109 3.891 11 C -0.017 4.017 12 O -0.373 6.373 13 C -0.193 4.193 14 C 0.057 3.943 15 N -0.314 5.314 16 C -0.385 4.385 17 H 0.080 0.920 18 C -0.194 4.194 19 N -0.547 5.547 20 Si 0.734 3.266 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.019 3.981 25 C -0.173 4.173 26 H 0.099 0.901 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.233 0.767 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.215 0.785 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.103 0.897 42 H 0.036 0.964 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.032 0.968 46 H 0.088 0.912 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.159 2.301 -13.009 17.954 hybrid contribution 0.591 -0.375 0.342 0.779 sum -11.568 1.925 -12.667 17.262 Atomic orbital electron populations 1.22279 0.94783 1.04501 1.04627 1.24669 0.91795 0.90540 0.70387 1.90448 1.71881 1.35259 1.35243 1.22218 0.96909 0.97387 1.04608 1.21120 0.91284 0.96155 1.04690 1.21671 0.92654 0.99724 1.04105 1.20434 0.88356 0.85236 0.75637 1.90619 1.80122 1.21571 1.50055 1.45914 1.06346 1.09312 1.73730 1.20258 0.80033 0.96068 0.92786 1.22772 0.97749 0.95316 0.85859 1.86461 1.86077 1.48294 1.16498 1.22602 1.00440 0.99738 0.96491 1.20636 0.95514 0.84901 0.93242 1.44033 1.54309 1.12348 1.20746 1.19115 1.05826 1.27280 0.86279 0.91969 1.25168 0.96493 1.00579 0.97115 1.69971 1.24388 1.42857 1.17467 0.86353 0.81325 0.78058 0.80859 1.21005 1.21628 1.20905 1.20894 0.96994 0.93355 0.86860 1.22239 0.99983 0.95395 0.99666 0.90051 0.89158 0.89265 0.88421 0.88190 0.90516 0.90892 0.89279 0.88959 0.76728 0.91696 0.93657 0.78541 0.90847 0.92271 0.89691 0.96403 0.93580 0.92617 0.96819 0.91178 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.21 10.33 36.01 0.37 -0.83 16 2 C 0.35 3.39 7.27 -29.03 -0.21 3.18 16 3 O -0.45 -6.56 16.72 6.00 0.10 -6.46 16 4 C -0.17 -1.43 5.55 -27.88 -0.15 -1.58 16 5 C -0.09 -1.16 3.79 -26.73 -0.10 -1.26 16 6 C -0.14 -1.67 5.70 -27.88 -0.16 -1.83 16 7 C 0.52 8.41 7.24 -10.99 -0.08 8.33 16 8 O -0.55 -10.62 12.23 5.55 0.07 -10.55 16 9 N -0.70 -11.38 3.98 -47.57 -0.19 -11.57 16 10 C 0.19 3.41 0.44 -131.78 -0.06 3.35 16 11 C 0.06 0.96 5.68 37.16 0.21 1.18 16 12 O -0.57 -7.89 12.84 -35.23 -0.45 -8.35 16 13 C -0.15 -3.15 4.71 -26.61 -0.13 -3.27 16 14 C 0.18 4.45 4.99 -3.71 -0.02 4.44 16 15 N -0.59 -14.64 2.98 -172.32 -0.51 -15.15 16 16 C -0.26 -6.97 9.57 -15.06 -0.14 -7.11 16 17 H 0.06 1.66 7.85 -52.49 -0.41 1.25 16 18 C 0.01 0.15 5.04 -17.43 -0.09 0.06 16 19 N -0.90 -26.27 11.10 55.49 0.62 -25.65 16 20 Si 0.90 21.76 29.57 -169.99 -5.03 16.73 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.15 2.95 6.24 -3.71 -0.02 2.93 16 25 C -0.13 -2.32 4.85 -26.62 -0.13 -2.45 16 26 H 0.08 0.30 8.00 -51.93 -0.42 -0.12 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 1.14 8.06 -51.93 -0.42 0.73 16 32 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.40 5.90 7.19 -40.82 -0.29 5.61 16 36 H 0.06 1.11 6.17 -51.93 -0.32 0.79 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.37 3.48 9.12 45.56 0.42 3.90 16 39 H 0.07 1.58 6.23 -51.93 -0.32 1.25 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.08 2.37 6.14 -51.93 -0.32 2.05 16 42 H 0.02 0.46 7.74 -51.93 -0.40 0.06 16 43 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 45 H 0.01 0.27 6.89 -51.93 -0.36 -0.08 16 46 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 47 H 0.06 1.02 7.66 -51.93 -0.40 0.62 16 LS Contribution 370.78 15.07 5.59 5.59 Total: -1.00 -34.47 370.78 -7.53 -42.00 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -7.01 Total: 8.29 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -0.71 Total: 5.13 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.09 Total: -52.38 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.28 Total: -25.36 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.47 -7.53 -42.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755176708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.840 kcal (2) G-P(sol) polarization free energy of solvation -34.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds