Wall clock time and date at job start Tue Mar 31 2020 09:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99720 * 2 1 4 4 H 1.48496 * 109.47319 * 239.99747 * 3 2 1 5 5 H 1.48503 * 109.47266 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46734 * 119.99794 * 3 2 1 7 7 C 1.37877 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00129 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47078 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46817 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47233 * 60.00194 * 11 10 9 13 13 N 1.46500 * 109.47023 * 179.97438 * 12 11 10 14 14 C 1.36829 * 125.05980 * 239.99589 * 13 12 11 15 15 C 1.50695 * 125.03747 * 0.02562 * 14 13 12 16 16 C 1.53007 * 109.46898 * 264.99789 * 15 14 13 17 17 N 1.46895 * 109.46834 * 180.02562 * 16 15 14 18 18 C 1.34245 * 109.92965 * 179.97438 * 14 13 12 19 19 C 1.46491 * 106.99459 * 0.02562 * 18 14 13 20 20 C 1.39637 * 134.03435 * 179.97438 * 19 18 14 21 21 C 1.36624 * 119.76177 * 180.02562 * 20 19 18 22 22 C 1.38832 * 120.53406 * 0.02562 * 21 20 19 23 23 C 1.37748 * 120.66369 * 0.02562 * 22 21 20 24 24 C 1.37686 * 125.06422 * 59.69272 * 13 12 11 25 25 C 1.52997 * 109.47060 * 299.99657 * 12 11 10 26 26 C 1.52999 * 109.47317 * 59.99960 * 25 12 11 27 27 H 0.96999 * 120.00366 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46959 * 299.99831 * 9 7 2 29 29 H 1.08993 * 109.47194 * 59.99505 * 10 9 7 30 30 H 1.09002 * 109.46695 * 299.99519 * 10 9 7 31 31 H 1.08992 * 109.47063 * 299.99823 * 11 10 9 32 32 H 1.09004 * 109.46733 * 179.97438 * 11 10 9 33 33 H 1.09002 * 109.47398 * 59.99826 * 12 11 10 34 34 H 1.08992 * 109.47206 * 24.99816 * 15 14 13 35 35 H 1.09001 * 109.46975 * 145.00035 * 15 14 13 36 36 H 1.09000 * 109.47106 * 299.99757 * 16 15 14 37 37 H 1.08994 * 109.47302 * 60.00036 * 16 15 14 38 38 H 1.00901 * 111.00518 * 56.05105 * 17 16 15 39 39 H 1.00903 * 111.00214 * 180.02562 * 17 16 15 40 40 H 1.07997 * 126.50766 * 180.02562 * 18 14 13 41 41 H 1.08001 * 120.11483 * 0.02850 * 20 19 18 42 42 H 1.07998 * 119.73277 * 179.97438 * 21 20 19 43 43 H 1.07995 * 119.66698 * 179.97438 * 22 21 20 44 44 H 1.07996 * 120.11358 * 179.97438 * 23 22 21 45 45 H 1.08996 * 109.47853 * 180.02562 * 25 12 11 46 46 H 1.09002 * 109.47153 * 300.00319 * 25 12 11 47 47 H 1.09000 * 109.47486 * 180.02562 * 26 25 12 48 48 H 1.09002 * 109.46716 * 60.00091 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9870 -0.0001 12 6 0.6012 -5.0678 -1.2497 13 7 -0.1308 -6.3368 -1.2506 14 6 -0.0382 -7.2969 -2.2210 15 6 0.8326 -7.2061 -3.4476 16 6 0.0093 -6.6659 -4.6187 17 7 0.8579 -6.5780 -5.8144 18 6 -0.8371 -8.3323 -1.9181 19 6 -1.4956 -8.0084 -0.6502 20 6 -2.4190 -8.6711 0.1610 21 6 -2.8511 -8.0837 1.3164 22 6 -2.3799 -6.8326 1.6906 23 6 -1.4696 -6.1608 0.9048 24 6 -1.0099 -6.7435 -0.2721 25 6 -0.3931 -3.9049 -1.2497 26 6 0.3718 -2.5799 -1.2490 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5567 0.8903 29 1 2.8721 -3.6042 0.8904 30 1 2.8720 -3.6042 -0.8895 31 1 0.8535 -5.0450 0.8896 32 1 2.1888 -5.8155 -0.0006 33 1 1.2282 -5.0098 -2.1395 34 1 1.6684 -6.5349 -3.2509 35 1 1.2130 -8.1966 -3.6972 36 1 -0.8266 -7.3372 -4.8154 37 1 -0.3712 -5.6755 -4.3690 38 1 1.2743 -7.4717 -6.0289 39 1 0.3369 -6.2231 -6.6023 40 1 -0.9694 -9.2332 -2.4988 41 1 -2.7903 -9.6444 -0.1240 42 1 -3.5656 -8.5965 1.9432 43 1 -2.7312 -6.3811 2.6066 44 1 -1.1092 -5.1878 1.2042 45 1 -1.0197 -3.9626 -2.1396 46 1 -1.0200 -3.9629 -0.3599 47 1 -0.3365 -1.7514 -1.2486 48 1 0.9988 -2.5218 -2.1388 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:41 Heat of formation + Delta-G solvation = 18.575431 kcal Electronic energy + Delta-G solvation = -26512.761702 eV Core-core repulsion = 23144.822187 eV Total energy + Delta-G solvation = -3367.939515 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.190 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.53333 -39.33519 -38.09134 -36.20974 -35.08762 -33.21485 -31.74992 -31.56502 -31.20399 -29.53920 -27.96377 -26.45752 -23.98637 -23.51229 -23.33613 -22.40559 -22.15703 -20.55809 -20.29933 -18.43058 -17.86757 -17.41090 -16.87763 -16.62912 -16.22675 -15.81823 -15.57346 -15.38936 -15.10097 -14.98390 -14.75378 -14.69697 -14.37432 -14.07581 -13.84151 -13.58921 -13.24596 -13.14248 -13.09733 -12.86443 -12.69353 -12.58855 -12.43728 -12.29019 -12.16176 -12.04532 -12.02207 -11.74046 -11.53976 -11.21743 -10.87762 -10.71121 -10.45561 -10.38933 -9.63314 -8.98273 -8.47756 -8.08845 -6.22964 0.24240 0.77649 1.41713 1.42204 1.49834 1.76259 1.87770 2.43105 3.04848 3.17996 3.41346 3.56701 3.77023 3.84748 3.97909 4.05438 4.13010 4.18197 4.22852 4.30737 4.31577 4.40088 4.52631 4.60020 4.62470 4.64816 4.68442 4.73659 4.76886 4.80210 4.84011 5.03182 5.05481 5.06826 5.15129 5.18989 5.23130 5.26581 5.32648 5.52836 5.62206 5.63005 5.74504 5.92861 5.97299 6.05432 6.12875 6.19417 6.37124 6.41239 6.45096 6.62407 6.88741 7.45549 8.95047 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.012750 B = 0.004246 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.593959 B = 6593.121222 C = 8141.933020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.015 3.985 3 Si 0.950 3.050 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.054 0.946 9 C 0.047 3.953 10 C -0.096 4.096 11 C -0.115 4.115 12 C 0.151 3.849 13 N -0.473 5.473 14 C 0.078 3.922 15 C -0.053 4.053 16 C 0.074 3.926 17 N -0.857 5.857 18 C -0.211 4.211 19 C -0.131 4.131 20 C -0.080 4.080 21 C -0.151 4.151 22 C -0.110 4.110 23 C -0.147 4.147 24 C 0.083 3.917 25 C -0.111 4.111 26 C -0.095 4.095 27 H 0.260 0.740 28 H -0.008 1.008 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.042 0.958 37 H 0.049 0.951 38 H 0.352 0.648 39 H 0.352 0.648 40 H 0.167 0.833 41 H 0.144 0.856 42 H 0.148 0.852 43 H 0.137 0.863 44 H 0.104 0.896 45 H 0.050 0.950 46 H 0.048 0.952 47 H 0.063 0.937 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.823 -19.096 -6.158 20.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.776 3.224 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.134 4.134 11 C -0.153 4.153 12 C 0.050 3.950 13 N -0.155 5.155 14 C -0.029 4.029 15 C -0.091 4.091 16 C -0.057 4.057 17 N -0.389 5.389 18 C -0.236 4.236 19 C -0.135 4.135 20 C -0.098 4.098 21 C -0.170 4.170 22 C -0.130 4.130 23 C -0.167 4.167 24 C -0.024 4.024 25 C -0.149 4.149 26 C -0.133 4.133 27 H 0.069 0.931 28 H 0.010 0.990 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.090 0.910 35 H 0.128 0.872 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.165 0.835 39 H 0.166 0.834 40 H 0.184 0.816 41 H 0.162 0.838 42 H 0.166 0.834 43 H 0.155 0.845 44 H 0.122 0.878 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.081 0.919 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.349 -18.156 -5.777 19.197 hybrid contribution -0.403 0.936 -0.084 1.022 sum -2.752 -17.220 -5.861 18.397 Atomic orbital electron populations 1.70003 1.07163 1.27107 1.51358 1.25712 0.95597 1.02276 0.94828 0.85730 0.78470 0.79339 0.78844 1.19562 1.21136 1.19757 1.21555 0.93106 0.92092 1.50508 0.92813 1.18614 0.92938 0.92417 0.93155 1.21458 0.97896 0.93130 1.00963 1.21828 0.98280 0.98363 0.96850 1.21313 0.92793 0.80686 1.00250 1.44340 1.36770 1.16093 1.18312 1.20615 1.00813 0.89266 0.92250 1.20265 0.96067 1.03936 0.88853 1.21579 0.94088 0.99833 0.90193 1.58598 1.38684 1.34325 1.07327 1.21624 1.03206 1.00980 0.97792 1.19569 1.01494 0.94757 0.97708 1.20553 0.95555 0.99989 0.93720 1.20910 1.02371 0.95737 0.97934 1.21090 0.96605 0.95693 0.99574 1.20338 1.01496 1.00396 0.94472 1.18443 0.95424 0.95900 0.92588 1.21807 0.97485 0.94972 1.00653 1.21368 0.98861 0.94811 0.98295 0.93113 0.99010 0.92785 0.92432 0.92641 0.91208 0.88069 0.90976 0.87240 0.94025 0.93284 0.83450 0.83441 0.81552 0.83823 0.83450 0.84493 0.87829 0.93092 0.93291 0.91869 0.94656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.04 11.32 21.45 0.24 -52.80 16 2 C 0.01 0.80 5.30 84.65 0.45 1.25 16 3 Si 0.95 43.55 29.54 68.60 2.03 45.57 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.53 -29.24 8.56 25.60 0.22 -29.02 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.05 2.34 2.10 -11.54 -0.02 2.31 16 10 C -0.10 -3.90 5.14 30.59 0.16 -3.74 16 11 C -0.12 -4.05 5.23 30.60 0.16 -3.89 16 12 C 0.15 5.15 2.69 44.99 0.12 5.27 16 13 N -0.47 -14.95 2.65 -479.23 -1.27 -16.22 16 14 C 0.08 2.07 6.08 40.87 0.25 2.31 16 15 C -0.05 -1.09 5.56 29.85 0.17 -0.93 16 16 C 0.07 1.47 6.77 86.31 0.58 2.06 16 17 N -0.86 -14.25 9.62 -186.72 -1.80 -16.05 16 18 C -0.21 -5.29 10.95 23.51 0.26 -5.03 16 19 C -0.13 -3.79 6.37 -20.20 -0.13 -3.92 16 20 C -0.08 -1.94 10.05 22.23 0.22 -1.72 16 21 C -0.15 -3.52 9.97 22.03 0.22 -3.30 16 22 C -0.11 -3.02 10.01 22.30 0.22 -2.80 16 23 C -0.15 -4.84 8.52 22.37 0.19 -4.65 16 24 C 0.08 2.73 6.15 39.03 0.24 2.97 16 25 C -0.11 -4.40 5.24 30.59 0.16 -4.24 16 26 C -0.09 -4.45 4.98 30.60 0.15 -4.30 16 27 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 28 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 29 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.05 2.07 6.07 -2.39 -0.01 2.05 16 32 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.10 3.30 6.37 -2.39 -0.02 3.28 16 34 H 0.07 1.67 6.73 -2.39 -0.02 1.66 16 35 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.35 4.26 8.99 -89.69 -0.81 3.45 16 39 H 0.35 4.93 9.08 -89.69 -0.81 4.12 16 40 H 0.17 3.10 8.06 -2.91 -0.02 3.07 16 41 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 42 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 43 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 44 H 0.10 3.75 5.75 -2.91 -0.02 3.73 16 45 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.05 2.07 6.06 -2.39 -0.01 2.05 16 47 H 0.06 3.42 6.07 -2.39 -0.01 3.40 16 48 H 0.03 1.62 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -63.38 370.82 2.17 -61.21 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: -0.65 Total: 29.65 kcal Atomic # 6 Polarization: -54.99 SS G_CDS: 3.62 Total: -51.37 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -2.82 Total: -85.06 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -63.38 2.17 -61.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.782 kcal (2) G-P(sol) polarization free energy of solvation -63.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds