Wall clock time and date at job start Tue Mar 31 2020 10:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47325 * 2 1 4 4 C 1.50702 * 109.47118 * 239.99465 * 2 1 3 5 5 H 1.07992 * 120.00241 * 243.73926 * 4 2 1 6 6 C 1.37877 * 119.99860 * 63.73905 * 4 2 1 7 7 N 1.31513 * 120.00255 * 191.04456 * 6 4 2 8 8 Si 1.86803 * 120.00062 * 11.04619 * 6 4 2 9 9 H 1.48501 * 109.47000 * 86.33321 * 8 6 4 10 10 H 1.48488 * 109.47295 * 206.33519 * 8 6 4 11 11 H 1.48506 * 109.47112 * 326.33882 * 8 6 4 12 12 C 1.53006 * 109.47089 * 119.99852 * 2 1 3 13 13 N 1.46498 * 109.46796 * 300.00171 * 12 2 1 14 14 C 1.34777 * 120.00039 * 180.02562 * 13 12 2 15 15 O 1.21594 * 119.99706 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00249 * 179.72035 * 14 13 12 17 17 C 1.47416 * 125.64699 * 355.20590 * 16 14 13 18 18 C 1.54914 * 104.83265 * 204.08954 * 17 16 14 19 19 C 1.55159 * 101.58115 * 322.99044 * 18 17 16 20 20 C 1.47027 * 125.64899 * 174.89529 * 16 14 13 21 21 C 1.53003 * 109.87861 * 59.55839 * 20 16 14 22 22 C 1.53002 * 109.87931 * 298.39809 * 20 16 14 23 23 C 1.52992 * 109.47134 * 306.05025 * 22 20 16 24 24 C 1.52996 * 109.47142 * 183.71023 * 23 22 20 25 25 O 1.42903 * 109.47495 * 179.97438 * 24 23 22 26 26 H 1.08998 * 109.47117 * 310.35084 * 1 2 3 27 27 H 1.09006 * 109.47065 * 70.34688 * 1 2 3 28 28 H 1.08996 * 109.47732 * 190.34859 * 1 2 3 29 29 H 1.09003 * 109.47545 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47115 * 299.99708 * 3 2 1 31 31 H 1.08999 * 109.47161 * 59.99810 * 3 2 1 32 32 H 0.96993 * 119.99961 * 180.02562 * 7 6 4 33 33 H 1.08994 * 109.47061 * 180.02562 * 12 2 1 34 34 H 1.09001 * 109.46788 * 59.99346 * 12 2 1 35 35 H 0.96998 * 120.00626 * 359.97438 * 13 12 2 36 36 H 1.08996 * 110.37144 * 322.92877 * 17 16 14 37 37 H 1.09001 * 110.36730 * 85.14191 * 17 16 14 38 38 H 1.08997 * 111.00323 * 81.06246 * 18 17 16 39 39 H 1.09001 * 111.00388 * 204.91850 * 18 17 16 40 40 H 1.09005 * 110.72083 * 153.86047 * 19 18 17 41 41 H 1.09001 * 110.71819 * 277.13757 * 19 18 17 42 42 H 1.09004 * 109.46949 * 58.55035 * 21 20 16 43 43 H 1.09002 * 109.46549 * 178.54548 * 21 20 16 44 44 H 1.08996 * 109.47538 * 298.54720 * 21 20 16 45 45 H 1.08992 * 109.47328 * 66.05554 * 22 20 16 46 46 H 1.09003 * 109.46408 * 186.05142 * 22 20 16 47 47 H 1.09007 * 109.47388 * 303.70623 * 23 22 20 48 48 H 1.08998 * 109.47650 * 63.70826 * 23 22 20 49 49 H 1.09001 * 109.47327 * 300.00112 * 24 23 22 50 50 H 1.09007 * 109.47410 * 59.99852 * 24 23 22 51 51 H 0.96697 * 114.00142 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6024 -1.6224 -1.1324 6 6 1.7639 -0.1963 -2.4812 7 7 2.0073 -0.9165 -3.5544 8 14 1.0547 1.5234 -2.6517 9 1 2.1599 2.5152 -2.6684 10 1 0.2853 1.6183 -3.9181 11 1 0.1553 1.8040 -1.5038 12 6 2.0399 -0.7212 1.2493 13 7 1.5515 -0.0306 2.4454 14 6 1.8775 -0.4907 3.6696 15 8 2.5766 -1.4793 3.7812 16 7 1.4329 0.1480 4.7700 17 6 0.6706 1.4097 4.7819 18 6 0.9402 2.0227 6.1788 19 6 0.9722 0.7558 7.0740 20 6 1.6221 -0.3016 6.1569 21 6 3.1160 -0.4102 6.4694 22 6 0.9450 -1.6584 6.3610 23 6 -0.5196 -1.5677 5.9279 24 6 -1.2204 -2.8964 6.2179 25 8 -2.5885 -2.8115 5.8139 26 1 -0.3633 0.6654 0.7832 27 1 -0.3633 0.3456 -0.9679 28 1 -0.3634 -1.0109 0.1846 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.8189 -0.5546 -4.4343 33 1 3.1299 -0.7208 1.2495 34 1 1.6765 -1.7489 1.2493 35 1 0.9942 0.7583 2.3564 36 1 1.0299 2.0775 3.9989 37 1 -0.3933 1.2115 4.6517 38 1 1.8993 2.5402 6.1999 39 1 0.1312 2.6903 6.4753 40 1 1.5811 0.9262 7.9619 41 1 -0.0379 0.4531 7.3501 42 1 3.5908 0.5588 6.3151 43 1 3.2487 -0.7189 7.5063 44 1 3.5726 -1.1477 5.8094 45 1 1.4549 -2.4128 5.7621 46 1 0.9960 -1.9350 7.4141 47 1 -1.0132 -0.7683 6.4808 48 1 -0.5703 -1.3557 4.8600 49 1 -0.7269 -3.6957 5.6651 50 1 -1.1698 -3.1084 7.2860 51 1 -3.0951 -3.6206 5.9683 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459238708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:14 Heat of formation + Delta-G solvation = -72.769226 kcal Electronic energy + Delta-G solvation = -28303.093276 eV Core-core repulsion = 24623.883839 eV Total energy + Delta-G solvation = -3679.209437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.65508 -38.28950 -37.08532 -36.47153 -34.02614 -32.99276 -31.78653 -31.05927 -30.83321 -26.39636 -26.31828 -25.92477 -25.34790 -24.74689 -22.52334 -21.73418 -20.84562 -19.30536 -18.74199 -17.72256 -17.08490 -16.29090 -16.07786 -15.80695 -15.47635 -15.11586 -14.74035 -14.24945 -14.11814 -13.86541 -13.57265 -13.20768 -13.16364 -13.03074 -12.94111 -12.67373 -12.51945 -12.35460 -12.20158 -12.03541 -11.94570 -11.55218 -11.37568 -11.33570 -11.19499 -11.01146 -10.72663 -10.55419 -10.38566 -10.25514 -10.13678 -10.08640 -10.04444 -9.59934 -9.07252 -8.67142 -8.64836 -8.48853 -8.19817 -6.11522 -4.09863 2.86777 3.25809 3.32448 3.40255 3.58398 3.99546 4.23133 4.37449 4.39314 4.58995 4.67859 4.86662 4.91259 5.01354 5.15279 5.19530 5.22414 5.28991 5.35647 5.46090 5.50386 5.54832 5.64374 5.69879 5.75903 5.78018 5.78557 5.91209 6.02878 6.06965 6.11253 6.13823 6.24244 6.30392 6.38249 6.46524 6.56712 6.60191 6.68411 6.73379 6.87646 7.05448 7.25425 7.38448 7.45296 7.46569 7.75172 8.35559 8.49964 8.92904 9.02152 9.51655 11.01671 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.016299 B = 0.003764 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.466341 B = 7437.484438 C = 7980.001016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.028 3.972 3 C -0.145 4.145 4 C -0.509 4.509 5 H 0.077 0.923 6 C 0.074 3.926 7 N -0.894 5.894 8 Si 0.888 3.112 9 H -0.287 1.287 10 H -0.306 1.306 11 H -0.250 1.250 12 C 0.161 3.839 13 N -0.737 5.737 14 C 0.720 3.280 15 O -0.590 6.590 16 N -0.632 5.632 17 C 0.098 3.902 18 C -0.129 4.129 19 C -0.128 4.128 20 C 0.187 3.813 21 C -0.157 4.157 22 C -0.123 4.123 23 C -0.114 4.114 24 C 0.076 3.924 25 O -0.575 6.575 26 H 0.020 0.980 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.040 0.960 31 H 0.028 0.972 32 H 0.264 0.736 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.391 0.609 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.071 0.929 49 H 0.045 0.955 50 H 0.042 0.958 51 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.668 4.208 23.856 24.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.027 3.973 3 C -0.202 4.202 4 C -0.547 4.547 5 H 0.095 0.905 6 C -0.128 4.128 7 N -0.531 5.531 8 Si 0.722 3.278 9 H -0.215 1.215 10 H -0.235 1.235 11 H -0.176 1.176 12 C 0.039 3.961 13 N -0.392 5.392 14 C 0.422 3.578 15 O -0.468 6.468 16 N -0.371 5.371 17 C -0.026 4.026 18 C -0.167 4.167 19 C -0.166 4.166 20 C 0.102 3.898 21 C -0.215 4.215 22 C -0.161 4.161 23 C -0.152 4.152 24 C -0.002 4.002 25 O -0.380 6.380 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.225 0.775 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.064 0.936 50 H 0.060 0.940 51 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -4.908 3.993 23.438 24.277 hybrid contribution -0.750 0.815 -0.245 1.134 sum -5.658 4.808 23.193 24.352 Atomic orbital electron populations 1.22265 0.97872 0.99711 0.99830 1.18739 0.92503 0.92259 0.93848 1.22343 1.01177 0.98314 0.98380 1.20728 1.35492 1.10524 0.88001 0.90511 1.24979 0.94743 0.97381 0.95718 1.69927 1.48505 1.36485 0.98171 0.87228 0.79408 0.85373 0.75832 1.21499 1.23489 1.17577 1.21357 0.98266 0.95391 0.81129 1.45545 1.55854 1.33133 1.04672 1.15518 0.80110 0.82501 0.79698 1.90862 1.42638 1.27843 1.85456 1.47669 1.59507 1.25229 1.04719 1.22248 0.96312 0.85839 0.98186 1.22715 1.02629 0.97133 0.94255 1.22825 1.01664 0.94381 0.97729 1.20685 0.95330 0.93394 0.80418 1.22172 0.94892 1.02925 1.01504 1.21843 0.94849 0.97945 1.01471 1.21476 0.94457 0.96280 1.02938 1.22219 0.81958 0.98409 0.97625 1.86490 1.22691 1.41484 1.87382 0.96094 0.92631 0.93460 0.92788 0.94145 0.95314 0.92595 0.92276 0.92195 0.77467 0.91071 0.91654 0.90639 0.90049 0.90086 0.90197 0.92711 0.92352 0.90337 0.90072 0.91361 0.91473 0.91073 0.93631 0.94021 0.77643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 7.51 37.15 0.28 -2.63 16 2 C 0.03 0.62 0.50 -155.66 -0.08 0.54 16 3 C -0.15 -3.00 7.47 37.15 0.28 -2.73 16 4 C -0.51 -13.86 8.62 -34.44 -0.30 -14.15 16 5 H 0.08 2.29 7.99 -52.49 -0.42 1.88 16 6 C 0.07 2.08 5.36 -17.82 -0.10 1.98 16 7 N -0.89 -26.98 13.96 55.43 0.77 -26.21 16 8 Si 0.89 21.39 22.75 -169.99 -3.87 17.52 16 9 H -0.29 -6.88 7.10 56.52 0.40 -6.48 16 10 H -0.31 -7.54 7.11 56.52 0.40 -7.13 16 11 H -0.25 -5.48 4.62 56.52 0.26 -5.22 16 12 C 0.16 3.35 4.48 -4.04 -0.02 3.33 16 13 N -0.74 -12.83 4.96 -65.22 -0.32 -13.15 16 14 C 0.72 12.43 7.94 -86.92 -0.69 11.74 16 15 O -0.59 -12.11 14.05 5.28 0.07 -12.04 16 16 N -0.63 -8.27 1.92 -161.44 -0.31 -8.57 16 17 C 0.10 0.99 6.47 -2.53 -0.02 0.97 16 18 C -0.13 -0.99 7.09 -24.58 -0.17 -1.16 16 19 C -0.13 -1.01 5.84 -24.89 -0.15 -1.15 16 20 C 0.19 2.05 0.54 -130.83 -0.07 1.98 16 21 C -0.16 -1.78 8.36 37.16 0.31 -1.47 16 22 C -0.12 -1.35 4.14 -26.73 -0.11 -1.47 16 23 C -0.11 -1.30 5.15 -26.74 -0.14 -1.43 16 24 C 0.08 0.79 7.05 37.16 0.26 1.05 16 25 O -0.58 -6.41 13.66 -35.23 -0.48 -6.89 16 26 H 0.02 0.37 7.15 -51.93 -0.37 -0.01 16 27 H 0.05 1.23 4.42 -51.93 -0.23 1.00 16 28 H 0.05 0.98 8.11 -51.93 -0.42 0.56 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.04 0.88 2.13 -51.93 -0.11 0.77 16 31 H 0.03 0.49 6.86 -51.93 -0.36 0.14 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.39 6.08 4.87 -40.82 -0.20 5.88 16 36 H 0.07 0.71 7.49 -51.93 -0.39 0.32 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.53 7.83 -51.93 -0.41 0.12 16 41 H 0.08 0.59 5.98 -51.93 -0.31 0.28 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.08 1.14 6.59 -51.93 -0.34 0.80 16 45 H 0.08 1.13 7.20 -51.93 -0.37 0.76 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.70 6.21 -51.92 -0.32 0.38 16 48 H 0.07 1.02 7.50 -51.93 -0.39 0.63 16 49 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.38 2.41 9.12 45.56 0.42 2.83 16 LS Contribution 373.96 15.07 5.64 5.64 Total: -1.00 -32.86 373.96 -7.36 -40.22 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -8.15 Total: 8.08 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -0.70 Total: -4.60 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.14 Total: -47.93 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.41 Total: -18.93 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -3.87 Total: 17.52 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.86 -7.36 -40.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459238708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.551 kcal (2) G-P(sol) polarization free energy of solvation -32.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds