Wall clock time and date at job start Tue Mar 31 2020 10:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 120.00055 * 2 1 4 4 H 1.48503 * 109.47323 * 269.99939 * 3 2 1 5 5 H 1.48497 * 109.47222 * 30.00357 * 3 2 1 6 6 H 1.48505 * 109.46913 * 150.00645 * 3 2 1 7 7 C 1.38809 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00075 * 359.97438 * 7 2 1 9 9 N 1.36943 * 119.99960 * 179.97438 * 7 2 1 10 10 C 1.46500 * 119.99734 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46666 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47269 * 55.00423 * 11 10 9 13 13 C 1.53001 * 109.47559 * 295.00018 * 11 10 9 14 14 C 1.53000 * 109.47559 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46583 * 59.99953 * 14 13 11 16 16 C 1.52991 * 109.47556 * 300.00062 * 15 14 13 17 17 C 1.53000 * 109.47226 * 60.00331 * 16 15 14 18 18 H 1.09002 * 109.46844 * 60.00131 * 17 16 15 19 19 N 1.46504 * 109.47302 * 180.02562 * 17 16 15 20 20 C 1.34778 * 120.00071 * 275.00143 * 19 17 16 21 21 O 1.21279 * 119.99712 * 354.93085 * 20 19 17 22 22 C 1.50694 * 119.99929 * 174.93320 * 20 19 17 23 23 C 1.53002 * 115.55249 * 303.25403 * 22 20 19 24 24 C 1.52995 * 109.46978 * 294.75017 * 23 22 20 25 25 F 1.39904 * 109.47060 * 175.91552 * 24 23 22 26 26 C 1.53000 * 117.49858 * 157.58525 * 22 20 19 27 27 C 1.52997 * 117.50005 * 88.92416 * 22 20 19 28 28 H 0.97000 * 119.99605 * 359.97438 * 1 2 3 29 29 H 0.96993 * 119.99764 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.47347 * 60.00070 * 10 9 7 31 31 H 1.08995 * 109.47576 * 299.99617 * 10 9 7 32 32 H 1.09002 * 109.46756 * 59.99960 * 13 11 10 33 33 H 1.09000 * 109.47160 * 300.00471 * 13 11 10 34 34 H 1.08992 * 109.46722 * 300.00138 * 14 13 11 35 35 H 1.08994 * 109.47165 * 180.02562 * 14 13 11 36 36 H 1.09007 * 109.46820 * 179.97438 * 15 14 13 37 37 H 1.09002 * 109.47422 * 60.00487 * 15 14 13 38 38 H 1.09000 * 109.47149 * 300.00071 * 16 15 14 39 39 H 1.09005 * 109.47589 * 180.02562 * 16 15 14 40 40 H 0.97003 * 119.99556 * 94.99591 * 19 17 16 41 41 H 1.09005 * 109.47075 * 54.74455 * 23 22 20 42 42 H 1.09000 * 109.47558 * 174.74806 * 23 22 20 43 43 H 1.08995 * 109.47257 * 295.90852 * 24 23 22 44 44 H 1.08994 * 109.47603 * 55.91327 * 24 23 22 45 45 H 1.09000 * 117.49934 * 0.02562 * 26 22 20 46 46 H 1.09005 * 117.49863 * 145.02005 * 26 22 20 47 47 H 1.08997 * 117.50605 * 214.97956 * 27 22 20 48 48 H 1.09003 * 117.49554 * 359.97438 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3797 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.6163 -2.1915 -0.0024 12 1 5.8665 -1.5453 0.8390 13 6 6.0054 -1.4995 -1.3103 14 6 7.5098 -1.2205 -1.3118 15 6 8.2732 -2.5405 -1.1864 16 6 7.8842 -3.2324 0.1214 17 6 6.3799 -3.5114 0.1230 18 1 6.1293 -4.1575 -0.7184 19 7 6.0072 -4.1735 1.3756 20 6 6.1245 -5.5111 1.4917 21 8 6.4503 -6.1768 0.5317 22 6 5.8507 -6.1796 2.8142 23 6 6.6855 -5.6761 3.9935 24 6 8.1586 -6.0149 3.7570 25 9 8.9330 -5.4736 4.7888 26 6 5.4824 -7.6644 2.7924 27 6 4.4123 -6.6144 3.1016 28 1 -0.4849 0.8401 0.0004 29 1 3.8646 -0.3622 -0.0014 30 1 3.8483 -3.0428 -0.8908 31 1 3.8491 -3.0424 0.8891 32 1 5.4611 -0.5594 -1.3998 33 1 5.7552 -2.1457 -2.1517 34 1 7.7603 -0.5745 -0.4705 35 1 7.7868 -0.7272 -2.2434 36 1 9.3450 -2.3418 -1.1880 37 1 8.0227 -3.1865 -2.0278 38 1 8.1348 -2.5864 0.9628 39 1 8.4285 -4.1726 0.2110 40 1 5.6762 -3.6491 2.1215 41 1 6.5712 -4.5959 4.0845 42 1 6.3450 -6.1561 4.9109 43 1 8.2839 -7.0974 3.7384 44 1 8.4794 -5.5955 2.8035 45 1 5.4385 -8.1579 1.8215 46 1 5.8344 -8.2825 3.6184 47 1 4.0606 -6.5422 4.1308 48 1 3.6639 -6.4166 2.3342 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754345630.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:52 Heat of formation + Delta-G solvation = -79.205621 kcal Electronic energy + Delta-G solvation = -27217.393316 eV Core-core repulsion = 23414.444471 eV Total energy + Delta-G solvation = -3802.948845 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -47.85675 -40.55973 -38.84756 -36.85900 -34.83847 -34.22005 -31.98818 -31.51243 -30.08246 -29.54327 -25.66227 -24.69741 -23.46964 -22.73293 -22.55178 -21.51987 -20.75410 -20.23412 -19.19024 -17.74669 -17.21468 -16.50638 -16.28534 -16.08512 -15.29675 -15.02847 -14.93783 -14.69902 -14.40419 -14.32703 -14.02115 -13.77892 -13.45077 -13.08028 -12.92318 -12.82233 -12.71919 -12.45948 -12.08760 -11.89073 -11.78730 -11.71923 -11.26569 -11.12555 -11.09269 -11.00844 -10.84520 -10.76205 -10.54119 -10.41628 -10.29596 -10.11379 -10.07215 -9.72722 -9.60143 -9.00587 -8.88876 -7.25083 -5.79076 -3.14550 2.46416 3.01606 3.33976 3.36631 3.42148 3.42631 4.09132 4.38751 4.43938 4.50247 4.56398 4.64997 4.65768 4.77214 4.80463 4.87680 4.94345 5.08817 5.13622 5.22344 5.39765 5.43238 5.44484 5.48829 5.50697 5.52864 5.57778 5.59630 5.70441 5.71273 5.73544 5.80540 5.89876 5.99713 6.05022 6.10879 6.14632 6.22944 6.40790 6.44864 6.49320 6.63847 6.76937 7.48813 7.97254 8.17787 8.39954 9.19054 9.91295 10.11205 11.39480 Molecular weight = 312.20amu Principal moments of inertia in cm(-1) A = 0.012519 B = 0.003957 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.144398 B = 7074.851371 C = 8174.003623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.243 4.243 8 H 0.089 0.911 9 N -0.754 5.754 10 C 0.163 3.837 11 C -0.104 4.104 12 H 0.074 0.926 13 C -0.109 4.109 14 C -0.122 4.122 15 C -0.114 4.114 16 C -0.126 4.126 17 C 0.154 3.846 18 H 0.090 0.910 19 N -0.715 5.715 20 C 0.551 3.449 21 O -0.539 6.539 22 C -0.166 4.166 23 C -0.108 4.108 24 C 0.063 3.937 25 F -0.219 7.219 26 C -0.144 4.144 27 C -0.148 4.148 28 H 0.259 0.741 29 H 0.360 0.640 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.403 0.597 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.107 0.893 46 H 0.102 0.898 47 H 0.106 0.894 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.061 -11.352 5.986 22.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.400 5.400 10 C 0.036 3.964 11 C -0.124 4.124 12 H 0.093 0.907 13 C -0.147 4.147 14 C -0.160 4.160 15 C -0.153 4.153 16 C -0.165 4.165 17 C 0.049 3.951 18 H 0.108 0.892 19 N -0.364 5.364 20 C 0.337 3.663 21 O -0.416 6.416 22 C -0.170 4.170 23 C -0.146 4.146 24 C 0.008 3.992 25 F -0.200 7.200 26 C -0.181 4.181 27 C -0.185 4.185 28 H 0.069 0.931 29 H 0.193 0.807 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.238 0.762 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.126 0.874 46 H 0.121 0.879 47 H 0.125 0.875 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 18.084 -11.891 5.313 22.286 hybrid contribution 0.321 1.614 0.438 1.703 sum 18.405 -10.277 5.750 21.850 Atomic orbital electron populations 1.69705 1.05108 1.25801 1.57618 1.24663 0.95212 0.97144 1.02076 0.86566 0.79184 0.85066 0.77811 1.21042 1.21726 1.20384 1.19049 0.80661 0.94680 1.42936 0.89337 1.42713 1.03993 1.02140 1.91165 1.20634 0.87789 0.89240 0.98715 1.21646 0.96529 0.95106 0.99079 0.90743 1.21515 0.94966 1.01343 0.96862 1.21601 0.95618 0.97020 1.01734 1.21474 0.99520 0.96841 0.97415 1.21903 0.95671 1.00562 0.98355 1.21003 0.93564 0.93714 0.86826 0.89153 1.46036 1.66249 1.07027 1.17135 1.19390 0.76566 0.82132 0.88255 1.90693 1.47522 1.64032 1.39323 1.21359 1.00999 0.99895 0.94701 1.21633 0.93395 1.02958 0.96567 1.21946 0.89447 0.99382 0.88434 1.92771 1.76928 1.88294 1.61984 1.23044 1.01435 0.89501 1.04170 1.23128 0.89933 1.01697 1.03775 0.93061 0.80651 0.95553 0.95543 0.90937 0.91552 0.92070 0.91962 0.92044 0.91756 0.91841 0.91892 0.76199 0.89777 0.89595 0.90441 0.90865 0.87436 0.87931 0.87539 0.87700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.20 13.97 55.49 0.78 -28.43 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.88 21.80 27.73 -169.99 -4.71 17.08 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 7 C -0.24 -6.81 10.47 -15.06 -0.16 -6.97 16 8 H 0.09 2.68 8.06 -52.48 -0.42 2.25 16 9 N -0.75 -17.37 5.13 -59.91 -0.31 -17.68 16 10 C 0.16 3.04 5.56 -4.04 -0.02 3.02 16 11 C -0.10 -1.49 1.80 -90.62 -0.16 -1.65 16 12 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 13 C -0.11 -1.50 5.08 -26.73 -0.14 -1.64 16 14 C -0.12 -1.36 5.92 -26.73 -0.16 -1.52 16 15 C -0.11 -1.19 5.92 -26.74 -0.16 -1.35 16 16 C -0.13 -1.40 5.49 -26.74 -0.15 -1.54 16 17 C 0.15 1.95 1.94 -67.93 -0.13 1.82 16 18 H 0.09 1.33 7.51 -51.93 -0.39 0.94 16 19 N -0.71 -8.46 4.28 -53.80 -0.23 -8.69 16 20 C 0.55 6.89 6.43 -10.99 -0.07 6.82 16 21 O -0.54 -8.53 16.13 5.56 0.09 -8.44 16 22 C -0.17 -1.58 1.91 -155.66 -0.30 -1.88 16 23 C -0.11 -0.86 5.53 -26.73 -0.15 -1.01 16 24 C 0.06 0.54 7.47 37.16 0.28 0.82 16 25 F -0.22 -2.34 17.36 2.25 0.04 -2.30 16 26 C -0.14 -1.25 9.76 -26.69 -0.26 -1.51 16 27 C -0.15 -1.31 9.93 -26.69 -0.26 -1.58 16 28 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 29 H 0.36 8.07 4.71 -40.82 -0.19 7.88 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.03 0.50 7.30 -51.93 -0.38 0.12 16 32 H 0.07 1.13 7.18 -51.93 -0.37 0.75 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.40 4.33 8.23 -40.82 -0.34 3.99 16 41 H 0.08 0.66 7.98 -51.93 -0.41 0.25 16 42 H 0.09 0.58 8.09 -51.93 -0.42 0.16 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.68 7.59 -51.93 -0.39 0.28 16 45 H 0.11 1.08 7.85 -51.93 -0.41 0.67 16 46 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 382.73 15.07 5.77 5.77 Total: -1.00 -32.64 382.73 -8.91 -41.55 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -8.39 Total: 9.26 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -1.93 Total: -8.12 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: 0.24 Total: -54.79 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.08 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.64 -8.91 -41.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754345630.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.659 kcal (2) G-P(sol) polarization free energy of solvation -32.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds