Wall clock time and date at job start Tue Mar 31 2020 09:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99720 * 2 1 4 4 H 1.48496 * 109.47319 * 239.99747 * 3 2 1 5 5 H 1.48503 * 109.47266 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46734 * 119.99794 * 3 2 1 7 7 C 1.37877 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00129 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47078 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46817 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47233 * 60.00194 * 11 10 9 13 13 N 1.46500 * 109.47023 * 179.97438 * 12 11 10 14 14 C 1.36829 * 125.05980 * 239.99589 * 13 12 11 15 15 C 1.50695 * 125.03747 * 0.02562 * 14 13 12 16 16 C 1.53007 * 109.46898 * 264.99789 * 15 14 13 17 17 N 1.46895 * 109.46834 * 180.02562 * 16 15 14 18 18 C 1.34245 * 109.92965 * 179.97438 * 14 13 12 19 19 C 1.46491 * 106.99459 * 0.02562 * 18 14 13 20 20 C 1.39637 * 134.03435 * 179.97438 * 19 18 14 21 21 C 1.36624 * 119.76177 * 180.02562 * 20 19 18 22 22 C 1.38832 * 120.53406 * 0.02562 * 21 20 19 23 23 C 1.37748 * 120.66369 * 0.02562 * 22 21 20 24 24 C 1.37686 * 125.06422 * 59.69272 * 13 12 11 25 25 C 1.52997 * 109.47060 * 299.99657 * 12 11 10 26 26 C 1.52999 * 109.47317 * 59.99960 * 25 12 11 27 27 H 0.96999 * 120.00366 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46959 * 299.99831 * 9 7 2 29 29 H 1.08993 * 109.47194 * 59.99505 * 10 9 7 30 30 H 1.09002 * 109.46695 * 299.99519 * 10 9 7 31 31 H 1.08992 * 109.47063 * 299.99823 * 11 10 9 32 32 H 1.09004 * 109.46733 * 179.97438 * 11 10 9 33 33 H 1.09002 * 109.47398 * 59.99826 * 12 11 10 34 34 H 1.08992 * 109.47206 * 24.99816 * 15 14 13 35 35 H 1.09001 * 109.46975 * 145.00035 * 15 14 13 36 36 H 1.09000 * 109.47106 * 299.99757 * 16 15 14 37 37 H 1.08994 * 109.47302 * 60.00036 * 16 15 14 38 38 H 1.00901 * 111.00518 * 56.05105 * 17 16 15 39 39 H 1.00903 * 111.00214 * 180.02562 * 17 16 15 40 40 H 1.07997 * 126.50766 * 180.02562 * 18 14 13 41 41 H 1.08001 * 120.11483 * 0.02850 * 20 19 18 42 42 H 1.07998 * 119.73277 * 179.97438 * 21 20 19 43 43 H 1.07995 * 119.66698 * 179.97438 * 22 21 20 44 44 H 1.07996 * 120.11358 * 179.97438 * 23 22 21 45 45 H 1.08996 * 109.47853 * 180.02562 * 25 12 11 46 46 H 1.09002 * 109.47153 * 300.00319 * 25 12 11 47 47 H 1.09000 * 109.47486 * 180.02562 * 26 25 12 48 48 H 1.09002 * 109.46716 * 60.00091 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9870 -0.0001 12 6 0.6012 -5.0678 -1.2497 13 7 -0.1308 -6.3368 -1.2506 14 6 -0.0382 -7.2969 -2.2210 15 6 0.8326 -7.2061 -3.4476 16 6 0.0093 -6.6659 -4.6187 17 7 0.8579 -6.5780 -5.8144 18 6 -0.8371 -8.3323 -1.9181 19 6 -1.4956 -8.0084 -0.6502 20 6 -2.4190 -8.6711 0.1610 21 6 -2.8511 -8.0837 1.3164 22 6 -2.3799 -6.8326 1.6906 23 6 -1.4696 -6.1608 0.9048 24 6 -1.0099 -6.7435 -0.2721 25 6 -0.3931 -3.9049 -1.2497 26 6 0.3718 -2.5799 -1.2490 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5567 0.8903 29 1 2.8721 -3.6042 0.8904 30 1 2.8720 -3.6042 -0.8895 31 1 0.8535 -5.0450 0.8896 32 1 2.1888 -5.8155 -0.0006 33 1 1.2282 -5.0098 -2.1395 34 1 1.6684 -6.5349 -3.2509 35 1 1.2130 -8.1966 -3.6972 36 1 -0.8266 -7.3372 -4.8154 37 1 -0.3712 -5.6755 -4.3690 38 1 1.2743 -7.4717 -6.0289 39 1 0.3369 -6.2231 -6.6023 40 1 -0.9694 -9.2332 -2.4988 41 1 -2.7903 -9.6444 -0.1240 42 1 -3.5656 -8.5965 1.9432 43 1 -2.7312 -6.3811 2.6066 44 1 -1.1092 -5.1878 1.2042 45 1 -1.0197 -3.9626 -2.1396 46 1 -1.0200 -3.9629 -0.3599 47 1 -0.3365 -1.7514 -1.2486 48 1 0.9988 -2.5218 -2.1388 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:42 Heat of formation + Delta-G solvation = 32.442222 kcal Electronic energy + Delta-G solvation = -26512.160393 eV Core-core repulsion = 23144.822187 eV Total energy + Delta-G solvation = -3367.338206 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.190 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.38789 -37.84221 -36.94179 -35.30200 -33.33898 -31.71581 -30.70200 -30.09426 -29.80750 -28.09651 -26.92441 -24.63995 -22.99794 -22.13910 -21.75636 -21.31291 -20.80405 -19.37688 -18.70084 -16.69176 -16.40871 -16.28154 -16.05722 -15.26004 -14.75734 -14.62615 -14.42490 -14.09125 -13.97200 -13.75193 -13.38514 -13.21257 -12.94637 -12.79582 -12.28865 -12.21793 -12.09127 -11.97997 -11.71851 -11.49090 -11.19927 -11.11221 -10.96330 -10.84641 -10.75636 -10.56828 -10.35596 -10.28444 -9.92166 -9.50601 -9.34824 -9.00911 -8.91040 -8.77632 -8.34490 -7.86617 -7.36224 -6.01452 -4.07902 1.33119 1.88037 2.83802 3.05930 3.30239 3.35290 3.37778 4.15226 4.27701 4.41668 4.79718 4.90282 4.92451 5.01112 5.05628 5.22603 5.28375 5.33132 5.34306 5.42559 5.55995 5.58495 5.64906 5.67236 5.82981 5.90632 5.96281 5.99771 6.10798 6.15789 6.20950 6.29195 6.32337 6.40839 6.53093 6.62969 6.69494 6.76992 6.82471 6.88145 6.98745 7.02299 7.10682 7.13259 7.20434 7.38194 7.53774 7.61540 7.70232 7.94043 8.08532 8.41702 8.95664 9.57256 11.04236 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.012750 B = 0.004246 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.593959 B = 6593.121222 C = 8141.933020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.105 4.105 11 C -0.125 4.125 12 C 0.137 3.863 13 N -0.464 5.464 14 C 0.088 3.912 15 C -0.059 4.059 16 C 0.067 3.933 17 N -0.851 5.851 18 C -0.215 4.215 19 C -0.113 4.113 20 C -0.080 4.080 21 C -0.151 4.151 22 C -0.109 4.109 23 C -0.119 4.119 24 C 0.109 3.891 25 C -0.124 4.124 26 C -0.106 4.106 27 H 0.261 0.739 28 H 0.026 0.974 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.032 0.968 37 H 0.075 0.925 38 H 0.339 0.661 39 H 0.344 0.656 40 H 0.138 0.862 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.047 0.953 46 H 0.062 0.938 47 H 0.098 0.902 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.088 -16.741 -5.274 17.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.144 4.144 11 C -0.164 4.164 12 C 0.036 3.964 13 N -0.145 5.145 14 C -0.022 4.022 15 C -0.097 4.097 16 C -0.064 4.064 17 N -0.380 5.380 18 C -0.241 4.241 19 C -0.117 4.117 20 C -0.098 4.098 21 C -0.170 4.170 22 C -0.128 4.128 23 C -0.139 4.139 24 C 0.002 3.998 25 C -0.162 4.162 26 C -0.144 4.144 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.050 0.950 37 H 0.093 0.907 38 H 0.151 0.849 39 H 0.157 0.843 40 H 0.156 0.844 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.139 0.861 44 H 0.143 0.857 45 H 0.066 0.934 46 H 0.081 0.919 47 H 0.116 0.884 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.619 -15.775 -4.882 16.720 hybrid contribution -0.252 0.241 -0.403 0.533 sum -2.871 -15.534 -5.285 16.657 Atomic orbital electron populations 1.69847 1.05858 1.26537 1.50681 1.24956 0.94829 0.99015 0.95068 0.86700 0.79651 0.83290 0.78609 1.20303 1.21325 1.20314 1.21155 0.92868 0.90613 1.50625 0.92759 1.18671 0.92554 0.91596 0.94175 1.21621 0.98669 0.93361 1.00700 1.21967 0.98274 0.99333 0.96777 1.21671 0.93627 0.80668 1.00404 1.44442 1.36329 1.16224 1.17458 1.20150 1.00280 0.89728 0.91994 1.20225 0.96949 1.02728 0.89809 1.21741 0.93695 1.01158 0.89772 1.58652 1.38705 1.33270 1.07416 1.21272 1.04144 1.00285 0.98352 1.19159 1.00834 0.95041 0.96687 1.20150 0.96549 0.99014 0.94123 1.20538 1.02399 0.96376 0.97725 1.20782 0.97522 0.95137 0.99396 1.20320 0.99711 1.00578 0.93312 1.18170 0.94609 0.94841 0.92184 1.22038 0.97445 0.95551 1.01205 1.21633 0.99696 0.94034 0.99069 0.92947 0.95607 0.92755 0.93095 0.91661 0.93055 0.88839 0.89821 0.89835 0.95008 0.90667 0.84918 0.84335 0.84383 0.86737 0.86620 0.86095 0.85713 0.93436 0.91913 0.88405 0.94478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.84 11.32 55.43 0.63 -24.21 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -13.70 8.56 -34.44 -0.29 -14.00 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.15 2.10 -91.77 -0.19 0.96 16 10 C -0.11 -2.10 5.14 -26.73 -0.14 -2.24 16 11 C -0.13 -2.19 5.23 -26.73 -0.14 -2.33 16 12 C 0.14 2.31 2.69 -67.93 -0.18 2.13 16 13 N -0.46 -7.41 2.65 -102.82 -0.27 -7.68 16 14 C 0.09 1.23 6.08 -81.77 -0.50 0.73 16 15 C -0.06 -0.67 5.56 -27.88 -0.16 -0.82 16 16 C 0.07 0.72 6.77 -3.82 -0.03 0.70 16 17 N -0.85 -7.90 9.62 -10.37 -0.10 -8.00 16 18 C -0.22 -2.97 10.95 -37.67 -0.41 -3.38 16 19 C -0.11 -1.73 6.37 -105.13 -0.67 -2.40 16 20 C -0.08 -1.08 10.05 -39.64 -0.40 -1.48 16 21 C -0.15 -1.95 9.97 -39.95 -0.40 -2.35 16 22 C -0.11 -1.52 10.01 -39.54 -0.40 -1.92 16 23 C -0.12 -1.91 8.52 -39.43 -0.34 -2.25 16 24 C 0.11 1.80 6.15 -83.99 -0.52 1.29 16 25 C -0.12 -2.36 5.24 -26.73 -0.14 -2.50 16 26 C -0.11 -2.38 4.98 -26.73 -0.13 -2.51 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 28 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.06 1.17 6.07 -51.93 -0.32 0.86 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.09 1.54 6.37 -51.93 -0.33 1.21 16 34 H 0.08 1.04 6.73 -51.93 -0.35 0.69 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.34 2.49 8.99 -39.29 -0.35 2.14 16 39 H 0.34 2.70 9.08 -39.29 -0.36 2.35 16 40 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 44 H 0.13 2.09 5.75 -52.49 -0.30 1.78 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.06 1.24 6.06 -51.93 -0.31 0.93 16 47 H 0.10 2.50 6.07 -51.93 -0.32 2.19 16 48 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 370.82 15.07 5.59 5.59 Total: -1.00 -28.58 370.82 -11.97 -40.55 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -7.67 Total: 8.60 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: -5.12 Total: -30.78 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.26 Total: -39.89 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.58 -11.97 -40.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.995 kcal (2) G-P(sol) polarization free energy of solvation -28.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds