Wall clock time and date at job start Tue Mar 31 2020 11:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47244 * 2 1 4 4 C 1.52995 * 109.47073 * 64.99957 * 3 2 1 5 5 C 1.53001 * 109.47307 * 63.94437 * 4 3 2 6 6 C 1.52995 * 109.47082 * 184.99993 * 3 2 1 7 7 H 1.09004 * 109.47311 * 302.77074 * 6 3 2 8 8 C 1.53002 * 109.47140 * 182.77402 * 6 3 2 9 9 C 1.50698 * 109.47556 * 62.77214 * 6 3 2 10 10 O 1.21282 * 119.99676 * 21.06281 * 9 6 3 11 11 N 1.34773 * 120.00441 * 201.06679 * 9 6 3 12 12 C 1.47156 * 120.98055 * 354.58953 * 11 9 6 13 13 C 1.53295 * 108.41315 * 230.54291 * 12 11 9 14 14 O 1.42956 * 109.22558 * 307.67821 * 13 12 11 15 15 C 1.42962 * 114.16558 * 62.58416 * 14 13 12 16 16 H 1.09005 * 109.51127 * 57.34315 * 15 14 13 17 17 C 1.53001 * 109.51439 * 177.44439 * 15 14 13 18 18 N 1.46508 * 109.47032 * 300.00418 * 17 15 14 19 19 C 1.36937 * 119.99934 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99905 * 359.97438 * 19 18 17 21 21 C 1.38808 * 119.99944 * 179.97438 * 19 18 17 22 22 N 1.31627 * 120.00034 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00201 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46956 * 60.00405 * 23 21 19 25 25 H 1.48497 * 109.47186 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47083 * 300.00406 * 23 21 19 27 27 C 1.47227 * 121.03378 * 174.61693 * 11 9 6 28 28 H 1.08998 * 109.47468 * 300.00527 * 1 2 3 29 29 H 1.09005 * 109.46805 * 60.00015 * 1 2 3 30 30 H 1.09004 * 109.47498 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47374 * 240.00018 * 2 1 3 32 32 H 1.08996 * 109.46902 * 119.99789 * 2 1 3 33 33 H 1.08996 * 109.47151 * 304.99922 * 3 2 1 34 34 H 1.09004 * 109.47276 * 183.94994 * 4 3 2 35 35 H 1.09003 * 109.47009 * 303.94232 * 4 3 2 36 36 H 1.09001 * 109.46863 * 304.50060 * 5 4 3 37 37 H 1.08992 * 109.46810 * 64.50412 * 5 4 3 38 38 H 1.09004 * 109.46877 * 184.50215 * 5 4 3 39 39 H 1.08998 * 109.46689 * 301.76714 * 8 6 3 40 40 H 1.08997 * 109.47053 * 61.76700 * 8 6 3 41 41 H 1.09002 * 109.47430 * 181.77024 * 8 6 3 42 42 H 1.08995 * 109.67909 * 110.80134 * 12 11 9 43 43 H 1.08997 * 109.67960 * 350.28587 * 12 11 9 44 44 H 1.09001 * 109.51463 * 67.60738 * 13 12 11 45 45 H 1.09009 * 109.50787 * 187.75445 * 13 12 11 46 46 H 1.09001 * 109.47073 * 59.99838 * 17 15 14 47 47 H 1.08993 * 109.47794 * 179.97438 * 17 15 14 48 48 H 0.97001 * 119.99728 * 359.97438 * 18 17 15 49 49 H 0.96999 * 120.00081 * 180.02562 * 22 21 19 50 50 H 1.09008 * 109.66744 * 9.73184 * 27 11 9 51 51 H 1.08999 * 109.70790 * 249.21239 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 1.3073 5 6 2.3243 1.4296 2.4822 6 6 3.5648 1.4443 -0.1257 7 1 3.9973 0.8636 0.6891 8 6 4.0806 2.8831 -0.0562 9 6 3.9609 0.8318 -1.4444 10 8 3.1615 0.7838 -2.3552 11 7 5.2034 0.3373 -1.6117 12 6 6.2264 0.4891 -0.5648 13 6 7.4963 1.0584 -1.2075 14 8 7.8555 0.2537 -2.3332 15 6 6.8803 0.2409 -3.3785 16 1 6.6931 1.2609 -3.7142 17 6 7.3979 -0.5960 -4.5501 18 7 8.6446 -0.0135 -5.0531 19 6 9.2957 -0.5956 -6.1077 20 1 8.8904 -1.4844 -6.5685 21 6 10.4766 -0.0435 -6.5846 22 7 10.9703 1.0399 -6.0233 23 14 11.3652 -0.8380 -8.0228 24 1 10.4719 -0.8535 -9.2090 25 1 12.5912 -0.0613 -8.3373 26 1 11.7386 -2.2302 -7.6660 27 6 5.5788 -0.3703 -2.8470 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6054 1.9815 -0.8418 34 1 1.9370 3.1736 1.2782 35 1 0.5541 2.0634 1.4308 36 1 2.0859 0.3661 2.4643 37 1 3.4032 1.5616 2.4008 38 1 1.9746 1.8647 3.4185 39 1 3.6239 3.4715 -0.8520 40 1 3.8214 3.3157 0.9101 41 1 5.1638 2.8870 -0.1773 42 1 6.4436 -0.4821 -0.1203 43 1 5.8661 1.1724 0.2042 44 1 7.3113 2.0813 -1.5354 45 1 8.3079 1.0497 -0.4799 46 1 7.5832 -1.6162 -4.2140 47 1 6.6538 -0.6057 -5.3465 48 1 9.0084 0.7849 -4.6394 49 1 11.7953 1.4260 -6.3568 50 1 4.7893 -0.2558 -3.5898 51 1 5.7306 -1.4282 -2.6329 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755004607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:38 Heat of formation + Delta-G solvation = -83.732787 kcal Electronic energy + Delta-G solvation = -27544.061085 eV Core-core repulsion = 23864.376232 eV Total energy + Delta-G solvation = -3679.684852 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.78084 -38.86736 -37.29201 -35.09356 -34.36659 -32.82301 -32.04576 -31.22595 -30.09404 -28.12295 -26.86677 -25.91878 -24.40125 -23.47511 -23.01953 -22.08116 -20.86718 -19.79195 -18.60790 -17.66596 -17.04666 -16.53894 -16.12695 -15.83038 -15.36141 -15.17796 -14.76732 -14.64647 -14.38879 -14.03913 -13.75519 -13.41617 -13.32137 -13.25569 -13.10181 -12.76596 -12.72312 -12.46446 -12.37494 -12.15048 -12.02290 -11.86489 -11.62604 -11.54991 -11.22527 -10.98456 -10.87819 -10.76293 -10.68607 -10.60985 -10.53299 -10.41463 -10.07437 -9.86726 -9.72289 -9.57935 -8.83852 -8.50496 -6.86737 -5.70500 -2.99132 2.54512 2.80588 3.48120 3.51813 3.53242 3.95806 4.20444 4.33781 4.52438 4.60350 4.72201 4.75337 4.85450 4.91027 4.99423 5.02717 5.06317 5.07716 5.15509 5.18243 5.28441 5.32322 5.36840 5.44091 5.49802 5.57352 5.60947 5.61986 5.64916 5.67640 5.70046 5.75690 5.81266 5.88667 5.91909 5.95363 5.97597 5.98994 6.16322 6.26415 6.29581 6.36485 6.58207 6.71677 7.29101 7.47684 7.73481 8.09121 8.47750 9.59309 10.16717 10.52920 11.52298 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.030279 B = 0.002619 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.506223 B =10690.505157 C =11173.433112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.069 4.069 4 C -0.122 4.122 5 C -0.158 4.158 6 C -0.107 4.107 7 H 0.094 0.906 8 C -0.148 4.148 9 C 0.521 3.479 10 O -0.537 6.537 11 N -0.614 5.614 12 C 0.069 3.931 13 C 0.046 3.954 14 O -0.356 6.356 15 C 0.074 3.926 16 H 0.062 0.938 17 C 0.164 3.836 18 N -0.726 5.726 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.085 3.915 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.053 0.947 45 H 0.104 0.896 46 H 0.028 0.972 47 H 0.035 0.965 48 H 0.388 0.612 49 H 0.255 0.745 50 H 0.101 0.899 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.564 2.079 20.219 27.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.088 4.088 4 C -0.160 4.160 5 C -0.215 4.215 6 C -0.128 4.128 7 H 0.112 0.888 8 C -0.206 4.206 9 C 0.310 3.690 10 O -0.414 6.414 11 N -0.349 5.349 12 C -0.055 4.055 13 C -0.032 4.032 14 O -0.274 6.274 15 C 0.015 3.985 16 H 0.080 0.920 17 C 0.035 3.965 18 N -0.370 5.370 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.038 4.038 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.111 0.889 44 H 0.071 0.929 45 H 0.122 0.878 46 H 0.046 0.954 47 H 0.053 0.947 48 H 0.222 0.778 49 H 0.065 0.935 50 H 0.119 0.881 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.775 1.840 19.577 27.188 hybrid contribution 0.575 -0.045 -0.542 0.791 sum -18.200 1.795 19.036 26.397 Atomic orbital electron populations 1.21768 0.95817 1.01377 1.01688 1.21653 0.96179 0.96229 1.02150 1.21026 0.92309 0.97094 0.98369 1.21639 1.00716 0.99524 0.94078 1.21910 1.00751 1.01049 0.97822 1.21425 0.98001 0.98099 0.95277 0.88832 1.21887 1.01292 0.94190 1.03198 1.20675 0.80992 0.77445 0.89929 1.90682 1.50486 1.57025 1.43164 1.48205 1.11212 1.56983 1.18450 1.22580 0.89491 1.02585 0.90809 1.22909 0.96004 0.94475 0.89842 1.88167 1.43239 1.68870 1.27126 1.22784 0.87113 1.00019 0.88541 0.91998 1.20623 0.90210 0.94997 0.90642 1.42204 1.23566 1.33002 1.38238 1.19186 1.03366 1.07667 1.06830 0.91212 1.24742 0.98280 0.98016 0.99955 1.69669 1.22437 1.22468 1.43542 0.86250 0.79062 0.78400 0.82362 1.21289 1.21718 1.21269 1.22338 0.98265 0.96334 0.86893 0.92743 0.92665 0.93050 0.91345 0.92156 0.89997 0.91692 0.91470 0.92319 0.92542 0.92953 0.91739 0.90908 0.92008 0.90492 0.88898 0.92898 0.87794 0.95415 0.94728 0.77832 0.93526 0.88115 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.67 37.16 0.36 -0.86 16 2 C -0.12 -1.14 5.07 -26.73 -0.14 -1.28 16 3 C -0.07 -0.60 1.40 -90.62 -0.13 -0.73 16 4 C -0.12 -0.80 5.00 -26.73 -0.13 -0.93 16 5 C -0.16 -0.91 9.12 37.16 0.34 -0.57 16 6 C -0.11 -0.95 0.92 -91.77 -0.08 -1.04 16 7 H 0.09 0.70 5.58 -51.93 -0.29 0.41 16 8 C -0.15 -1.15 8.33 37.16 0.31 -0.84 16 9 C 0.52 6.67 6.09 -10.99 -0.07 6.60 16 10 O -0.54 -8.72 14.43 5.56 0.08 -8.64 16 11 N -0.61 -7.80 3.02 -172.22 -0.52 -8.32 16 12 C 0.07 0.69 6.03 -3.53 -0.02 0.67 16 13 C 0.05 0.57 6.98 37.31 0.26 0.83 16 14 O -0.36 -6.29 10.13 -35.23 -0.36 -6.65 16 15 C 0.07 1.30 2.86 -26.58 -0.08 1.22 16 16 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 17 C 0.16 3.43 5.96 -4.04 -0.02 3.41 16 18 N -0.73 -19.23 5.50 -59.91 -0.33 -19.56 16 19 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.93 13.06 55.49 0.72 -28.21 16 23 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 C 0.08 1.24 5.95 -3.49 -0.02 1.22 16 28 H 0.05 0.38 6.48 -51.93 -0.34 0.04 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.81 6.44 -51.93 -0.33 0.47 16 32 H 0.06 0.49 6.22 -51.93 -0.32 0.17 16 33 H 0.08 0.87 7.79 -51.93 -0.40 0.47 16 34 H 0.06 0.40 6.65 -51.93 -0.35 0.05 16 35 H 0.07 0.43 6.39 -51.93 -0.33 0.09 16 36 H 0.06 0.35 6.23 -51.93 -0.32 0.03 16 37 H 0.06 0.31 6.43 -51.93 -0.33 -0.03 16 38 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.43 6.32 -51.93 -0.33 0.10 16 41 H 0.06 0.47 6.57 -51.93 -0.34 0.13 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 0.68 4.65 -51.93 -0.24 0.44 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.10 1.07 8.14 -51.92 -0.42 0.65 16 46 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.39 10.91 7.54 -40.82 -0.31 10.60 16 49 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 50 H 0.10 1.56 7.07 -51.92 -0.37 1.19 16 51 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 381.93 15.07 5.76 5.76 Total: -1.00 -33.76 381.93 -8.14 -41.90 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -8.80 Total: 5.75 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 0.33 Total: 0.13 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.13 Total: -56.09 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.28 Total: -15.29 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.76 -8.14 -41.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755004607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.832 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds