Wall clock time and date at job start Tue Mar 31 2020 10:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47047 * 2 1 4 4 H 1.09000 * 109.46701 * 55.00290 * 3 2 1 5 5 F 1.39893 * 109.47236 * 295.00090 * 3 2 1 6 6 C 1.50698 * 109.46908 * 175.00072 * 3 2 1 7 7 O 1.21285 * 120.00322 * 42.96814 * 6 3 2 8 8 N 1.34774 * 119.99883 * 222.96605 * 6 3 2 9 9 C 1.46924 * 120.63436 * 4.31848 * 8 6 3 10 10 C 1.53192 * 108.77907 * 233.58967 * 9 8 6 11 11 C 1.53039 * 109.30965 * 305.35994 * 10 9 8 12 12 C 1.52999 * 109.45953 * 181.38630 * 11 10 9 13 13 H 1.08997 * 110.88736 * 303.85176 * 12 11 10 14 14 C 1.55162 * 111.00330 * 179.97438 * 12 11 10 15 15 C 1.54322 * 102.94016 * 206.38758 * 14 12 11 16 16 N 1.47019 * 107.27601 * 22.18816 * 15 14 12 17 17 C 1.36935 * 125.65304 * 181.02389 * 16 15 14 18 18 H 1.07999 * 120.00157 * 175.05553 * 17 16 15 19 19 C 1.38810 * 119.99891 * 355.05727 * 17 16 15 20 20 N 1.31617 * 120.00290 * 158.44037 * 19 17 16 21 21 Si 1.86798 * 119.99913 * 338.43580 * 19 17 16 22 22 H 1.48503 * 109.47500 * 185.99426 * 21 19 17 23 23 H 1.48501 * 109.47461 * 305.99379 * 21 19 17 24 24 H 1.48505 * 109.47282 * 65.99241 * 21 19 17 25 25 C 1.47430 * 108.69851 * 1.29077 * 16 15 14 26 26 C 1.53044 * 109.52775 * 61.37384 * 11 10 9 27 27 C 1.46924 * 120.63140 * 184.29613 * 8 6 3 28 28 H 1.08995 * 109.47237 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46754 * 299.99913 * 1 2 3 30 30 H 1.09006 * 109.47109 * 59.99443 * 1 2 3 31 31 H 1.09000 * 109.47269 * 240.00488 * 2 1 3 32 32 H 1.08996 * 109.47040 * 120.00010 * 2 1 3 33 33 H 1.08997 * 109.58903 * 113.79391 * 9 8 6 34 34 H 1.09000 * 109.70258 * 353.44403 * 9 8 6 35 35 H 1.09003 * 109.49872 * 185.41579 * 10 9 8 36 36 H 1.08994 * 109.52379 * 65.32668 * 10 9 8 37 37 H 1.09005 * 109.46078 * 301.36305 * 11 10 9 38 38 H 1.08991 * 110.72215 * 88.02005 * 14 12 11 39 39 H 1.09007 * 110.86883 * 324.81691 * 14 12 11 40 40 H 1.09005 * 109.88155 * 262.77588 * 15 14 12 41 41 H 1.09003 * 110.01090 * 141.68403 * 15 14 12 42 42 H 0.97006 * 119.99759 * 354.97387 * 20 19 17 43 43 H 1.08999 * 110.36580 * 94.48544 * 25 16 15 44 44 H 1.09003 * 110.36352 * 216.80087 * 25 16 15 45 45 H 1.08998 * 109.49781 * 58.57490 * 26 11 10 46 46 H 1.08993 * 109.50067 * 178.67636 * 26 11 10 47 47 H 1.09002 * 109.59090 * 246.20164 * 27 8 6 48 48 H 1.09000 * 109.59036 * 6.48492 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 9 1.6699 2.0680 -1.1953 6 6 3.5419 1.4443 0.1238 7 8 4.2042 0.6560 -0.5172 8 7 4.1491 2.3220 0.9469 9 6 3.3579 3.2189 1.8002 10 6 3.8103 4.6614 1.5526 11 6 5.3223 4.7614 1.7674 12 6 5.7727 6.2081 1.5548 13 1 5.4789 6.5655 0.5679 14 6 7.3034 6.3506 1.7648 15 6 7.4581 7.8261 2.1896 16 7 6.1593 8.2663 2.7195 17 6 5.8711 9.5215 3.1849 18 1 4.8624 9.7695 3.4806 19 6 6.8756 10.4752 3.2768 20 7 6.5678 11.7545 3.3052 21 14 8.6641 9.9428 3.3601 22 1 9.5235 11.1302 3.5986 23 1 8.8408 8.9730 4.4708 24 1 9.0502 9.3019 2.0773 25 6 5.2203 7.1307 2.6728 26 6 6.0421 3.8514 0.7694 27 6 5.6150 2.3997 1.0082 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.5161 2.9608 2.8473 34 1 2.3003 3.1206 1.5555 35 1 3.2993 5.3273 2.2480 36 1 3.5684 4.9485 0.5294 37 1 5.5661 4.4507 2.7834 38 1 7.8397 6.1584 0.8357 39 1 7.6508 5.6837 2.5540 40 1 7.7314 8.4335 1.3267 41 1 8.2225 7.9138 2.9616 42 1 5.6463 12.0344 3.1887 43 1 5.2098 6.6076 3.6290 44 1 4.2186 7.4770 2.4179 45 1 5.7789 4.1457 -0.2466 46 1 7.1196 3.9408 0.9070 47 1 5.9574 2.0749 1.9908 48 1 6.0475 1.7584 0.2402 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039146021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:12 Heat of formation + Delta-G solvation = -63.427038 kcal Electronic energy + Delta-G solvation = -26966.603809 eV Core-core repulsion = 23164.339175 eV Total energy + Delta-G solvation = -3802.264634 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.22374 -40.53040 -38.73318 -37.01403 -34.49059 -33.95462 -32.13204 -31.57681 -29.69842 -28.52875 -27.94025 -25.27769 -23.87393 -23.29926 -22.31152 -21.21070 -20.43326 -19.75581 -19.45546 -18.23104 -17.42307 -17.00891 -16.42287 -15.83974 -15.35960 -15.21949 -14.93957 -14.78177 -14.35057 -14.17077 -13.96334 -13.68911 -13.44057 -13.24680 -13.10371 -12.85869 -12.68595 -12.53783 -12.41008 -12.23240 -12.19123 -11.60532 -11.54511 -11.38368 -11.26890 -11.14062 -11.07264 -10.83143 -10.53849 -10.40696 -10.08335 -9.94444 -9.89506 -9.43595 -9.02814 -8.90671 -8.58069 -7.04156 -6.31250 -3.17085 2.05234 2.48229 3.43837 3.52017 3.73029 3.79299 4.02159 4.05127 4.42033 4.52430 4.58705 4.62239 4.65316 4.80414 4.88891 4.97343 4.99642 5.05661 5.13965 5.19928 5.23571 5.36540 5.38167 5.44339 5.46746 5.48832 5.57028 5.63358 5.66311 5.72786 5.76465 5.81672 5.91698 5.97525 5.98423 6.18396 6.20211 6.25376 6.33289 6.46399 6.58548 6.80517 6.82609 6.93498 7.65700 7.68948 8.34709 9.05459 9.59738 10.25937 11.19015 Molecular weight = 312.20amu Principal moments of inertia in cm(-1) A = 0.030846 B = 0.002746 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.506271 B =10192.962842 C =10760.763367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.140 4.140 3 C 0.075 3.925 4 H 0.106 0.894 5 F -0.188 7.188 6 C 0.494 3.506 7 O -0.526 6.526 8 N -0.601 5.601 9 C 0.099 3.901 10 C -0.132 4.132 11 C -0.074 4.074 12 C -0.097 4.097 13 H 0.077 0.923 14 C -0.124 4.124 15 C 0.114 3.886 16 N -0.614 5.614 17 C -0.325 4.325 18 H 0.078 0.922 19 C -0.021 4.021 20 N -0.924 5.924 21 Si 1.060 2.940 22 H -0.302 1.302 23 H -0.299 1.299 24 H -0.283 1.283 25 C 0.143 3.857 26 C -0.129 4.129 27 C 0.110 3.890 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.025 0.975 42 H 0.262 0.738 43 H 0.021 0.979 44 H 0.042 0.958 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.070 0.930 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.076 -24.342 -4.406 26.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.178 4.178 3 C 0.036 3.964 4 H 0.123 0.877 5 F -0.169 7.169 6 C 0.279 3.721 7 O -0.401 6.401 8 N -0.335 5.335 9 C -0.024 4.024 10 C -0.170 4.170 11 C -0.093 4.093 12 C -0.116 4.116 13 H 0.095 0.905 14 C -0.162 4.162 15 C -0.011 4.011 16 N -0.341 5.341 17 C -0.452 4.452 18 H 0.096 0.904 19 C -0.221 4.221 20 N -0.565 5.565 21 Si 0.894 3.106 22 H -0.230 1.230 23 H -0.228 1.228 24 H -0.211 1.211 25 C 0.017 3.983 26 C -0.167 4.167 27 C -0.011 4.011 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.042 0.958 42 H 0.071 0.929 43 H 0.038 0.962 44 H 0.060 0.940 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.089 0.911 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.213 -24.071 -4.563 25.540 hybrid contribution -1.566 -0.379 -0.055 1.612 sum -8.779 -24.450 -4.618 26.386 Atomic orbital electron populations 1.21783 0.94043 1.02696 1.02616 1.21991 0.97333 0.93529 1.04992 1.21816 0.92248 0.96398 0.85931 0.87678 1.92891 1.91978 1.83888 1.48146 1.20947 0.90400 0.80936 0.79774 1.90715 1.66212 1.38472 1.44746 1.48221 1.07739 1.36553 1.40953 1.22018 0.95372 0.90226 0.94753 1.22003 0.96795 0.94911 1.03258 1.21099 0.93992 0.94887 0.99344 1.22428 0.95664 0.93353 1.00175 0.90494 1.22620 0.95817 0.97135 1.00599 1.21931 0.89389 0.93123 0.96639 1.44872 1.06983 1.08387 1.73877 1.20123 0.96841 0.85506 1.42694 0.90409 1.25755 1.04090 0.93036 0.99212 1.70905 1.20783 1.14191 1.50637 0.84018 0.76807 0.73350 0.76451 1.22992 1.22785 1.21059 1.21612 0.93833 0.88308 0.94545 1.21998 1.01086 0.93405 1.00247 1.21716 0.78642 0.97978 1.02807 0.91656 0.92264 0.91844 0.89473 0.89853 0.90450 0.89651 0.89759 0.91159 0.90722 0.91577 0.91666 0.93848 0.95807 0.92868 0.96170 0.94011 0.91403 0.90058 0.91138 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.83 37.16 0.37 -0.50 16 2 C -0.14 -1.03 5.39 -26.73 -0.14 -1.17 16 3 C 0.08 0.65 3.37 -27.88 -0.09 0.55 16 4 H 0.11 0.62 5.39 -51.93 -0.28 0.34 16 5 F -0.19 -2.08 16.75 2.25 0.04 -2.04 16 6 C 0.49 5.50 7.06 -10.99 -0.08 5.42 16 7 O -0.53 -7.64 15.99 5.55 0.09 -7.55 16 8 N -0.60 -5.82 2.97 -172.77 -0.51 -6.34 16 9 C 0.10 0.75 6.31 -3.71 -0.02 0.73 16 10 C -0.13 -1.26 5.24 -26.61 -0.14 -1.40 16 11 C -0.07 -0.82 1.68 -90.58 -0.15 -0.97 16 12 C -0.10 -1.44 2.58 -88.35 -0.23 -1.67 16 13 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 14 C -0.12 -1.97 5.27 -24.89 -0.13 -2.10 16 15 C 0.11 2.48 4.58 -3.07 -0.01 2.46 16 16 N -0.61 -14.99 3.35 -169.93 -0.57 -15.56 16 17 C -0.32 -9.35 10.51 -15.06 -0.16 -9.51 16 18 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 19 C -0.02 -0.64 5.48 -17.43 -0.10 -0.73 16 20 N -0.92 -29.26 13.70 55.49 0.76 -28.50 16 21 Si 1.06 26.93 24.61 -169.99 -4.18 22.74 16 22 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 23 H -0.30 -7.37 7.00 56.52 0.40 -6.97 16 24 H -0.28 -6.57 5.26 56.52 0.30 -6.27 16 25 C 0.14 2.71 5.95 -2.41 -0.01 2.70 16 26 C -0.13 -1.30 5.16 -26.61 -0.14 -1.44 16 27 C 0.11 1.07 6.42 -3.71 -0.02 1.04 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.40 7.94 -51.93 -0.41 -0.01 16 31 H 0.09 0.76 8.04 -51.93 -0.42 0.34 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.50 5.17 -51.93 -0.27 0.23 16 35 H 0.08 0.81 7.45 -51.93 -0.39 0.42 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 38 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 39 H 0.06 0.95 8.04 -51.93 -0.42 0.53 16 40 H 0.04 1.01 6.67 -51.93 -0.35 0.66 16 41 H 0.02 0.56 4.23 -51.93 -0.22 0.34 16 42 H 0.26 8.17 8.73 -40.82 -0.36 7.81 16 43 H 0.02 0.38 7.99 -51.93 -0.41 -0.04 16 44 H 0.04 0.79 8.05 -51.93 -0.42 0.38 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.08 0.78 7.21 -51.93 -0.37 0.41 16 47 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.09 0.99 7.03 -51.93 -0.37 0.62 16 LS Contribution 362.83 15.07 5.47 5.47 Total: -1.00 -34.47 362.83 -8.20 -42.68 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -8.23 Total: -4.33 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -1.07 Total: -6.57 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.32 Total: -50.40 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: 0.09 Total: -7.55 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 26.93 SS G_CDS: -4.18 Total: 22.74 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.47 -8.20 -42.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039146021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.751 kcal (2) G-P(sol) polarization free energy of solvation -34.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds