Wall clock time and date at job start Tue Mar 31 2020 11:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47384 * 2 1 4 4 C 1.53002 * 109.46918 * 119.99907 * 2 1 3 5 5 C 1.52993 * 109.47315 * 299.99978 * 4 2 1 6 6 C 1.53002 * 109.47315 * 180.02562 * 5 4 2 7 7 O 1.42898 * 109.47113 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47463 * 240.00014 * 2 1 3 9 9 N 1.46505 * 109.47312 * 59.99715 * 8 2 1 10 10 C 1.34773 * 120.00182 * 180.02562 * 9 8 2 11 11 O 1.21592 * 119.99841 * 355.01243 * 10 9 8 12 12 N 1.34781 * 119.99797 * 175.02061 * 10 9 8 13 13 C 1.46918 * 120.62921 * 4.93423 * 12 10 9 14 14 C 1.53636 * 108.54010 * 126.37430 * 13 12 10 15 15 C 1.53036 * 109.24089 * 54.85542 * 14 13 12 16 16 C 1.53038 * 109.53978 * 298.51190 * 15 14 13 17 17 H 1.09002 * 109.49815 * 301.41800 * 16 15 14 18 18 C 1.50693 * 109.52656 * 181.33495 * 16 15 14 19 19 H 1.08002 * 120.00392 * 0.14060 * 18 16 15 20 20 C 1.37885 * 120.00133 * 180.14385 * 18 16 15 21 21 N 1.31510 * 120.00144 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 119.99950 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47210 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46999 * 120.00339 * 22 20 18 25 25 H 1.48504 * 109.47147 * 240.00105 * 22 20 18 26 26 C 1.46925 * 120.62615 * 185.22306 * 12 10 9 27 27 H 1.08996 * 109.47426 * 300.00230 * 1 2 3 28 28 H 1.08998 * 109.46921 * 60.00384 * 1 2 3 29 29 H 1.09004 * 109.46849 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47458 * 179.97438 * 3 2 1 31 31 H 1.09006 * 109.46959 * 300.00318 * 3 2 1 32 32 H 1.09004 * 109.46879 * 59.99801 * 3 2 1 33 33 H 1.09007 * 109.46766 * 179.97438 * 4 2 1 34 34 H 1.08995 * 109.46883 * 60.00385 * 4 2 1 35 35 H 1.08997 * 109.47192 * 60.00274 * 5 4 2 36 36 H 1.09004 * 109.47562 * 300.00211 * 5 4 2 37 37 H 1.08995 * 109.46883 * 300.00407 * 6 5 4 38 38 H 1.09007 * 109.46766 * 60.00020 * 6 5 4 39 39 H 0.96703 * 113.99846 * 180.02562 * 7 6 5 40 40 H 1.08997 * 109.47546 * 179.97438 * 8 2 1 41 41 H 1.09004 * 109.47383 * 300.00035 * 8 2 1 42 42 H 0.97000 * 119.99765 * 0.02562 * 9 8 2 43 43 H 1.09001 * 109.59176 * 246.20284 * 13 12 10 44 44 H 1.08996 * 109.59150 * 6.63211 * 13 12 10 45 45 H 1.09003 * 109.63146 * 294.86319 * 14 13 12 46 46 H 1.09006 * 109.45355 * 174.74184 * 14 13 12 47 47 H 1.08993 * 109.45858 * 178.48994 * 15 14 13 48 48 H 1.08999 * 109.46197 * 58.53380 * 15 14 13 49 49 H 0.96995 * 120.00214 * 180.02562 * 21 20 18 50 50 H 1.09003 * 109.58962 * 353.36403 * 26 12 10 51 51 H 1.08997 * 109.58697 * 113.79626 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5300 0.0000 2.4985 6 6 2.0405 -0.7209 3.7478 7 8 1.5636 -0.0476 4.9145 8 6 2.0401 -0.7212 -1.2492 9 7 1.5517 -0.0307 -2.4454 10 6 1.8770 -0.4914 -3.6695 11 8 2.6484 -1.4245 -3.7827 12 7 1.3472 0.0822 -4.7681 13 6 0.4998 1.2769 -4.6540 14 6 1.0669 2.3679 -5.5752 15 6 1.1858 1.8155 -6.9974 16 6 2.1514 0.6282 -7.0063 17 1 3.1256 0.9488 -6.6372 18 6 2.2935 0.1051 -8.4124 19 1 1.7513 0.5738 -9.2204 20 6 3.1156 -0.9720 -8.6675 21 7 3.7754 -1.5432 -7.6837 22 14 3.2912 -1.6208 -10.4104 23 1 2.4502 -0.8103 -11.3274 24 1 4.7121 -1.5294 -10.8318 25 1 2.8512 -3.0384 -10.4575 26 6 1.6011 -0.4792 -6.1019 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 -0.7216 1.2490 34 1 1.6766 -1.7489 1.2492 35 1 0.4400 0.0000 2.4985 36 1 1.8933 1.0277 2.4985 37 1 1.6775 -1.7487 3.7479 38 1 3.1305 -0.7205 3.7475 39 1 1.8496 -0.4507 5.7457 40 1 3.1300 -0.7208 -1.2494 41 1 1.6768 -1.7489 -1.2493 42 1 0.9943 0.7582 -2.3565 43 1 -0.5186 1.0329 -4.9562 44 1 0.5025 1.6298 -3.6227 45 1 2.0514 2.6721 -5.2195 46 1 0.3977 3.2283 -5.5737 47 1 1.5627 2.5951 -7.6594 48 1 0.2051 1.4886 -7.3431 49 1 4.3540 -2.3007 -7.8632 50 1 2.3308 -1.2854 -6.0263 51 1 0.6707 -0.8636 -6.5198 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596534412.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:47 Heat of formation + Delta-G solvation = -102.181111 kcal Electronic energy + Delta-G solvation = -27174.626092 eV Core-core repulsion = 23494.141260 eV Total energy + Delta-G solvation = -3680.484832 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.91171 -38.59519 -37.16626 -36.51464 -33.91930 -33.14321 -31.75942 -31.10443 -29.64861 -27.49037 -26.93496 -25.83553 -25.00283 -23.89361 -21.87823 -21.71199 -20.00021 -19.20005 -18.65102 -17.58260 -17.42484 -16.19184 -16.04954 -15.67452 -15.18983 -15.05724 -14.60358 -14.30910 -14.14797 -13.70074 -13.62642 -13.50487 -13.38796 -13.18174 -12.72737 -12.53004 -12.35913 -12.31689 -12.04075 -11.91391 -11.75271 -11.51869 -11.34392 -10.97798 -10.88550 -10.85584 -10.77774 -10.61420 -10.45862 -10.36424 -10.28473 -10.19289 -9.83294 -9.37201 -9.05655 -8.89516 -8.64709 -8.38014 -7.57556 -5.94136 -4.03394 3.27365 3.34261 3.41148 3.44150 3.83577 3.92465 4.42852 4.49664 4.53766 4.54035 4.63639 4.75434 4.93778 5.07425 5.25904 5.26138 5.31914 5.33839 5.35596 5.49578 5.51454 5.52389 5.62145 5.66033 5.69456 5.84387 5.87100 5.89327 5.93299 5.98143 6.00743 6.18165 6.20601 6.22561 6.34527 6.62503 6.71134 6.84824 6.91526 7.03254 7.09730 7.24105 7.40771 7.56746 7.79946 7.98141 8.11718 8.45649 8.66187 9.00624 9.33704 9.61961 11.10680 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.027341 B = 0.002598 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.874146 B =10776.372145 C =11473.778160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.074 4.074 3 C -0.145 4.145 4 C -0.104 4.104 5 C -0.122 4.122 6 C 0.073 3.927 7 O -0.577 6.577 8 C 0.151 3.849 9 N -0.755 5.755 10 C 0.699 3.301 11 O -0.583 6.583 12 N -0.624 5.624 13 C 0.116 3.884 14 C -0.133 4.133 15 C -0.109 4.109 16 C 0.039 3.961 17 H 0.028 0.972 18 C -0.521 4.521 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.878 5.878 22 Si 0.891 3.109 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.129 3.871 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.378 0.622 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.389 0.611 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.050 0.950 48 H 0.049 0.951 49 H 0.262 0.738 50 H 0.123 0.877 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.719 4.846 21.247 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.202 4.202 4 C -0.142 4.142 5 C -0.160 4.160 6 C -0.004 4.004 7 O -0.383 6.383 8 C 0.026 3.974 9 N -0.416 5.416 10 C 0.400 3.600 11 O -0.460 6.460 12 N -0.360 5.360 13 C -0.008 4.008 14 C -0.171 4.171 15 C -0.147 4.147 16 C 0.020 3.980 17 H 0.046 0.954 18 C -0.559 4.559 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.515 5.515 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.210 1.210 26 C 0.008 3.992 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.226 0.774 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.073 0.927 50 H 0.141 0.859 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.296 4.353 20.714 22.083 hybrid contribution 0.130 -0.359 -0.493 0.623 sum -6.166 3.995 20.221 21.515 Atomic orbital electron populations 1.21939 0.94158 1.02254 1.01782 1.20766 0.96216 0.96137 0.94331 1.21942 1.01484 0.94982 1.01769 1.21459 1.01088 0.99261 0.92425 1.21630 1.01950 1.00352 0.92018 1.22243 0.97457 0.95150 0.85587 1.86473 1.77663 1.57789 1.16355 1.21094 0.98910 0.95299 0.82112 1.45368 1.58003 1.33600 1.04581 1.15972 0.81029 0.82724 0.80261 1.90927 1.38320 1.31453 1.85336 1.47771 1.51752 1.29132 1.07375 1.21560 0.94316 0.86645 0.98286 1.22022 1.00581 0.96697 0.97831 1.21608 1.00454 0.99369 0.93286 1.18985 0.93836 0.90306 0.94888 0.95369 1.21113 1.27118 1.14955 0.92739 0.92373 1.25069 0.95398 0.96716 0.96933 1.69913 1.28376 1.22585 1.30649 0.86556 0.77810 0.78787 0.84963 1.19827 1.21061 1.20999 1.22166 1.00255 1.00131 0.76638 0.92138 0.92621 0.92331 0.92251 0.92608 0.92146 0.91288 0.91344 0.90864 0.90840 0.93701 0.93664 0.77502 0.91870 0.92081 0.77361 0.92216 0.92349 0.92196 0.92426 0.93110 0.93231 0.92750 0.85889 0.94371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 7.95 37.16 0.30 -0.94 16 2 C -0.07 -0.68 0.56 -154.51 -0.09 -0.77 16 3 C -0.14 -1.28 7.95 37.16 0.30 -0.99 16 4 C -0.10 -0.82 4.27 -26.73 -0.11 -0.94 16 5 C -0.12 -0.93 4.88 -26.73 -0.13 -1.06 16 6 C 0.07 0.51 7.05 37.16 0.26 0.78 16 7 O -0.58 -4.55 13.66 -35.23 -0.48 -5.03 16 8 C 0.15 1.97 4.57 -4.04 -0.02 1.95 16 9 N -0.75 -11.42 4.87 -65.22 -0.32 -11.74 16 10 C 0.70 14.59 8.30 -86.92 -0.72 13.87 16 11 O -0.58 -15.02 15.77 5.29 0.08 -14.94 16 12 N -0.62 -12.83 2.97 -178.23 -0.53 -13.36 16 13 C 0.12 1.83 6.42 -3.48 -0.02 1.80 16 14 C -0.13 -2.16 6.10 -26.38 -0.16 -2.32 16 15 C -0.11 -2.20 5.11 -26.69 -0.14 -2.34 16 16 C 0.04 0.98 2.25 -91.65 -0.21 0.78 16 17 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 18 C -0.52 -14.29 8.57 -34.44 -0.29 -14.59 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 20 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 21 N -0.88 -26.09 11.39 55.43 0.63 -25.46 16 22 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 26 C 0.13 3.20 5.41 -3.71 -0.02 3.18 16 27 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 28 H 0.05 0.49 6.86 -51.93 -0.36 0.13 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.51 6.86 -51.93 -0.36 0.16 16 32 H 0.06 0.47 6.43 -51.93 -0.33 0.13 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.58 6.43 -51.93 -0.33 0.25 16 36 H 0.07 0.59 6.43 -51.93 -0.33 0.26 16 37 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.38 1.27 9.12 45.56 0.42 1.68 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.39 4.88 3.65 -40.82 -0.15 4.74 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.06 0.73 5.64 -51.93 -0.29 0.44 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 50 H 0.12 3.59 5.11 -51.93 -0.27 3.32 16 51 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 385.31 15.07 5.81 5.81 Total: -1.00 -33.88 385.31 -9.20 -43.08 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -8.22 Total: 5.08 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -1.15 Total: 0.07 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: -0.21 Total: -50.56 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.40 Total: -19.97 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.88 -9.20 -43.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596534412.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.101 kcal (2) G-P(sol) polarization free energy of solvation -33.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds