Wall clock time and date at job start Tue Mar 31 2020 10:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99622 * 2 1 4 4 H 1.48501 * 109.47213 * 270.00083 * 3 2 1 5 5 H 1.48500 * 109.47416 * 30.00071 * 3 2 1 6 6 H 1.48499 * 109.47039 * 150.00117 * 3 2 1 7 7 C 1.38810 * 120.00271 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99654 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00131 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00187 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47018 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.47390 * 305.00214 * 11 10 9 13 13 C 1.53004 * 109.47340 * 65.00015 * 11 10 9 14 14 C 1.52995 * 109.47383 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47226 * 300.00164 * 14 13 11 16 16 C 1.52994 * 109.47084 * 60.00207 * 15 14 13 17 17 C 1.52998 * 109.47111 * 184.99655 * 11 10 9 18 18 H 1.09005 * 109.46680 * 60.00190 * 17 11 10 19 19 N 1.46493 * 109.47575 * 300.00481 * 17 11 10 20 20 C 1.34780 * 120.00638 * 154.99889 * 19 17 11 21 21 O 1.21276 * 119.99455 * 355.09282 * 20 19 17 22 22 C 1.50699 * 120.00241 * 175.09992 * 20 19 17 23 23 C 1.52997 * 115.54523 * 294.14028 * 22 20 19 24 24 C 1.52998 * 109.47414 * 278.76006 * 23 22 20 25 25 F 1.39896 * 109.47520 * 177.75835 * 24 23 22 26 26 C 1.52991 * 117.52089 * 79.84059 * 22 20 19 27 27 C 1.53000 * 117.49887 * 148.47309 * 22 20 19 28 28 H 0.96996 * 120.00021 * 0.02562 * 1 2 3 29 29 H 0.97007 * 119.99973 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.46930 * 60.00371 * 10 9 7 31 31 H 1.08994 * 109.46926 * 299.99942 * 10 9 7 32 32 H 1.09004 * 109.46932 * 300.00111 * 13 11 10 33 33 H 1.09005 * 109.47052 * 59.99894 * 13 11 10 34 34 H 1.09005 * 109.46804 * 60.00121 * 14 13 11 35 35 H 1.09005 * 109.47236 * 180.02562 * 14 13 11 36 36 H 1.08999 * 109.46835 * 179.97438 * 15 14 13 37 37 H 1.08996 * 109.47013 * 299.99629 * 15 14 13 38 38 H 1.08998 * 109.47083 * 180.02562 * 16 15 14 39 39 H 1.08996 * 109.47667 * 59.99823 * 16 15 14 40 40 H 0.97009 * 119.99958 * 334.99338 * 19 17 11 41 41 H 1.09001 * 109.46934 * 158.76291 * 23 22 20 42 42 H 1.09000 * 109.47304 * 38.76269 * 23 22 20 43 43 H 1.09001 * 109.46843 * 57.75931 * 24 23 22 44 44 H 1.09005 * 109.47194 * 297.76291 * 24 23 22 45 45 H 1.09002 * 117.50094 * 214.96905 * 26 22 20 46 46 H 1.09005 * 117.50227 * 359.97438 * 26 22 20 47 47 H 1.08994 * 117.50079 * 359.97128 * 27 22 20 48 48 H 1.09004 * 117.49708 * 144.97354 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4707 0.0000 11 6 5.6164 -2.1911 0.0000 12 1 5.8659 -1.5451 -0.8417 13 6 6.0065 -1.4985 1.3074 14 6 7.5107 -1.2194 1.3077 15 6 8.2744 -2.5392 1.1822 16 6 7.8845 -3.2317 -0.1251 17 6 6.3805 -3.5106 -0.1256 18 1 6.1027 -4.0040 -1.0571 19 7 6.0452 -4.3788 1.0057 20 6 6.1630 -5.7162 0.8871 21 8 6.4604 -6.2062 -0.1817 22 6 5.9249 -6.6026 2.0823 23 6 6.9323 -6.4550 3.2243 24 6 8.1904 -7.2639 2.9024 25 9 9.1316 -7.0881 3.9223 26 6 4.4737 -6.9108 2.4560 27 6 5.3481 -7.9961 1.8247 28 1 -0.4850 0.8400 -0.0004 29 1 3.8647 -0.3619 -0.0004 30 1 3.8486 -3.0425 -0.8898 31 1 3.8493 -3.0421 0.8902 32 1 5.4621 -0.5583 1.3969 33 1 5.7570 -2.1444 2.1492 34 1 7.7606 -0.5736 0.4658 35 1 7.7887 -0.7263 2.2393 36 1 9.3461 -2.3403 1.1819 37 1 8.0246 -3.1849 2.0240 38 1 8.4282 -4.1722 -0.2143 39 1 8.1343 -2.5860 -0.9670 40 1 5.7385 -3.9911 1.8404 41 1 6.4896 -6.8244 4.1493 42 1 7.1964 -5.4040 3.3423 43 1 8.6108 -6.9210 1.9570 44 1 7.9329 -8.3202 2.8237 45 1 4.2365 -7.0086 3.5154 46 1 3.6906 -6.4722 1.8375 47 1 5.1404 -8.2716 0.7908 48 1 5.6867 -8.8078 2.4687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754345628.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:48 Heat of formation + Delta-G solvation = -76.251089 kcal Electronic energy + Delta-G solvation = -27445.645974 eV Core-core repulsion = 23642.825247 eV Total energy + Delta-G solvation = -3802.820727 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -47.86509 -40.67852 -38.92399 -36.86984 -34.87667 -33.68559 -32.00726 -31.44546 -30.15776 -29.84020 -25.70380 -24.84540 -23.35060 -22.75540 -22.47327 -22.06347 -20.76486 -19.84752 -19.02742 -17.75152 -17.32739 -16.45126 -16.17573 -15.82530 -15.48855 -15.18425 -15.01712 -14.82831 -14.48725 -14.31887 -14.01622 -13.63694 -13.45104 -13.07090 -12.97792 -12.81071 -12.56455 -12.31582 -12.16015 -11.95419 -11.85009 -11.76353 -11.62595 -11.12905 -11.08334 -11.01896 -10.83356 -10.78946 -10.52639 -10.32703 -10.27917 -10.05624 -9.97563 -9.76885 -9.59739 -8.99504 -8.89401 -7.25272 -5.79120 -3.14636 2.50513 3.03029 3.33703 3.36838 3.37729 3.42720 4.11647 4.36352 4.45152 4.53031 4.56349 4.66058 4.68705 4.75392 4.78230 4.81057 4.87040 5.07660 5.12471 5.19337 5.38282 5.44452 5.44961 5.47449 5.51053 5.53398 5.58963 5.62408 5.67786 5.70668 5.71863 5.76733 5.87924 5.95148 6.02376 6.06749 6.13383 6.22822 6.34526 6.45081 6.51033 6.66533 6.73316 7.50649 7.97056 8.19746 8.39865 9.18943 9.91182 10.11055 11.39410 Molecular weight = 312.20amu Principal moments of inertia in cm(-1) A = 0.015984 B = 0.003753 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.326261 B = 7457.983070 C = 8368.193047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.089 0.911 9 N -0.754 5.754 10 C 0.165 3.835 11 C -0.106 4.106 12 H 0.085 0.915 13 C -0.113 4.113 14 C -0.121 4.121 15 C -0.116 4.116 16 C -0.128 4.128 17 C 0.154 3.846 18 H 0.090 0.910 19 N -0.709 5.709 20 C 0.551 3.449 21 O -0.539 6.539 22 C -0.165 4.165 23 C -0.107 4.107 24 C 0.063 3.937 25 F -0.220 7.220 26 C -0.151 4.151 27 C -0.145 4.145 28 H 0.259 0.741 29 H 0.361 0.639 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.402 0.598 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.043 -12.457 6.763 22.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.400 5.400 10 C 0.038 3.962 11 C -0.125 4.125 12 H 0.103 0.897 13 C -0.150 4.150 14 C -0.159 4.159 15 C -0.153 4.153 16 C -0.167 4.167 17 C 0.049 3.951 18 H 0.108 0.892 19 N -0.361 5.361 20 C 0.336 3.664 21 O -0.416 6.416 22 C -0.168 4.168 23 C -0.145 4.145 24 C 0.008 3.992 25 F -0.201 7.201 26 C -0.188 4.188 27 C -0.182 4.182 28 H 0.069 0.931 29 H 0.194 0.806 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.238 0.762 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.124 0.876 46 H 0.124 0.876 47 H 0.125 0.875 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 18.051 -12.867 6.008 22.967 hybrid contribution 0.348 1.531 0.435 1.629 sum 18.399 -11.336 6.444 22.551 Atomic orbital electron populations 1.69702 1.05113 1.25813 1.57610 1.24669 0.95220 0.97169 1.02072 0.86555 0.79156 0.85030 0.77787 1.21097 1.21744 1.20352 1.19046 0.80668 0.94686 1.42946 0.89336 1.42713 1.03996 1.02154 1.91152 1.20610 0.87769 0.89223 0.98634 1.21678 0.96542 0.95206 0.99089 0.89685 1.21562 0.95138 1.01394 0.96951 1.21590 0.95506 0.97069 1.01710 1.21488 0.99370 0.96726 0.97727 1.21903 0.95734 1.00712 0.98327 1.20947 0.93859 0.90154 0.90100 0.89173 1.46052 1.67317 1.05611 1.17110 1.19395 0.76440 0.82347 0.88211 1.90691 1.47860 1.74708 1.28332 1.21339 0.97875 1.00395 0.97179 1.21616 0.93980 1.02160 0.96725 1.21971 0.87009 1.01532 0.88710 1.92765 1.67351 1.97066 1.62893 1.23177 0.91142 1.01976 1.02553 1.23011 1.01681 0.90366 1.03159 0.93057 0.80641 0.95594 0.95627 0.90873 0.92286 0.91950 0.92157 0.92351 0.92210 0.91791 0.90956 0.76166 0.89619 0.89890 0.90608 0.90466 0.87584 0.87648 0.87524 0.87934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.21 13.97 55.49 0.78 -28.44 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 3 Si 0.88 21.80 27.73 -169.99 -4.71 17.08 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 7 C -0.24 -6.82 10.47 -15.06 -0.16 -6.97 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 9 N -0.75 -17.34 5.13 -59.91 -0.31 -17.65 16 10 C 0.16 3.04 5.42 -4.04 -0.02 3.02 16 11 C -0.11 -1.49 2.02 -90.62 -0.18 -1.67 16 12 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 13 C -0.11 -1.46 4.90 -26.73 -0.13 -1.59 16 14 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 15 C -0.12 -1.14 5.76 -26.73 -0.15 -1.29 16 16 C -0.13 -1.39 5.60 -26.75 -0.15 -1.54 16 17 C 0.15 1.93 2.27 -67.95 -0.15 1.78 16 18 H 0.09 1.30 7.51 -51.93 -0.39 0.91 16 19 N -0.71 -8.20 3.61 -53.83 -0.19 -8.39 16 20 C 0.55 6.79 7.03 -10.98 -0.08 6.71 16 21 O -0.54 -8.50 16.34 5.56 0.09 -8.41 16 22 C -0.16 -1.53 1.88 -155.67 -0.29 -1.82 16 23 C -0.11 -0.83 5.60 -26.73 -0.15 -0.98 16 24 C 0.06 0.52 7.41 37.16 0.28 0.79 16 25 F -0.22 -2.28 17.36 2.25 0.04 -2.24 16 26 C -0.15 -1.30 9.88 -26.74 -0.26 -1.56 16 27 C -0.14 -1.23 9.36 -26.73 -0.25 -1.48 16 28 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 29 H 0.36 8.05 4.71 -40.82 -0.19 7.86 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.03 0.48 7.61 -51.93 -0.40 0.08 16 32 H 0.07 1.11 7.18 -51.93 -0.37 0.74 16 33 H 0.06 0.72 6.51 -51.93 -0.34 0.38 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.58 7.60 -51.93 -0.39 0.18 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.40 4.27 6.67 -40.82 -0.27 3.99 16 41 H 0.09 0.56 7.94 -51.93 -0.41 0.15 16 42 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.53 7.67 -51.93 -0.40 0.13 16 45 H 0.11 0.73 8.08 -51.93 -0.42 0.31 16 46 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.11 1.06 8.00 -51.93 -0.42 0.64 16 48 H 0.10 0.66 7.91 -51.93 -0.41 0.25 16 LS Contribution 379.05 15.07 5.71 5.71 Total: -1.00 -32.58 379.05 -8.79 -41.37 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -8.23 Total: 8.99 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -1.96 Total: -8.02 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 0.27 Total: -54.48 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.08 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.58 -8.79 -41.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754345628.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.879 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds