Wall clock time and date at job start Tue Mar 31 2020 10:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00461 * 2 1 4 4 H 1.48494 * 109.47148 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47046 * 300.00035 * 3 2 1 6 6 H 1.48502 * 109.46864 * 59.99561 * 3 2 1 7 7 C 1.38815 * 119.99747 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99929 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00034 * 359.72379 * 7 2 1 10 10 C 1.46492 * 119.99869 * 180.27638 * 9 7 2 11 11 C 1.53003 * 109.46999 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47141 * 305.00097 * 11 10 9 13 13 C 1.53003 * 109.46934 * 65.00212 * 11 10 9 14 14 C 1.53003 * 109.46934 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.46932 * 299.99710 * 14 13 11 16 16 C 1.53003 * 109.47075 * 60.00376 * 15 14 13 17 17 C 1.53000 * 109.46932 * 184.99922 * 11 10 9 18 18 H 1.09001 * 109.47351 * 300.00046 * 17 11 10 19 19 N 1.46503 * 109.47293 * 60.00616 * 17 11 10 20 20 C 1.34769 * 119.99705 * 204.99902 * 19 17 11 21 21 O 1.21282 * 120.00514 * 354.94690 * 20 19 17 22 22 C 1.50706 * 119.99930 * 174.95125 * 20 19 17 23 23 C 1.53001 * 115.54837 * 65.41152 * 22 20 19 24 24 C 1.52993 * 109.47335 * 65.30138 * 23 22 20 25 25 F 1.39903 * 109.47327 * 174.97731 * 24 23 22 26 26 C 1.52995 * 117.49907 * 279.74233 * 22 20 19 27 27 C 1.52996 * 117.50033 * 211.07970 * 22 20 19 28 28 H 0.96999 * 119.99426 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99812 * 0.27540 * 9 7 2 30 30 H 1.08997 * 109.47807 * 300.00093 * 10 9 7 31 31 H 1.09002 * 109.47260 * 60.00250 * 10 9 7 32 32 H 1.08996 * 109.46768 * 300.00226 * 13 11 10 33 33 H 1.09001 * 109.47301 * 59.99983 * 13 11 10 34 34 H 1.08998 * 109.46610 * 179.97438 * 14 13 11 35 35 H 1.09001 * 109.47141 * 59.99885 * 14 13 11 36 36 H 1.09001 * 109.47351 * 300.00046 * 15 14 13 37 37 H 1.09005 * 109.46711 * 180.02562 * 15 14 13 38 38 H 1.08996 * 109.46768 * 179.97438 * 16 15 14 39 39 H 1.08993 * 109.46965 * 59.99606 * 16 15 14 40 40 H 0.97001 * 119.99692 * 24.99518 * 19 17 11 41 41 H 1.09002 * 109.47170 * 185.30474 * 23 22 20 42 42 H 1.09008 * 109.46963 * 305.30463 * 23 22 20 43 43 H 1.09005 * 109.47563 * 294.97989 * 24 23 22 44 44 H 1.09004 * 109.47047 * 54.97735 * 24 23 22 45 45 H 1.08998 * 117.49980 * 359.97438 * 26 22 20 46 46 H 1.08999 * 117.49965 * 145.01950 * 26 22 20 47 47 H 1.08999 * 117.49937 * 214.97759 * 27 22 20 48 48 H 1.08993 * 117.50242 * 359.97438 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 0.0046 10 6 2.0579 -3.6568 0.0102 11 6 1.0636 -4.8197 0.0159 12 1 0.3798 -4.7089 0.8575 13 6 0.2684 -4.8172 -1.2912 14 6 -0.7255 -5.9804 -1.2857 15 6 0.0359 -7.3010 -1.1546 16 6 0.8312 -7.3036 0.1526 17 6 1.8245 -6.1405 0.1474 18 1 2.5083 -6.2513 -0.6942 19 7 2.5859 -6.1430 1.3990 20 6 3.6855 -6.9133 1.5172 21 8 3.9931 -7.6726 0.6230 22 6 4.5329 -6.8311 2.7608 23 6 3.8588 -7.3024 4.0509 24 6 3.5674 -8.8013 3.9561 25 9 3.0566 -9.2553 5.1768 26 6 5.5240 -5.6703 2.8649 27 6 6.0332 -7.0915 2.6118 28 1 -0.4849 0.8401 -0.0004 29 1 0.3555 -2.3881 0.0047 30 1 2.6846 -3.7185 -0.8794 31 1 2.6846 -3.7107 0.9005 32 1 -0.2736 -3.8761 -1.3849 33 1 0.9522 -4.9279 -2.1328 34 1 -1.2923 -5.9783 -2.2168 35 1 -1.4093 -5.8701 -0.4441 36 1 0.7198 -7.4114 -1.9962 37 1 -0.6721 -8.1298 -1.1511 38 1 1.3732 -8.2446 0.2462 39 1 0.1473 -7.1933 0.9941 40 1 2.2987 -5.5903 2.1426 41 1 4.5203 -7.1136 4.8964 42 1 2.9245 -6.7588 4.1922 43 1 2.8366 -8.9802 3.1673 44 1 4.4886 -9.3367 3.7261 45 1 5.5635 -4.9662 2.0338 46 1 5.6962 -5.2425 3.8525 47 1 6.5400 -7.5981 3.4331 48 1 6.4073 -7.3227 1.6146 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754345629.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:50 Heat of formation + Delta-G solvation = -83.685135 kcal Electronic energy + Delta-G solvation = -27097.070993 eV Core-core repulsion = 23293.927902 eV Total energy + Delta-G solvation = -3803.143091 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -47.82382 -40.49826 -38.73859 -36.82748 -34.64254 -34.12699 -31.92088 -31.49383 -29.72169 -29.31406 -25.42385 -24.62523 -23.39363 -22.97234 -22.57528 -21.49550 -20.65524 -20.14718 -19.10579 -17.43030 -16.99671 -16.43985 -16.20445 -16.05739 -15.32519 -14.99451 -14.81251 -14.72645 -14.29654 -14.18947 -13.86807 -13.72552 -13.27037 -13.07292 -13.03316 -12.76741 -12.55602 -12.35727 -11.86913 -11.84729 -11.74887 -11.54818 -11.12049 -11.09223 -10.91861 -10.90021 -10.75038 -10.72467 -10.45495 -10.30111 -10.20854 -10.09894 -9.96772 -9.71512 -9.61015 -8.95620 -8.85290 -6.93873 -5.79341 -3.07585 2.52538 3.04543 3.41011 3.43708 3.47050 3.49005 4.12078 4.42799 4.47046 4.53133 4.58186 4.70108 4.80369 4.84266 4.86843 4.95081 5.05885 5.15078 5.23883 5.34562 5.42205 5.48920 5.53661 5.56156 5.60953 5.62843 5.66067 5.72440 5.73058 5.75482 5.88254 5.90868 6.09394 6.12833 6.18849 6.23654 6.27132 6.37768 6.54073 6.54160 6.67013 6.76260 6.88160 7.54454 7.68110 8.21719 8.39776 9.51222 10.08905 10.43683 11.43582 Molecular weight = 312.20amu Principal moments of inertia in cm(-1) A = 0.011489 B = 0.003884 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.508812 B = 7207.082393 C = 8745.866394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.159 3.841 11 C -0.100 4.100 12 H 0.075 0.925 13 C -0.107 4.107 14 C -0.122 4.122 15 C -0.115 4.115 16 C -0.126 4.126 17 C 0.155 3.845 18 H 0.086 0.914 19 N -0.713 5.713 20 C 0.550 3.450 21 O -0.540 6.540 22 C -0.164 4.164 23 C -0.107 4.107 24 C 0.063 3.937 25 F -0.219 7.219 26 C -0.150 4.150 27 C -0.145 4.145 28 H 0.254 0.746 29 H 0.384 0.616 30 H 0.017 0.983 31 H 0.019 0.981 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.403 0.597 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.102 0.898 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.423 -17.650 5.607 19.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.032 3.968 11 C -0.119 4.119 12 H 0.093 0.907 13 C -0.145 4.145 14 C -0.159 4.159 15 C -0.153 4.153 16 C -0.165 4.165 17 C 0.050 3.950 18 H 0.104 0.896 19 N -0.363 5.363 20 C 0.335 3.665 21 O -0.417 6.417 22 C -0.168 4.168 23 C -0.145 4.145 24 C 0.008 3.992 25 F -0.200 7.200 26 C -0.187 4.187 27 C -0.182 4.182 28 H 0.064 0.936 29 H 0.218 0.782 30 H 0.035 0.965 31 H 0.036 0.964 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.238 0.762 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.121 0.879 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.775 -18.068 4.973 19.609 hybrid contribution -0.067 1.308 0.423 1.376 sum 5.708 -16.760 5.396 18.509 Atomic orbital electron populations 1.69664 1.05080 1.25513 1.57919 1.24718 0.95498 0.97621 1.03065 0.86145 0.78803 0.84219 0.77204 1.20598 1.21870 1.21879 1.19256 0.91004 0.84188 1.42471 0.91287 1.42368 1.05819 0.99882 1.89437 1.20654 0.93021 0.85359 0.97810 1.21598 0.97730 0.93358 0.99238 0.90687 1.21493 0.97659 0.98863 0.96468 1.21599 0.98078 0.94531 1.01700 1.21484 0.98746 0.97671 0.97362 1.21883 0.97825 0.98469 0.98303 1.21019 0.92696 0.94932 0.86331 0.89610 1.46066 1.27295 1.45580 1.17323 1.19401 0.80449 0.79797 0.86811 1.90690 1.71321 1.38131 1.41519 1.21334 0.92502 1.08021 0.94902 1.21629 1.02177 0.95409 0.95308 1.21954 1.00085 0.94753 0.82450 1.92767 1.89323 1.90455 1.47487 1.23137 0.99839 0.91358 1.04337 1.23035 0.92338 0.98730 1.04122 0.93581 0.78218 0.96514 0.96359 0.90207 0.92074 0.92081 0.92018 0.91931 0.92169 0.91788 0.91923 0.76218 0.89543 0.89833 0.90801 0.90367 0.87732 0.87569 0.87927 0.87622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.69 13.06 55.49 0.72 -26.96 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.90 22.14 29.55 -169.99 -5.02 17.12 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -17.79 5.33 -59.91 -0.32 -18.11 16 10 C 0.16 3.07 5.57 -4.04 -0.02 3.05 16 11 C -0.10 -1.52 1.80 -90.62 -0.16 -1.68 16 12 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 13 C -0.11 -1.60 5.08 -26.73 -0.14 -1.73 16 14 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 15 C -0.11 -1.29 5.92 -26.73 -0.16 -1.45 16 16 C -0.13 -1.51 5.49 -26.75 -0.15 -1.66 16 17 C 0.15 2.08 1.86 -67.95 -0.13 1.95 16 18 H 0.09 1.31 7.66 -51.93 -0.40 0.92 16 19 N -0.71 -8.80 4.30 -53.83 -0.23 -9.03 16 20 C 0.55 7.05 6.53 -10.99 -0.07 6.98 16 21 O -0.54 -8.64 16.36 5.56 0.09 -8.55 16 22 C -0.16 -1.62 1.90 -155.66 -0.30 -1.92 16 23 C -0.11 -0.90 5.54 -26.73 -0.15 -1.05 16 24 C 0.06 0.57 7.36 37.15 0.27 0.84 16 25 F -0.22 -2.41 17.36 2.25 0.04 -2.37 16 26 C -0.15 -1.37 9.93 -26.70 -0.26 -1.64 16 27 C -0.14 -1.30 9.78 -26.69 -0.26 -1.56 16 28 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.38 9.80 6.85 -40.82 -0.28 9.52 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.02 0.35 7.30 -51.93 -0.38 -0.03 16 32 H 0.08 1.39 7.18 -51.93 -0.37 1.02 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.40 4.55 8.40 -40.82 -0.34 4.21 16 41 H 0.09 0.63 8.09 -51.93 -0.42 0.21 16 42 H 0.08 0.69 8.14 -51.92 -0.42 0.26 16 43 H 0.07 0.71 7.87 -51.93 -0.41 0.30 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 47 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.11 1.08 7.99 -51.93 -0.42 0.67 16 LS Contribution 386.87 15.07 5.83 5.83 Total: -1.00 -31.28 386.87 -9.29 -40.58 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -8.48 Total: 10.17 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -1.93 Total: -8.66 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.17 Total: -54.11 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.28 -9.29 -40.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754345629.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.109 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds