Wall clock time and date at job start Tue Mar 31 2020 10:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99679 * 2 1 4 4 H 1.48493 * 109.47312 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47358 * 300.00247 * 3 2 1 6 6 H 1.48506 * 109.47222 * 60.00407 * 3 2 1 7 7 C 1.38814 * 120.00559 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99928 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99478 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99763 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47105 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47497 * 54.99654 * 11 10 9 13 13 C 1.53004 * 109.46905 * 294.99615 * 11 10 9 14 14 C 1.52995 * 109.46905 * 179.97438 * 13 11 10 15 15 C 1.53007 * 109.47116 * 60.00437 * 14 13 11 16 16 C 1.52997 * 109.46874 * 299.99299 * 15 14 13 17 17 C 1.53003 * 109.46850 * 60.00575 * 16 15 14 18 18 H 1.08995 * 109.47395 * 179.97438 * 17 16 15 19 19 N 1.46499 * 109.47304 * 59.99431 * 17 16 15 20 20 C 1.34774 * 119.99872 * 85.00628 * 19 17 16 21 21 O 1.21281 * 120.00119 * 354.99421 * 20 19 17 22 22 C 1.50700 * 120.00195 * 175.00565 * 20 19 17 23 23 C 1.52999 * 115.54879 * 279.30674 * 22 20 19 24 24 C 1.53004 * 109.47065 * 294.73311 * 23 22 20 25 25 F 1.39895 * 109.47324 * 175.69997 * 24 23 22 26 26 C 1.52999 * 117.50009 * 133.59273 * 22 20 19 27 27 C 1.53001 * 60.00178 * 252.51092 * 26 22 20 28 28 H 0.96995 * 120.00748 * 359.97438 * 1 2 3 29 29 H 0.96996 * 119.99837 * 359.97438 * 9 7 2 30 30 H 1.08995 * 109.47039 * 59.99597 * 10 9 7 31 31 H 1.09009 * 109.46874 * 300.00006 * 10 9 7 32 32 H 1.09002 * 109.47075 * 300.00297 * 13 11 10 33 33 H 1.08996 * 109.46844 * 60.00099 * 13 11 10 34 34 H 1.09003 * 109.47542 * 180.02562 * 14 13 11 35 35 H 1.08998 * 109.47852 * 300.00380 * 14 13 11 36 36 H 1.08999 * 109.47192 * 59.99976 * 15 14 13 37 37 H 1.09004 * 109.46657 * 179.97438 * 15 14 13 38 38 H 1.08999 * 109.47764 * 300.00327 * 16 15 14 39 39 H 1.08998 * 109.47191 * 179.97438 * 16 15 14 40 40 H 0.96997 * 120.00004 * 265.00002 * 19 17 16 41 41 H 1.09004 * 109.47346 * 54.72811 * 23 22 20 42 42 H 1.08996 * 109.47497 * 174.73256 * 23 22 20 43 43 H 1.09008 * 109.47038 * 295.70615 * 24 23 22 44 44 H 1.09003 * 109.47059 * 55.69881 * 24 23 22 45 45 H 1.08993 * 117.50064 * 0.02562 * 26 22 20 46 46 H 1.09005 * 117.49129 * 145.02361 * 26 22 20 47 47 H 1.09005 * 117.50095 * 252.51354 * 27 26 22 48 48 H 1.08999 * 117.49838 * 107.49160 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7100 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0027 11 6 1.0641 -4.8197 -0.0044 12 1 0.3802 -4.7119 -0.8463 13 6 0.2689 -4.8126 1.3027 14 6 -0.7257 -5.9752 1.3008 15 6 0.0347 -7.2968 1.1736 16 6 0.8298 -7.3038 -0.1336 17 6 1.8245 -6.1413 -0.1316 18 1 2.3913 -6.1465 -1.0626 19 7 2.7436 -6.2867 0.9999 20 6 3.8427 -7.0574 0.8805 21 8 4.0244 -7.7022 -0.1305 22 6 4.8460 -7.1182 2.0034 23 6 5.8367 -5.9540 2.0669 24 6 6.7342 -5.9799 0.8279 25 9 7.5737 -4.8609 0.8367 26 6 5.3503 -8.4995 2.4262 27 6 4.3862 -7.7276 3.3294 28 1 -0.4851 0.8399 0.0004 29 1 0.3557 -2.3880 -0.0016 30 1 2.6849 -3.7152 0.8871 31 1 2.6849 -3.7136 -0.8929 32 1 0.9527 -4.9204 2.1446 33 1 -0.2732 -3.8714 1.3931 34 1 -1.2926 -5.9700 2.2318 35 1 -1.4096 -5.8671 0.4589 36 1 0.7185 -7.4050 2.0155 37 1 -0.6739 -8.1250 1.1726 38 1 0.1461 -7.1956 -0.9755 39 1 1.3720 -8.2451 -0.2240 40 1 2.5610 -5.8283 1.8350 41 1 5.2890 -5.0121 2.0990 42 1 6.4509 -6.0479 2.9624 43 1 7.3381 -6.8874 0.8357 44 1 6.1155 -5.9629 -0.0693 45 1 4.9567 -9.3641 1.8920 46 1 6.3882 -8.5789 2.7495 47 1 4.7899 -7.2993 4.2469 48 1 3.3581 -8.0846 3.3896 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754345631.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:54 Heat of formation + Delta-G solvation = -80.311187 kcal Electronic energy + Delta-G solvation = -27490.324524 eV Core-core repulsion = 23687.327738 eV Total energy + Delta-G solvation = -3802.996786 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -47.62285 -40.62866 -38.82224 -36.83425 -34.66279 -33.60377 -31.92520 -31.41862 -29.93980 -29.44525 -25.41595 -24.59349 -23.29481 -22.95854 -22.64715 -22.01093 -20.71618 -19.77308 -18.94088 -17.43352 -16.98620 -16.33025 -16.09731 -15.72644 -15.29811 -15.25105 -14.73111 -14.66365 -14.57974 -14.22801 -13.73824 -13.63368 -13.25061 -13.07625 -12.88990 -12.79278 -12.55582 -12.12253 -12.01392 -11.87745 -11.74398 -11.66529 -11.43361 -10.94563 -10.90816 -10.89122 -10.76000 -10.74742 -10.40484 -10.25824 -10.18695 -9.98468 -9.87064 -9.72413 -9.62119 -8.94862 -8.84504 -6.92054 -5.77221 -3.05471 2.55485 3.05193 3.36361 3.43391 3.49964 3.51756 4.14520 4.41796 4.51724 4.56635 4.62502 4.79576 4.82299 4.86888 4.90673 4.92380 5.05573 5.20035 5.23890 5.30529 5.32032 5.52590 5.56094 5.58670 5.60151 5.63042 5.66376 5.68493 5.73048 5.78869 5.80941 5.90127 6.03017 6.12666 6.14178 6.22250 6.25470 6.35951 6.46516 6.57428 6.66272 6.78982 6.85894 7.55464 7.71292 8.22478 8.41873 9.53484 10.10759 10.45508 11.45687 Molecular weight = 312.20amu Principal moments of inertia in cm(-1) A = 0.010563 B = 0.004581 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.235388 B = 6110.356550 C = 8092.683171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.730 5.730 10 C 0.160 3.840 11 C -0.102 4.102 12 H 0.085 0.915 13 C -0.110 4.110 14 C -0.121 4.121 15 C -0.115 4.115 16 C -0.128 4.128 17 C 0.155 3.845 18 H 0.086 0.914 19 N -0.707 5.707 20 C 0.549 3.451 21 O -0.539 6.539 22 C -0.157 4.157 23 C -0.107 4.107 24 C 0.063 3.937 25 F -0.218 7.218 26 C -0.145 4.145 27 C -0.159 4.159 28 H 0.254 0.746 29 H 0.384 0.616 30 H 0.018 0.982 31 H 0.017 0.983 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.402 0.598 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.105 0.895 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.686 -19.190 6.864 21.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.033 3.967 11 C -0.121 4.121 12 H 0.104 0.896 13 C -0.148 4.148 14 C -0.158 4.158 15 C -0.152 4.152 16 C -0.166 4.166 17 C 0.050 3.950 18 H 0.104 0.896 19 N -0.359 5.359 20 C 0.334 3.666 21 O -0.416 6.416 22 C -0.161 4.161 23 C -0.145 4.145 24 C 0.008 3.992 25 F -0.199 7.199 26 C -0.182 4.182 27 C -0.196 4.196 28 H 0.064 0.936 29 H 0.218 0.782 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.238 0.762 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.124 0.876 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.970 -19.476 6.111 21.268 hybrid contribution 0.050 1.310 0.383 1.365 sum 6.020 -18.167 6.494 20.210 Atomic orbital electron populations 1.69658 1.05080 1.25509 1.58003 1.24711 0.95495 0.97623 1.03064 0.86147 0.78884 0.84199 0.77181 1.20541 1.21875 1.21883 1.19267 0.91047 0.84176 1.42382 0.91240 1.42367 1.05809 0.99893 1.89428 1.20634 0.92970 0.85354 0.97773 1.21636 0.97844 0.93372 0.99263 0.89629 1.21527 0.97645 0.99004 0.96589 1.21587 0.98060 0.94506 1.01688 1.21484 0.98577 0.97520 0.97650 1.21896 0.97887 0.98578 0.98288 1.20989 0.89825 0.94592 0.89590 0.89586 1.46099 1.23578 1.49145 1.17049 1.19405 0.81151 0.78944 0.87075 1.90692 1.76664 1.43522 1.30767 1.21332 1.00508 0.97278 0.96938 1.21618 0.96387 0.97549 0.98973 1.21926 0.91732 0.85807 0.99715 1.92776 1.73654 1.55599 1.97850 1.23005 1.00089 0.93367 1.01768 1.23127 1.00669 1.02730 0.93048 0.93601 0.78222 0.96443 0.96536 0.92714 0.90241 0.92269 0.91891 0.92402 0.92517 0.91042 0.91730 0.76154 0.89374 0.89718 0.90649 0.90436 0.87944 0.87822 0.87632 0.88120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.90 22.48 29.55 -169.99 -5.02 17.46 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -17.98 5.33 -59.91 -0.32 -18.30 16 10 C 0.16 3.12 5.42 -4.05 -0.02 3.09 16 11 C -0.10 -1.54 2.02 -90.62 -0.18 -1.72 16 12 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 13 C -0.11 -1.53 4.90 -26.73 -0.13 -1.67 16 14 C -0.12 -1.39 5.92 -26.73 -0.16 -1.55 16 15 C -0.11 -1.20 5.77 -26.73 -0.15 -1.36 16 16 C -0.13 -1.49 5.60 -26.73 -0.15 -1.64 16 17 C 0.15 2.05 2.19 -67.93 -0.15 1.90 16 18 H 0.09 1.29 7.65 -51.93 -0.40 0.90 16 19 N -0.71 -8.53 3.62 -53.80 -0.19 -8.73 16 20 C 0.55 6.93 6.26 -10.99 -0.07 6.86 16 21 O -0.54 -8.54 16.68 5.56 0.09 -8.45 16 22 C -0.16 -1.52 1.87 -155.66 -0.29 -1.81 16 23 C -0.11 -1.06 5.54 -26.73 -0.15 -1.21 16 24 C 0.06 0.71 7.48 37.16 0.28 0.99 16 25 F -0.22 -3.02 17.36 2.25 0.04 -2.98 16 26 C -0.14 -1.16 9.88 -26.73 -0.26 -1.43 16 27 C -0.16 -1.17 9.92 -26.73 -0.27 -1.44 16 28 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.38 9.86 6.85 -40.82 -0.28 9.58 16 30 H 0.02 0.34 7.61 -51.93 -0.40 -0.05 16 31 H 0.02 0.35 8.14 -51.92 -0.42 -0.07 16 32 H 0.05 0.72 6.51 -51.93 -0.34 0.38 16 33 H 0.08 1.34 7.18 -51.93 -0.37 0.96 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.59 7.60 -51.93 -0.39 0.19 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 40 H 0.40 4.49 6.67 -40.82 -0.27 4.22 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 43 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 44 H 0.08 0.99 7.58 -51.93 -0.39 0.59 16 45 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 382.87 15.07 5.77 5.77 Total: -1.00 -31.70 382.87 -9.17 -40.87 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -8.30 Total: 9.76 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -1.95 Total: -8.20 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.21 Total: -54.24 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.45 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.04 Total: -2.98 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.70 -9.17 -40.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754345631.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.442 kcal (2) G-P(sol) polarization free energy of solvation -31.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds