Wall clock time and date at job start Tue Mar 31 2020 09:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47528 * 2 1 4 4 C 1.53003 * 109.47004 * 239.99760 * 2 1 3 5 5 O 1.45206 * 109.47039 * 120.00339 * 2 1 3 6 6 C 1.34636 * 117.00189 * 59.99776 * 5 2 1 7 7 O 1.21512 * 120.00083 * 359.97438 * 6 5 2 8 8 N 1.34775 * 119.99839 * 180.02562 * 6 5 2 9 9 C 1.46504 * 119.99531 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46883 * 179.97438 * 9 8 6 11 11 N 1.46898 * 109.47006 * 180.02562 * 10 9 8 12 12 C 1.46846 * 111.00018 * 294.20961 * 11 10 9 13 13 C 1.53033 * 109.52460 * 174.16134 * 12 11 10 14 14 C 1.53124 * 109.27811 * 59.18358 * 13 12 11 15 15 C 1.52997 * 109.57677 * 182.41245 * 14 13 12 16 16 C 1.50704 * 109.46970 * 294.71143 * 15 14 13 17 17 H 1.08000 * 120.00035 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00165 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99952 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00125 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47421 * 59.99912 * 20 18 16 22 22 H 1.48497 * 109.47438 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47121 * 300.00341 * 20 18 16 24 24 C 1.53125 * 109.15751 * 302.34732 * 14 13 12 25 25 C 1.46851 * 110.99682 * 170.00115 * 11 10 9 26 26 H 1.08997 * 109.46754 * 299.99874 * 1 2 3 27 27 H 1.08995 * 109.47089 * 59.99665 * 1 2 3 28 28 H 1.08995 * 109.47061 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47393 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46756 * 300.00536 * 3 2 1 31 31 H 1.09007 * 109.46618 * 59.99855 * 3 2 1 32 32 H 1.08999 * 109.46994 * 300.00562 * 4 2 1 33 33 H 1.09005 * 109.46770 * 60.00287 * 4 2 1 34 34 H 1.08995 * 109.47195 * 179.97438 * 4 2 1 35 35 H 0.96992 * 120.00503 * 359.97438 * 8 6 5 36 36 H 1.09001 * 109.46891 * 60.00097 * 9 8 6 37 37 H 1.08993 * 109.47378 * 299.99469 * 9 8 6 38 38 H 1.09001 * 109.46801 * 300.00349 * 10 9 8 39 39 H 1.09001 * 109.46998 * 59.99945 * 10 9 8 40 40 H 1.09002 * 109.46555 * 294.18280 * 12 11 10 41 41 H 1.09001 * 109.46296 * 54.14881 * 12 11 10 42 42 H 1.08997 * 109.50475 * 299.23909 * 13 12 11 43 43 H 1.09002 * 109.50799 * 179.12007 * 13 12 11 44 44 H 1.08994 * 109.52258 * 62.24925 * 14 13 12 45 45 H 1.09004 * 109.47282 * 54.71039 * 15 14 13 46 46 H 1.09000 * 109.47154 * 174.71313 * 15 14 13 47 47 H 0.96997 * 120.00000 * 180.02562 * 19 18 16 48 48 H 1.09005 * 109.50073 * 297.71107 * 24 14 13 49 49 H 1.08991 * 109.50379 * 177.59621 * 24 14 13 50 50 H 1.08989 * 109.46428 * 305.85572 * 25 11 10 51 51 H 1.09002 * 109.45912 * 65.83533 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6846 1.1856 6 6 1.6523 -1.9724 1.3383 7 8 0.9508 -2.5095 0.5040 8 7 2.0672 -2.6655 2.4171 9 6 1.6730 -4.0666 2.5836 10 6 2.2733 -4.6147 3.8799 11 7 1.8786 -6.0198 4.0465 12 6 0.4290 -6.1388 4.2488 13 6 0.0356 -7.6175 4.2727 14 6 0.7873 -8.3224 5.4053 15 6 0.4449 -9.8135 5.3976 16 6 -1.0150 -9.9954 5.7243 17 1 -1.6365 -9.1336 5.9177 18 6 -1.5575 -11.2619 5.7754 19 7 -0.8008 -12.3113 5.5395 20 14 -3.3672 -11.4872 6.1797 21 1 -4.1925 -10.7842 5.1649 22 1 -3.6997 -12.9345 6.1724 23 1 -3.6482 -10.9220 7.5239 24 6 2.2936 -8.1422 5.1971 25 6 2.6216 -6.6483 5.1463 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9562 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6766 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7209 -1.2495 35 1 2.6268 -2.2367 3.0833 36 1 2.0395 -4.6499 1.7388 37 1 0.5862 -4.1355 2.6285 38 1 3.3602 -4.5459 3.8345 39 1 1.9072 -4.0315 4.7248 40 1 0.1552 -5.6747 5.1963 41 1 -0.0938 -5.6371 3.4345 42 1 0.2965 -8.0790 3.3203 43 1 -1.0381 -7.7059 4.4385 44 1 0.4971 -7.8869 6.3614 45 1 0.6508 -10.2286 4.4109 46 1 1.0509 -10.3293 6.1425 47 1 -1.1825 -13.2023 5.5750 48 1 2.5900 -8.6119 4.2591 49 1 2.8331 -8.6053 6.0231 50 1 3.6912 -6.5166 4.9838 51 1 2.3373 -6.1820 6.0896 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496053708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:20 Heat of formation + Delta-G solvation = -122.920020 kcal Electronic energy + Delta-G solvation = -26301.925603 eV Core-core repulsion = 22620.541465 eV Total energy + Delta-G solvation = -3681.384138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.79519 -40.19322 -38.52056 -36.76720 -35.66330 -34.90231 -34.05348 -31.76799 -30.71580 -28.59559 -28.34791 -28.27033 -25.83472 -24.28917 -23.75005 -22.69247 -22.03376 -21.01677 -20.42864 -19.20662 -18.42036 -17.71800 -17.36786 -16.92076 -16.51838 -16.26136 -15.90284 -15.67197 -15.41843 -15.22185 -14.93028 -14.75720 -14.65732 -14.38278 -14.02931 -13.72527 -13.33330 -13.27228 -13.15467 -12.94593 -12.89165 -12.84620 -12.74761 -12.73149 -12.56868 -12.43722 -12.31423 -12.17019 -12.08952 -11.97706 -11.64234 -11.37744 -11.23642 -11.13200 -10.86837 -10.68906 -10.50844 -10.20611 -9.25464 -8.16396 -6.25844 1.12493 1.39443 1.42201 1.49768 1.76408 2.42084 2.85263 3.16405 3.34109 3.77246 3.78939 3.81758 3.96761 3.99791 4.04782 4.14669 4.18547 4.40720 4.47469 4.53891 4.59050 4.63213 4.65525 4.72374 4.77712 4.78490 4.83920 4.85480 4.89362 4.90247 4.96798 5.01576 5.08104 5.12932 5.17874 5.25361 5.30036 5.37659 5.40367 5.43688 5.47858 5.59159 5.59487 5.82683 5.90947 6.13455 6.18664 6.31492 6.41214 6.90326 7.35204 7.42234 8.95166 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.023407 B = 0.002118 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.947316 B =13215.574003 C =13978.772419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.125 3.875 3 C -0.135 4.135 4 C -0.181 4.181 5 O -0.367 6.367 6 C 0.644 3.356 7 O -0.595 6.595 8 N -0.697 5.697 9 C 0.146 3.854 10 C 0.054 3.946 11 N -0.545 5.545 12 C 0.062 3.938 13 C -0.096 4.096 14 C -0.075 4.075 15 C 0.033 3.967 16 C -0.529 4.529 17 H 0.060 0.940 18 C -0.004 4.004 19 N -0.935 5.935 20 Si 0.960 3.040 21 H -0.268 1.268 22 H -0.285 1.285 23 H -0.267 1.267 24 C -0.109 4.109 25 C 0.070 3.930 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.419 0.581 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.102 0.898 39 H 0.054 0.946 40 H 0.037 0.963 41 H 0.080 0.920 42 H 0.047 0.953 43 H 0.054 0.946 44 H 0.049 0.951 45 H -0.014 1.014 46 H -0.013 1.013 47 H 0.261 0.739 48 H 0.054 0.946 49 H 0.064 0.936 50 H 0.095 0.905 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.043 29.468 -8.070 31.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.089 3.911 3 C -0.192 4.192 4 C -0.238 4.238 5 O -0.281 6.281 6 C 0.397 3.603 7 O -0.486 6.486 8 N -0.358 5.358 9 C 0.023 3.977 10 C -0.074 4.074 11 N -0.271 5.271 12 C -0.066 4.066 13 C -0.134 4.134 14 C -0.094 4.094 15 C -0.004 4.004 16 C -0.567 4.567 17 H 0.078 0.922 18 C -0.201 4.201 19 N -0.576 5.576 20 Si 0.785 3.215 21 H -0.193 1.193 22 H -0.211 1.211 23 H -0.192 1.192 24 C -0.147 4.147 25 C -0.058 4.058 26 H 0.081 0.919 27 H 0.108 0.892 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.119 0.881 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.256 0.744 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.120 0.880 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.098 0.902 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.005 0.995 46 H 0.005 0.995 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.082 0.918 50 H 0.113 0.887 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.813 28.843 -8.959 31.461 hybrid contribution -1.068 -0.534 1.102 1.625 sum 7.745 28.309 -7.857 30.383 Atomic orbital electron populations 1.22480 0.94197 1.03541 1.03599 1.22412 0.94442 0.92803 0.81484 1.21880 1.02511 0.90451 1.04339 1.22477 1.01715 1.02126 0.97453 1.86303 1.71556 1.22883 1.47402 1.18251 0.78780 0.80901 0.82329 1.90923 1.42215 1.71089 1.44356 1.44505 1.55401 1.12457 1.23428 1.21183 0.99603 0.78261 0.98692 1.22153 1.01951 0.87946 0.95378 1.61734 1.05482 1.15093 1.44783 1.22126 0.88108 0.96235 1.00116 1.21421 0.99401 0.94424 0.98110 1.21097 0.94910 0.95957 0.97445 1.19018 0.94968 0.92129 0.94333 1.21628 0.96255 0.92286 1.46562 0.92200 1.25966 1.02629 0.96004 0.95505 1.70098 1.37724 0.98634 1.51101 0.85576 0.79839 0.76946 0.79144 1.19327 1.21073 1.19200 1.21613 0.95496 0.96238 1.01310 1.22028 0.98713 0.93480 0.91529 0.91878 0.89178 0.92245 0.91026 0.88073 0.91116 0.92234 0.89191 0.91775 0.74427 0.91609 0.92203 0.87964 0.92750 0.94477 0.90195 0.93450 0.92710 0.93213 0.99524 0.99475 0.92992 0.92749 0.91770 0.88669 0.94259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 8.37 71.98 0.60 -2.39 16 2 C 0.12 1.98 1.13 -10.79 -0.01 1.97 16 3 C -0.13 -1.24 8.85 71.98 0.64 -0.60 16 4 C -0.18 -2.94 8.37 71.98 0.60 -2.34 16 5 O -0.37 -7.14 9.94 -55.45 -0.55 -7.69 16 6 C 0.64 14.72 8.06 129.79 1.05 15.76 16 7 O -0.59 -17.32 11.88 19.80 0.24 -17.09 16 8 N -0.70 -12.27 5.56 -590.84 -3.29 -15.55 16 9 C 0.15 2.91 5.60 86.38 0.48 3.40 16 10 C 0.05 0.93 5.07 86.31 0.44 1.37 16 11 N -0.55 -13.52 4.66 -896.37 -4.17 -17.70 16 12 C 0.06 1.75 5.29 86.32 0.46 2.21 16 13 C -0.10 -3.60 5.15 30.65 0.16 -3.44 16 14 C -0.08 -3.08 2.20 -10.71 -0.02 -3.10 16 15 C 0.03 1.74 4.45 29.85 0.13 1.87 16 16 C -0.53 -30.24 8.45 25.60 0.22 -30.02 16 17 H 0.06 3.27 7.08 -2.91 -0.02 3.25 16 18 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 19 N -0.93 -57.97 13.29 21.45 0.28 -57.68 16 20 Si 0.96 45.03 29.54 68.60 2.03 47.06 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 C -0.11 -3.61 5.38 30.65 0.16 -3.45 16 25 C 0.07 1.72 5.46 86.32 0.47 2.19 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.06 1.37 5.88 -2.39 -0.01 1.35 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.06 1.36 5.88 -2.39 -0.01 1.34 16 33 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.42 4.85 8.58 -92.71 -0.80 4.05 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.06 1.38 6.43 -2.39 -0.02 1.37 16 38 H 0.10 1.37 7.99 -2.39 -0.02 1.35 16 39 H 0.05 0.82 8.12 -2.39 -0.02 0.80 16 40 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.08 2.12 6.21 -2.39 -0.01 2.11 16 42 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.05 2.22 7.06 -2.39 -0.02 2.21 16 44 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 45 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 46 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 47 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 48 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 49 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 50 H 0.10 1.88 8.01 -2.39 -0.02 1.86 16 51 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -70.98 393.31 0.46 -70.52 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.09 Total: 14.46 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: 5.84 Total: -16.32 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -7.17 Total: -90.94 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.32 Total: -24.78 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -70.98 0.46 -70.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496053708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.402 kcal (2) G-P(sol) polarization free energy of solvation -70.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds