Wall clock time and date at job start Tue Mar 31 2020 10:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47325 * 2 1 4 4 C 1.50702 * 109.47118 * 239.99465 * 2 1 3 5 5 H 1.07992 * 120.00241 * 243.73926 * 4 2 1 6 6 C 1.37877 * 119.99860 * 63.73905 * 4 2 1 7 7 N 1.31513 * 120.00255 * 191.04456 * 6 4 2 8 8 Si 1.86803 * 120.00062 * 11.04619 * 6 4 2 9 9 H 1.48501 * 109.47000 * 86.33321 * 8 6 4 10 10 H 1.48488 * 109.47295 * 206.33519 * 8 6 4 11 11 H 1.48506 * 109.47112 * 326.33882 * 8 6 4 12 12 C 1.53006 * 109.47089 * 119.99852 * 2 1 3 13 13 N 1.46498 * 109.46796 * 300.00171 * 12 2 1 14 14 C 1.34777 * 120.00039 * 180.02562 * 13 12 2 15 15 O 1.21594 * 119.99706 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00249 * 179.72035 * 14 13 12 17 17 C 1.47416 * 125.64699 * 355.20590 * 16 14 13 18 18 C 1.54914 * 104.83265 * 204.08954 * 17 16 14 19 19 C 1.55159 * 101.58115 * 322.99044 * 18 17 16 20 20 C 1.47027 * 125.64899 * 174.89529 * 16 14 13 21 21 C 1.53003 * 109.87861 * 59.55839 * 20 16 14 22 22 C 1.53002 * 109.87931 * 298.39809 * 20 16 14 23 23 C 1.52992 * 109.47134 * 306.05025 * 22 20 16 24 24 C 1.52996 * 109.47142 * 183.71023 * 23 22 20 25 25 O 1.42903 * 109.47495 * 179.97438 * 24 23 22 26 26 H 1.08998 * 109.47117 * 310.35084 * 1 2 3 27 27 H 1.09006 * 109.47065 * 70.34688 * 1 2 3 28 28 H 1.08996 * 109.47732 * 190.34859 * 1 2 3 29 29 H 1.09003 * 109.47545 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47115 * 299.99708 * 3 2 1 31 31 H 1.08999 * 109.47161 * 59.99810 * 3 2 1 32 32 H 0.96993 * 119.99961 * 180.02562 * 7 6 4 33 33 H 1.08994 * 109.47061 * 180.02562 * 12 2 1 34 34 H 1.09001 * 109.46788 * 59.99346 * 12 2 1 35 35 H 0.96998 * 120.00626 * 359.97438 * 13 12 2 36 36 H 1.08996 * 110.37144 * 322.92877 * 17 16 14 37 37 H 1.09001 * 110.36730 * 85.14191 * 17 16 14 38 38 H 1.08997 * 111.00323 * 81.06246 * 18 17 16 39 39 H 1.09001 * 111.00388 * 204.91850 * 18 17 16 40 40 H 1.09005 * 110.72083 * 153.86047 * 19 18 17 41 41 H 1.09001 * 110.71819 * 277.13757 * 19 18 17 42 42 H 1.09004 * 109.46949 * 58.55035 * 21 20 16 43 43 H 1.09002 * 109.46549 * 178.54548 * 21 20 16 44 44 H 1.08996 * 109.47538 * 298.54720 * 21 20 16 45 45 H 1.08992 * 109.47328 * 66.05554 * 22 20 16 46 46 H 1.09003 * 109.46408 * 186.05142 * 22 20 16 47 47 H 1.09007 * 109.47388 * 303.70623 * 23 22 20 48 48 H 1.08998 * 109.47650 * 63.70826 * 23 22 20 49 49 H 1.09001 * 109.47327 * 300.00112 * 24 23 22 50 50 H 1.09007 * 109.47410 * 59.99852 * 24 23 22 51 51 H 0.96697 * 114.00142 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6024 -1.6224 -1.1324 6 6 1.7639 -0.1963 -2.4812 7 7 2.0073 -0.9165 -3.5544 8 14 1.0547 1.5234 -2.6517 9 1 2.1599 2.5152 -2.6684 10 1 0.2853 1.6183 -3.9181 11 1 0.1553 1.8040 -1.5038 12 6 2.0399 -0.7212 1.2493 13 7 1.5515 -0.0306 2.4454 14 6 1.8775 -0.4907 3.6696 15 8 2.5766 -1.4793 3.7812 16 7 1.4329 0.1480 4.7700 17 6 0.6706 1.4097 4.7819 18 6 0.9402 2.0227 6.1788 19 6 0.9722 0.7558 7.0740 20 6 1.6221 -0.3016 6.1569 21 6 3.1160 -0.4102 6.4694 22 6 0.9450 -1.6584 6.3610 23 6 -0.5196 -1.5677 5.9279 24 6 -1.2204 -2.8964 6.2179 25 8 -2.5885 -2.8115 5.8139 26 1 -0.3633 0.6654 0.7832 27 1 -0.3633 0.3456 -0.9679 28 1 -0.3634 -1.0109 0.1846 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.8189 -0.5546 -4.4343 33 1 3.1299 -0.7208 1.2495 34 1 1.6765 -1.7489 1.2493 35 1 0.9942 0.7583 2.3564 36 1 1.0299 2.0775 3.9989 37 1 -0.3933 1.2115 4.6517 38 1 1.8993 2.5402 6.1999 39 1 0.1312 2.6903 6.4753 40 1 1.5811 0.9262 7.9619 41 1 -0.0379 0.4531 7.3501 42 1 3.5908 0.5588 6.3151 43 1 3.2487 -0.7189 7.5063 44 1 3.5726 -1.1477 5.8094 45 1 1.4549 -2.4128 5.7621 46 1 0.9960 -1.9350 7.4141 47 1 -1.0132 -0.7683 6.4808 48 1 -0.5703 -1.3557 4.8600 49 1 -0.7269 -3.6957 5.6651 50 1 -1.1698 -3.1084 7.2860 51 1 -3.0951 -3.6206 5.9683 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459238708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:14 Heat of formation + Delta-G solvation = -97.207919 kcal Electronic energy + Delta-G solvation = -28304.153017 eV Core-core repulsion = 24623.883839 eV Total energy + Delta-G solvation = -3680.269178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.73177 -39.60134 -38.18440 -37.82470 -35.26574 -34.39416 -33.44379 -32.20373 -31.76753 -28.07829 -27.53154 -27.15901 -26.89465 -26.10362 -23.51298 -22.57560 -21.84721 -20.93116 -20.16936 -18.72505 -18.13407 -17.97645 -17.25608 -17.08538 -16.65832 -16.59224 -16.04796 -15.54449 -15.14416 -15.04163 -14.79452 -14.70666 -14.48703 -14.11563 -14.04577 -14.00806 -13.85886 -13.78353 -13.68937 -13.15997 -12.95128 -12.79723 -12.39961 -12.33583 -12.18290 -12.13562 -12.01743 -11.96400 -11.88492 -11.79670 -11.48762 -11.35063 -11.07674 -10.95451 -10.85717 -10.65344 -10.40875 -10.08470 -9.39373 -8.29962 -6.33358 1.35921 1.37044 1.50572 1.69753 2.24305 2.34160 3.05879 3.11644 3.24847 3.65530 3.75535 3.95081 4.01704 4.05076 4.16481 4.26184 4.31085 4.38039 4.39220 4.44001 4.49672 4.59748 4.69379 4.70244 4.74363 4.77686 4.80607 4.83097 4.83637 4.90596 4.97628 5.02570 5.05560 5.12248 5.15341 5.15956 5.22398 5.31510 5.35173 5.41033 5.45289 5.56044 5.68491 5.72938 5.77439 6.18152 6.30629 6.71012 6.85593 7.10627 7.31968 7.68524 8.87394 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.016299 B = 0.003764 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.466341 B = 7437.484438 C = 7980.001016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.028 3.972 3 C -0.143 4.143 4 C -0.516 4.516 5 H 0.026 0.974 6 C 0.016 3.984 7 N -0.948 5.948 8 Si 0.949 3.051 9 H -0.281 1.281 10 H -0.314 1.314 11 H -0.206 1.206 12 C 0.180 3.820 13 N -0.729 5.729 14 C 0.714 3.286 15 O -0.631 6.631 16 N -0.626 5.626 17 C 0.086 3.914 18 C -0.120 4.120 19 C -0.118 4.118 20 C 0.176 3.824 21 C -0.152 4.152 22 C -0.117 4.117 23 C -0.107 4.107 24 C 0.074 3.926 25 O -0.595 6.595 26 H 0.061 0.939 27 H 0.047 0.953 28 H 0.037 0.963 29 H 0.046 0.954 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.265 0.735 33 H 0.037 0.963 34 H 0.033 0.967 35 H 0.403 0.597 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.055 0.945 43 H 0.084 0.916 44 H 0.036 0.964 45 H 0.041 0.959 46 H 0.097 0.903 47 H 0.085 0.915 48 H 0.035 0.965 49 H 0.031 0.969 50 H 0.070 0.930 51 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.847 7.686 27.464 29.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.027 3.973 3 C -0.200 4.200 4 C -0.554 4.554 5 H 0.044 0.956 6 C -0.181 4.181 7 N -0.588 5.588 8 Si 0.778 3.222 9 H -0.208 1.208 10 H -0.244 1.244 11 H -0.130 1.130 12 C 0.056 3.944 13 N -0.385 5.385 14 C 0.416 3.584 15 O -0.513 6.513 16 N -0.364 5.364 17 C -0.036 4.036 18 C -0.157 4.157 19 C -0.155 4.155 20 C 0.091 3.909 21 C -0.210 4.210 22 C -0.156 4.156 23 C -0.145 4.145 24 C -0.003 4.003 25 O -0.404 6.404 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.240 0.760 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.127 0.873 40 H 0.121 0.879 41 H 0.110 0.890 42 H 0.074 0.926 43 H 0.103 0.897 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.115 0.885 47 H 0.103 0.897 48 H 0.054 0.946 49 H 0.049 0.951 50 H 0.088 0.912 51 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -7.123 7.500 27.122 29.028 hybrid contribution -0.018 -0.433 -1.297 1.367 sum -7.141 7.067 25.826 27.711 Atomic orbital electron populations 1.22171 0.96139 1.00341 1.00714 1.18657 0.93715 0.93183 0.91762 1.22261 1.00927 0.96690 1.00100 1.21009 1.34565 1.09239 0.90595 0.95551 1.25879 0.95372 1.01861 0.95032 1.70093 1.50874 1.38901 0.98893 0.86244 0.79518 0.79603 0.76816 1.20804 1.24378 1.12968 1.20827 0.96816 0.94367 0.82426 1.45183 1.56186 1.33340 1.03837 1.15682 0.79974 0.82283 0.80460 1.90841 1.44488 1.29815 1.86158 1.47704 1.58500 1.25851 1.04339 1.22573 0.96256 0.84439 1.00376 1.22730 1.03820 0.97144 0.92053 1.22823 1.02267 0.92930 0.97512 1.21025 0.95370 0.94605 0.79900 1.22120 0.95066 1.01719 1.02137 1.21785 0.94281 0.97119 1.02391 1.21406 0.94803 0.97450 1.00837 1.22236 0.81604 0.97439 0.99032 1.86430 1.23026 1.43180 1.87734 0.92019 0.93461 0.94375 0.93523 0.94565 0.91084 0.92634 0.94445 0.94875 0.75983 0.90662 0.90878 0.90438 0.87333 0.87896 0.89029 0.92566 0.89686 0.94443 0.94000 0.88486 0.89668 0.94595 0.95107 0.91225 0.75471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.42 7.51 71.98 0.54 -4.88 16 2 C 0.03 1.24 0.50 -52.93 -0.03 1.21 16 3 C -0.14 -5.55 7.47 71.98 0.54 -5.01 16 4 C -0.52 -29.29 8.62 25.60 0.22 -29.07 16 5 H 0.03 1.70 7.99 -2.91 -0.02 1.68 16 6 C 0.02 0.90 5.36 84.65 0.45 1.36 16 7 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 8 Si 0.95 43.49 22.75 68.60 1.56 45.05 16 9 H -0.28 -12.54 7.10 99.48 0.71 -11.84 16 10 H -0.31 -14.79 7.11 99.48 0.71 -14.08 16 11 H -0.21 -8.00 4.62 99.48 0.46 -7.54 16 12 C 0.18 7.74 4.48 86.38 0.39 8.13 16 13 N -0.73 -24.96 4.96 -478.53 -2.37 -27.33 16 14 C 0.71 24.86 7.94 179.05 1.42 26.28 16 15 O -0.63 -27.34 14.05 -4.01 -0.06 -27.40 16 16 N -0.63 -15.47 1.92 -782.92 -1.50 -16.97 16 17 C 0.09 1.44 6.47 86.86 0.56 2.00 16 18 C -0.12 -1.26 7.09 31.99 0.23 -1.03 16 19 C -0.12 -1.31 5.84 31.79 0.19 -1.13 16 20 C 0.18 3.49 0.54 3.96 0.00 3.49 16 21 C -0.15 -3.28 8.36 71.98 0.60 -2.68 16 22 C -0.12 -2.45 4.14 30.59 0.13 -2.32 16 23 C -0.11 -2.27 5.15 30.59 0.16 -2.11 16 24 C 0.07 1.44 7.05 71.98 0.51 1.95 16 25 O -0.60 -12.30 13.66 -148.98 -2.04 -14.33 16 26 H 0.06 1.95 7.15 -2.39 -0.02 1.93 16 27 H 0.05 1.96 4.42 -2.38 -0.01 1.95 16 28 H 0.04 1.56 8.11 -2.39 -0.02 1.54 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.04 1.45 2.13 -2.39 -0.01 1.44 16 31 H 0.07 2.15 6.86 -2.39 -0.02 2.13 16 32 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 33 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.40 11.46 4.87 -92.71 -0.45 11.01 16 36 H 0.07 1.21 7.49 -2.39 -0.02 1.20 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 38 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.10 0.78 7.83 -2.38 -0.02 0.76 16 41 H 0.09 0.86 5.98 -2.39 -0.01 0.85 16 42 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 43 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.04 1.12 6.59 -2.39 -0.02 1.10 16 45 H 0.04 1.21 7.20 -2.39 -0.02 1.19 16 46 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.08 1.48 6.21 -2.38 -0.01 1.46 16 48 H 0.04 1.01 7.50 -2.39 -0.02 0.99 16 49 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 51 H 0.40 4.44 9.12 -74.06 -0.68 3.76 16 Total: -1.00 -78.01 373.96 1.35 -76.66 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: -0.45 Total: 27.62 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: 5.90 Total: -3.80 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -3.58 Total: -103.80 kcal Atomic # 8 Polarization: -39.64 SS G_CDS: -2.09 Total: -41.73 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.56 Total: 45.05 kcal Total: -78.01 1.35 -76.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459238708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.545 kcal (2) G-P(sol) polarization free energy of solvation -78.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds