Wall clock time and date at job start Tue Mar 31 2020 10:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46950 * 2 1 4 4 H 1.09002 * 109.47042 * 54.67107 * 3 2 1 5 5 C 1.50703 * 109.46784 * 174.66508 * 3 2 1 6 6 H 1.08006 * 119.99471 * 120.00496 * 5 3 2 7 7 C 1.37876 * 120.00290 * 300.00279 * 5 3 2 8 8 N 1.31516 * 119.99761 * 179.97438 * 7 5 3 9 9 Si 1.86793 * 119.99899 * 359.97438 * 7 5 3 10 10 H 1.48511 * 109.47163 * 90.00176 * 9 7 5 11 11 H 1.48497 * 109.47118 * 209.99996 * 9 7 5 12 12 H 1.48497 * 109.47275 * 329.99875 * 9 7 5 13 13 N 1.46895 * 109.47233 * 294.66584 * 3 2 1 14 14 C 1.46905 * 110.99751 * 152.64073 * 13 3 2 15 15 H 1.08997 * 110.88962 * 323.01291 * 14 13 3 16 16 C 1.54916 * 111.00147 * 86.89456 * 14 13 3 17 17 N 1.47425 * 104.83092 * 155.08498 * 16 14 13 18 18 C 1.34773 * 125.64805 * 155.90826 * 17 16 14 19 19 O 1.21512 * 120.00200 * 359.97438 * 18 17 16 20 20 O 1.34637 * 120.00197 * 179.97438 * 18 17 16 21 21 C 1.45199 * 117.00069 * 179.97438 * 20 18 17 22 22 C 1.52997 * 109.47110 * 60.00345 * 21 20 18 23 23 C 1.53005 * 109.46997 * 180.02562 * 21 20 18 24 24 C 1.52998 * 109.47108 * 300.00113 * 21 20 18 25 25 C 1.47018 * 108.70292 * 335.86727 * 17 16 14 26 26 C 1.54318 * 107.27253 * 1.06315 * 25 17 16 27 27 H 1.08999 * 110.72253 * 263.82536 * 26 25 17 28 28 C 1.53009 * 110.72231 * 140.55444 * 26 25 17 29 29 H 1.09003 * 109.46586 * 295.61029 * 1 2 3 30 30 H 1.09000 * 109.47373 * 55.60913 * 1 2 3 31 31 H 1.08997 * 109.47055 * 175.61759 * 1 2 3 32 32 H 1.08998 * 109.46931 * 240.00441 * 2 1 3 33 33 H 1.08999 * 109.47249 * 120.00449 * 2 1 3 34 34 H 0.96995 * 119.99894 * 180.02562 * 8 7 5 35 35 H 1.00900 * 111.00348 * 276.59890 * 13 3 2 36 36 H 1.09001 * 110.36716 * 273.92177 * 16 14 13 37 37 H 1.08993 * 110.36798 * 36.13370 * 16 14 13 38 38 H 1.08999 * 109.47146 * 59.99769 * 22 21 20 39 39 H 1.09002 * 109.47204 * 179.97438 * 22 21 20 40 40 H 1.08993 * 109.47122 * 299.99902 * 22 21 20 41 41 H 1.09000 * 109.46726 * 60.00126 * 23 21 20 42 42 H 1.08998 * 109.46794 * 179.97438 * 23 21 20 43 43 H 1.08999 * 109.47036 * 300.00094 * 23 21 20 44 44 H 1.08998 * 109.47088 * 60.00899 * 24 21 20 45 45 H 1.09002 * 109.46814 * 180.02562 * 24 21 20 46 46 H 1.08996 * 109.47649 * 299.99706 * 24 21 20 47 47 H 1.09002 * 109.88314 * 120.47647 * 25 17 16 48 48 H 1.09003 * 109.88794 * 241.48861 * 25 17 16 49 49 H 1.08998 * 109.46603 * 306.47646 * 28 26 25 50 50 H 1.08999 * 109.46920 * 66.47701 * 28 26 25 51 51 H 1.08997 * 109.46710 * 186.47978 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6008 1.9832 0.8384 5 6 3.5412 1.4446 0.1321 6 1 4.1507 1.8877 -0.6416 7 6 4.1365 0.8807 1.2406 8 7 5.4466 0.8821 1.3555 9 14 3.0822 0.1150 2.5790 10 1 2.8620 -1.3217 2.2744 11 1 3.7729 0.2434 3.8873 12 1 1.7737 0.8145 2.6393 13 7 1.6583 2.0969 -1.2586 14 6 1.5240 3.5485 -1.0775 15 1 1.0947 3.7806 -0.1029 16 6 2.8868 4.2602 -1.2677 17 7 2.5413 5.6361 -1.6686 18 6 3.3243 6.7212 -1.5076 19 8 4.4191 6.6094 -0.9924 20 8 2.8936 7.9291 -1.9177 21 6 3.7894 9.0531 -1.7120 22 6 5.0984 8.8064 -2.4645 23 6 3.1323 10.3315 -2.2364 24 6 4.0810 9.2061 -0.2179 25 6 1.2015 5.6285 -2.2738 26 6 0.6828 4.1761 -2.2203 27 1 0.8715 3.6642 -3.1639 28 6 -0.8074 4.1458 -1.8749 29 1 -0.3632 0.4442 0.9268 30 1 -0.3634 0.5804 -0.8480 31 1 -0.3633 -1.0246 -0.0785 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 5.8655 0.4851 2.1351 35 1 2.3178 1.8833 -1.9917 36 1 3.4453 4.2666 -0.3317 37 1 3.4652 3.7692 -2.0502 38 1 4.8906 8.6974 -3.5290 39 1 5.7708 9.6504 -2.3105 40 1 5.5664 7.8958 -2.0906 41 1 2.1998 10.5071 -1.6999 42 1 3.8046 11.1754 -2.0816 43 1 2.9242 10.2228 -3.3008 44 1 4.5491 8.2956 0.1560 45 1 4.7531 10.0503 -0.0635 46 1 3.1485 9.3820 0.3183 47 1 0.5357 6.2809 -1.7088 48 1 1.2603 5.9657 -3.3087 49 1 -0.9797 4.7116 -0.9594 50 1 -1.3784 4.5907 -2.6899 51 1 -1.1257 3.1135 -1.7294 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152254.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:14 Heat of formation + Delta-G solvation = -83.146443 kcal Electronic energy + Delta-G solvation = -28027.103598 eV Core-core repulsion = 24347.444171 eV Total energy + Delta-G solvation = -3679.659426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.63403 -38.93634 -36.68531 -35.76106 -34.04375 -32.70233 -31.99222 -31.38906 -27.99018 -27.48942 -27.39440 -26.40716 -26.24304 -23.02986 -22.32480 -21.12779 -20.30673 -19.75239 -19.17953 -17.63878 -16.90558 -16.56223 -16.23141 -15.54920 -15.02385 -14.71976 -14.29837 -14.26767 -13.84173 -13.61989 -13.38410 -13.13808 -12.98136 -12.91294 -12.58321 -12.52740 -12.25776 -12.13380 -11.92684 -11.90872 -11.83248 -11.69860 -11.56635 -11.37274 -11.30622 -11.15626 -10.97083 -10.81098 -10.66302 -10.53100 -10.30466 -10.10742 -9.82629 -9.76433 -9.47427 -9.20332 -8.58396 -8.46296 -7.53626 -6.12900 -4.15197 2.27768 3.08570 3.24806 3.35741 3.37536 4.02913 4.35830 4.66955 4.69930 4.70827 4.81205 4.86088 5.02905 5.18966 5.32503 5.36847 5.46113 5.51200 5.52525 5.61057 5.62750 5.65804 5.69159 5.78035 5.82515 5.89175 5.93375 5.99866 6.02902 6.05546 6.21461 6.23740 6.28777 6.30085 6.36831 6.41694 6.48061 6.52435 6.66405 6.66880 6.70221 6.92738 7.05203 7.21774 7.50947 7.74756 7.92271 8.25722 8.42876 8.58256 8.88543 9.49438 10.99516 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.015454 B = 0.003972 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.362905 B = 7048.288589 C = 8333.632779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C 0.183 3.817 4 H 0.033 0.967 5 C -0.550 4.550 6 H 0.076 0.924 7 C 0.076 3.924 8 N -0.893 5.893 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.265 1.265 13 N -0.662 5.662 14 C 0.095 3.905 15 H 0.088 0.912 16 C 0.103 3.897 17 N -0.601 5.601 18 C 0.662 3.338 19 O -0.563 6.563 20 O -0.365 6.365 21 C 0.135 3.865 22 C -0.184 4.184 23 C -0.138 4.138 24 C -0.184 4.184 25 C 0.110 3.890 26 C -0.097 4.097 27 H 0.087 0.913 28 C -0.133 4.133 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.033 0.967 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.339 0.661 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.090 0.910 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.066 0.934 48 H 0.064 0.936 49 H 0.051 0.949 50 H 0.050 0.950 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.682 13.994 -7.919 18.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.154 4.154 3 C 0.074 3.926 4 H 0.050 0.950 5 C -0.588 4.588 6 H 0.094 0.906 7 C -0.128 4.128 8 N -0.530 5.530 9 Si 0.718 3.282 10 H -0.205 1.205 11 H -0.227 1.227 12 H -0.190 1.190 13 N -0.290 5.290 14 C -0.017 4.017 15 H 0.106 0.894 16 C -0.019 4.019 17 N -0.342 5.342 18 C 0.417 3.583 19 O -0.452 6.452 20 O -0.281 6.281 21 C 0.099 3.901 22 C -0.241 4.241 23 C -0.196 4.196 24 C -0.241 4.241 25 C -0.013 4.013 26 C -0.117 4.117 27 H 0.105 0.895 28 C -0.190 4.190 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.157 0.843 36 H 0.111 0.889 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.109 0.891 45 H 0.086 0.914 46 H 0.077 0.923 47 H 0.085 0.915 48 H 0.082 0.918 49 H 0.070 0.930 50 H 0.069 0.931 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.789 13.916 -7.553 18.615 hybrid contribution 0.756 -0.169 0.901 1.188 sum -9.033 13.746 -6.652 17.743 Atomic orbital electron populations 1.21751 0.97607 0.99557 1.01270 1.21816 0.93786 0.99263 1.00503 1.19661 0.94654 0.90732 0.87590 0.94954 1.21732 0.90252 1.39551 1.07271 0.90586 1.24991 0.94703 0.95215 0.97880 1.69916 1.09021 1.44624 1.29451 0.86851 0.80645 0.79829 0.80858 1.20502 1.22671 1.19003 1.60818 1.53462 1.04900 1.09852 1.22714 0.92191 0.88967 0.97840 0.89431 1.23274 0.99362 0.77488 1.01808 1.47224 1.17777 1.06330 1.62912 1.17569 0.82681 0.80135 0.77953 1.90931 1.20612 1.85299 1.48356 1.86285 1.48490 1.15525 1.77756 1.22004 0.88895 0.83062 0.96187 1.22516 0.96673 1.04659 1.00229 1.21838 1.01423 0.94353 1.01945 1.22521 1.02450 1.04600 0.94553 1.22135 0.83240 0.98073 0.97888 1.22263 0.95921 0.93210 1.00284 0.89471 1.21656 0.94013 1.02734 1.00635 0.94363 0.91726 0.94826 0.92334 0.93691 0.92609 0.84278 0.88885 0.91323 0.92343 0.91348 0.89172 0.91604 0.90336 0.91623 0.89143 0.91355 0.92298 0.91543 0.91788 0.92964 0.93124 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.85 37.16 0.37 -2.12 16 2 C -0.12 -2.38 5.11 -26.73 -0.14 -2.52 16 3 C 0.18 3.94 1.57 -68.86 -0.11 3.84 16 4 H 0.03 0.75 6.51 -51.93 -0.34 0.41 16 5 C -0.55 -14.35 8.38 -34.44 -0.29 -14.64 16 6 H 0.08 2.15 7.49 -52.48 -0.39 1.76 16 7 C 0.08 2.11 5.45 -17.82 -0.10 2.01 16 8 N -0.89 -26.88 13.96 55.43 0.77 -26.11 16 9 Si 0.89 21.60 24.41 -169.99 -4.15 17.45 16 10 H -0.28 -6.62 6.83 56.52 0.39 -6.23 16 11 H -0.30 -7.41 7.11 56.52 0.40 -7.00 16 12 H -0.27 -6.17 6.53 56.52 0.37 -5.80 16 13 N -0.66 -11.78 5.56 -98.70 -0.55 -12.33 16 14 C 0.10 1.55 2.76 -65.56 -0.18 1.37 16 15 H 0.09 1.52 7.44 -51.93 -0.39 1.14 16 16 C 0.10 1.88 5.39 -2.53 -0.01 1.86 16 17 N -0.60 -9.89 3.33 -176.30 -0.59 -10.48 16 18 C 0.66 11.66 7.93 54.05 0.43 12.09 16 19 O -0.56 -11.50 12.14 -19.28 -0.23 -11.73 16 20 O -0.37 -5.46 9.49 -40.31 -0.38 -5.85 16 21 C 0.14 1.68 1.13 -90.62 -0.10 1.58 16 22 C -0.18 -2.26 8.37 37.16 0.31 -1.95 16 23 C -0.14 -1.23 8.85 37.16 0.33 -0.90 16 24 C -0.18 -2.31 8.37 37.16 0.31 -1.99 16 25 C 0.11 1.42 6.49 -3.07 -0.02 1.40 16 26 C -0.10 -1.23 3.25 -88.78 -0.29 -1.52 16 27 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 28 C -0.13 -1.45 9.16 37.16 0.34 -1.11 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 1.04 7.65 -51.93 -0.40 0.64 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.04 1.01 3.22 -51.93 -0.17 0.84 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 35 H 0.34 6.14 7.92 -39.29 -0.31 5.82 16 36 H 0.09 2.05 7.92 -51.93 -0.41 1.64 16 37 H 0.07 1.29 7.79 -51.93 -0.40 0.88 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.40 5.88 -51.93 -0.31 1.09 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.09 1.43 5.88 -51.93 -0.31 1.12 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.07 0.80 7.76 -51.93 -0.40 0.40 16 48 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.05 0.57 8.06 -51.93 -0.42 0.15 16 50 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 387.22 15.07 5.84 5.84 Total: -1.00 -30.04 387.22 -7.79 -37.83 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -9.34 Total: 7.99 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 0.85 Total: -2.61 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -0.36 Total: -48.92 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.62 Total: -17.58 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.15 Total: 17.45 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.04 -7.79 -37.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152254.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.320 kcal (2) G-P(sol) polarization free energy of solvation -30.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds