Wall clock time and date at job start Tue Mar 31 2020 09:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47528 * 2 1 4 4 C 1.53003 * 109.47004 * 239.99760 * 2 1 3 5 5 O 1.45206 * 109.47039 * 120.00339 * 2 1 3 6 6 C 1.34636 * 117.00189 * 59.99776 * 5 2 1 7 7 O 1.21512 * 120.00083 * 359.97438 * 6 5 2 8 8 N 1.34775 * 119.99839 * 180.02562 * 6 5 2 9 9 C 1.46504 * 119.99531 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46883 * 179.97438 * 9 8 6 11 11 N 1.46898 * 109.47006 * 180.02562 * 10 9 8 12 12 C 1.46846 * 111.00018 * 294.20961 * 11 10 9 13 13 C 1.53033 * 109.52460 * 174.16134 * 12 11 10 14 14 C 1.53124 * 109.27811 * 59.18358 * 13 12 11 15 15 C 1.52997 * 109.57677 * 182.41245 * 14 13 12 16 16 C 1.50704 * 109.46970 * 294.71143 * 15 14 13 17 17 H 1.08000 * 120.00035 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00165 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99952 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00125 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47421 * 59.99912 * 20 18 16 22 22 H 1.48497 * 109.47438 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47121 * 300.00341 * 20 18 16 24 24 C 1.53125 * 109.15751 * 302.34732 * 14 13 12 25 25 C 1.46851 * 110.99682 * 170.00115 * 11 10 9 26 26 H 1.08997 * 109.46754 * 299.99874 * 1 2 3 27 27 H 1.08995 * 109.47089 * 59.99665 * 1 2 3 28 28 H 1.08995 * 109.47061 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47393 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46756 * 300.00536 * 3 2 1 31 31 H 1.09007 * 109.46618 * 59.99855 * 3 2 1 32 32 H 1.08999 * 109.46994 * 300.00562 * 4 2 1 33 33 H 1.09005 * 109.46770 * 60.00287 * 4 2 1 34 34 H 1.08995 * 109.47195 * 179.97438 * 4 2 1 35 35 H 0.96992 * 120.00503 * 359.97438 * 8 6 5 36 36 H 1.09001 * 109.46891 * 60.00097 * 9 8 6 37 37 H 1.08993 * 109.47378 * 299.99469 * 9 8 6 38 38 H 1.09001 * 109.46801 * 300.00349 * 10 9 8 39 39 H 1.09001 * 109.46998 * 59.99945 * 10 9 8 40 40 H 1.09002 * 109.46555 * 294.18280 * 12 11 10 41 41 H 1.09001 * 109.46296 * 54.14881 * 12 11 10 42 42 H 1.08997 * 109.50475 * 299.23909 * 13 12 11 43 43 H 1.09002 * 109.50799 * 179.12007 * 13 12 11 44 44 H 1.08994 * 109.52258 * 62.24925 * 14 13 12 45 45 H 1.09004 * 109.47282 * 54.71039 * 15 14 13 46 46 H 1.09000 * 109.47154 * 174.71313 * 15 14 13 47 47 H 0.96997 * 120.00000 * 180.02562 * 19 18 16 48 48 H 1.09005 * 109.50073 * 297.71107 * 24 14 13 49 49 H 1.08991 * 109.50379 * 177.59621 * 24 14 13 50 50 H 1.08989 * 109.46428 * 305.85572 * 25 11 10 51 51 H 1.09002 * 109.45912 * 65.83533 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6846 1.1856 6 6 1.6523 -1.9724 1.3383 7 8 0.9508 -2.5095 0.5040 8 7 2.0672 -2.6655 2.4171 9 6 1.6730 -4.0666 2.5836 10 6 2.2733 -4.6147 3.8799 11 7 1.8786 -6.0198 4.0465 12 6 0.4290 -6.1388 4.2488 13 6 0.0356 -7.6175 4.2727 14 6 0.7873 -8.3224 5.4053 15 6 0.4449 -9.8135 5.3976 16 6 -1.0150 -9.9954 5.7243 17 1 -1.6365 -9.1336 5.9177 18 6 -1.5575 -11.2619 5.7754 19 7 -0.8008 -12.3113 5.5395 20 14 -3.3672 -11.4872 6.1797 21 1 -4.1925 -10.7842 5.1649 22 1 -3.6997 -12.9345 6.1724 23 1 -3.6482 -10.9220 7.5239 24 6 2.2936 -8.1422 5.1971 25 6 2.6216 -6.6483 5.1463 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9562 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6766 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7209 -1.2495 35 1 2.6268 -2.2367 3.0833 36 1 2.0395 -4.6499 1.7388 37 1 0.5862 -4.1355 2.6285 38 1 3.3602 -4.5459 3.8345 39 1 1.9072 -4.0315 4.7248 40 1 0.1552 -5.6747 5.1963 41 1 -0.0938 -5.6371 3.4345 42 1 0.2965 -8.0790 3.3203 43 1 -1.0381 -7.7059 4.4385 44 1 0.4971 -7.8869 6.3614 45 1 0.6508 -10.2286 4.4109 46 1 1.0509 -10.3293 6.1425 47 1 -1.1825 -13.2023 5.5750 48 1 2.5900 -8.6119 4.2591 49 1 2.8331 -8.6053 6.0231 50 1 3.6912 -6.5166 4.9838 51 1 2.3373 -6.1820 6.0896 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496053708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:24 Heat of formation + Delta-G solvation = -102.027238 kcal Electronic energy + Delta-G solvation = -26301.019624 eV Core-core repulsion = 22620.541465 eV Total energy + Delta-G solvation = -3680.478159 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 6.51 seconds Orbital eigenvalues (eV) -40.96874 -39.00226 -37.66193 -35.58494 -34.50930 -33.86511 -32.25536 -30.47591 -29.34992 -27.74471 -27.67569 -27.04742 -24.23066 -22.97553 -22.68150 -21.60009 -20.68499 -20.19318 -18.93583 -18.38496 -16.92277 -16.52085 -16.25256 -15.90511 -15.31399 -15.00230 -14.83165 -14.60816 -14.43620 -14.13431 -13.78411 -13.60882 -13.37227 -13.11074 -12.84141 -12.58817 -12.34185 -12.23718 -12.21552 -12.11837 -11.85598 -11.83876 -11.61859 -11.46581 -11.46009 -11.06430 -10.81878 -10.66008 -10.64534 -10.57077 -10.29708 -10.24073 -9.95307 -9.54980 -9.34937 -9.03168 -8.87345 -8.30689 -8.20201 -5.95323 -3.96833 1.90823 2.65315 3.35362 3.40023 3.42175 3.74641 4.20137 4.39044 4.43285 4.49163 4.57744 4.66811 4.89342 5.13045 5.21005 5.23795 5.26157 5.28475 5.35953 5.39681 5.43328 5.44466 5.53528 5.54453 5.64972 5.66525 5.70663 5.80032 5.84467 5.94585 5.97706 5.99316 6.12050 6.14580 6.23029 6.29377 6.43418 6.56102 6.66666 6.97799 7.09150 7.17473 7.20352 7.26508 7.31735 7.72178 7.88954 8.05265 8.17922 8.48183 9.09462 9.66489 11.15918 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.023407 B = 0.002118 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.947316 B =13215.574003 C =13978.772419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.367 6.367 6 C 0.649 3.351 7 O -0.564 6.564 8 N -0.710 5.710 9 C 0.138 3.862 10 C 0.045 3.955 11 N -0.532 5.532 12 C 0.050 3.950 13 C -0.100 4.100 14 C -0.082 4.082 15 C 0.028 3.972 16 C -0.515 4.515 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.889 3.111 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 C -0.112 4.112 25 C 0.062 3.938 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.404 0.596 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.038 0.962 40 H 0.029 0.971 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.051 0.949 45 H 0.017 0.983 46 H 0.014 0.986 47 H 0.260 0.740 48 H 0.067 0.933 49 H 0.061 0.939 50 H 0.067 0.933 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.710 26.453 -8.439 29.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.282 6.282 6 C 0.402 3.598 7 O -0.453 6.453 8 N -0.370 5.370 9 C 0.015 3.985 10 C -0.084 4.084 11 N -0.257 5.257 12 C -0.077 4.077 13 C -0.138 4.138 14 C -0.101 4.101 15 C -0.009 4.009 16 C -0.553 4.553 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.150 4.150 25 C -0.066 4.066 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.238 0.762 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.069 0.931 45 H 0.035 0.965 46 H 0.032 0.968 47 H 0.069 0.931 48 H 0.085 0.915 49 H 0.080 0.920 50 H 0.085 0.915 51 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 8.456 25.788 -9.347 28.704 hybrid contribution -0.993 0.416 1.264 1.660 sum 7.463 26.204 -8.083 28.420 Atomic orbital electron populations 1.22522 0.93933 1.05220 1.02462 1.22070 0.94421 0.91449 0.82102 1.21861 1.02217 0.92565 1.03119 1.22521 1.01525 1.03647 0.96419 1.86287 1.71671 1.23718 1.46553 1.18033 0.79013 0.80459 0.82279 1.90926 1.40842 1.70377 1.43162 1.44662 1.55710 1.12966 1.23641 1.21372 1.00468 0.77863 0.98771 1.22171 1.00643 0.90051 0.95522 1.61837 1.06568 1.12651 1.44666 1.22333 0.86713 0.99425 0.99239 1.21551 1.00776 0.91639 0.99804 1.21246 0.92050 0.99905 0.96873 1.19113 0.96118 0.88478 0.97189 1.21212 0.95068 0.91948 1.47082 0.92786 1.25019 0.97637 0.96249 0.95617 1.69954 1.35537 0.98147 1.49903 0.86710 0.85798 0.76905 0.78876 1.20279 1.21388 1.20387 1.21699 0.98240 0.93177 1.01894 1.22111 0.97129 0.96368 0.90981 0.92195 0.91127 0.89262 0.91489 0.90123 0.91501 0.89255 0.91138 0.92187 0.76164 0.90022 0.90794 0.90272 0.94406 0.95264 0.91225 0.91711 0.90808 0.93063 0.96467 0.96764 0.93054 0.91472 0.92014 0.91500 0.95238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 8.37 37.16 0.31 -1.29 16 2 C 0.14 1.18 1.13 -90.62 -0.10 1.08 16 3 C -0.14 -0.83 8.85 37.16 0.33 -0.50 16 4 C -0.18 -1.58 8.37 37.16 0.31 -1.27 16 5 O -0.37 -3.81 9.94 -40.31 -0.40 -4.21 16 6 C 0.65 7.64 8.06 54.05 0.44 8.07 16 7 O -0.56 -8.09 11.88 -19.28 -0.23 -8.31 16 8 N -0.71 -6.85 5.56 -65.28 -0.36 -7.22 16 9 C 0.14 1.48 5.60 -4.04 -0.02 1.46 16 10 C 0.04 0.46 5.07 -3.82 -0.02 0.44 16 11 N -0.53 -7.18 4.66 -234.67 -1.09 -8.28 16 12 C 0.05 0.75 5.29 -3.84 -0.02 0.73 16 13 C -0.10 -1.85 5.15 -26.65 -0.14 -1.99 16 14 C -0.08 -1.65 2.20 -90.49 -0.20 -1.85 16 15 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 16 C -0.51 -14.33 8.45 -34.44 -0.29 -14.62 16 17 H 0.05 1.46 7.08 -52.49 -0.37 1.09 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 20 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C -0.11 -1.89 5.38 -26.65 -0.14 -2.03 16 25 C 0.06 0.84 5.46 -3.83 -0.02 0.82 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.09 1.01 5.88 -51.93 -0.31 0.71 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 1.00 5.88 -51.93 -0.31 0.70 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.40 2.88 8.58 -40.82 -0.35 2.53 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.89 6.43 -51.93 -0.33 0.56 16 38 H 0.08 0.70 7.99 -51.93 -0.41 0.29 16 39 H 0.04 0.37 8.12 -51.93 -0.42 -0.06 16 40 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.96 6.21 -51.93 -0.32 0.64 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.07 1.46 7.06 -51.93 -0.37 1.10 16 44 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 48 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 49 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 50 H 0.07 0.79 8.01 -51.94 -0.42 0.38 16 51 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 393.31 15.07 5.93 5.93 Total: -1.00 -31.46 393.31 -9.74 -41.20 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -9.51 Total: -0.71 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 0.21 Total: -8.86 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: -0.72 Total: -41.74 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -0.63 Total: -12.52 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.46 -9.74 -41.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496053708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.830 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.52 seconds