Wall clock time and date at job start Tue Mar 31 2020 10:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46648 * 2 1 4 4 H 1.08995 * 109.46868 * 55.04515 * 3 2 1 5 5 C 1.50695 * 109.46912 * 175.04573 * 3 2 1 6 6 H 1.08004 * 120.00000 * 120.00304 * 5 3 2 7 7 C 1.37880 * 120.00272 * 299.99893 * 5 3 2 8 8 N 1.31512 * 119.99635 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00208 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47144 * 89.99950 * 9 7 5 11 11 H 1.48500 * 109.47125 * 210.00500 * 9 7 5 12 12 H 1.48508 * 109.46841 * 330.00086 * 9 7 5 13 13 N 1.46897 * 109.47175 * 295.04815 * 3 2 1 14 14 C 1.46901 * 111.00252 * 154.79914 * 13 3 2 15 15 H 1.08993 * 110.91669 * 41.13235 * 14 13 3 16 16 C 1.54908 * 110.99861 * 277.23541 * 14 13 3 17 17 N 1.47429 * 104.82942 * 204.91663 * 16 14 13 18 18 C 1.34775 * 125.64659 * 204.09280 * 17 16 14 19 19 O 1.21513 * 120.00361 * 359.72257 * 18 17 16 20 20 O 1.34643 * 120.00064 * 179.97438 * 18 17 16 21 21 C 1.45195 * 117.00313 * 179.72761 * 20 18 17 22 22 C 1.53003 * 109.47248 * 59.99441 * 21 20 18 23 23 C 1.52992 * 109.47215 * 179.97438 * 21 20 18 24 24 C 1.53004 * 109.47004 * 299.99757 * 21 20 18 25 25 C 1.47019 * 108.70422 * 24.35458 * 17 16 14 26 26 C 1.54334 * 107.26279 * 358.58776 * 25 17 16 27 27 H 1.09006 * 110.99920 * 219.60147 * 26 25 17 28 28 C 1.52995 * 110.51318 * 96.45486 * 26 25 17 29 29 H 1.09001 * 109.46997 * 295.89824 * 1 2 3 30 30 H 1.08990 * 109.47581 * 55.90124 * 1 2 3 31 31 H 1.09002 * 109.46708 * 175.90272 * 1 2 3 32 32 H 1.08998 * 109.46809 * 240.00205 * 2 1 3 33 33 H 1.08992 * 109.47141 * 119.99709 * 2 1 3 34 34 H 0.97003 * 120.00074 * 180.02562 * 8 7 5 35 35 H 1.00900 * 110.99697 * 278.75068 * 13 3 2 36 36 H 1.09002 * 110.37111 * 86.08129 * 16 14 13 37 37 H 1.08998 * 110.46608 * 323.79707 * 16 14 13 38 38 H 1.09004 * 109.46899 * 60.00877 * 22 21 20 39 39 H 1.08999 * 109.47154 * 180.02562 * 22 21 20 40 40 H 1.08995 * 109.47544 * 300.00481 * 22 21 20 41 41 H 1.09000 * 109.47421 * 59.99648 * 23 21 20 42 42 H 1.09008 * 109.46969 * 179.97438 * 23 21 20 43 43 H 1.09004 * 109.47518 * 299.99482 * 23 21 20 44 44 H 1.09005 * 109.46856 * 60.00059 * 24 21 20 45 45 H 1.08999 * 109.47145 * 180.02562 * 24 21 20 46 46 H 1.08998 * 109.47124 * 300.00356 * 24 21 20 47 47 H 1.09001 * 109.88423 * 118.13344 * 25 17 16 48 48 H 1.09007 * 109.88078 * 239.29796 * 25 17 16 49 49 H 1.09000 * 109.47178 * 306.49194 * 28 26 25 50 50 H 1.08997 * 109.47863 * 66.50012 * 28 26 25 51 51 H 1.09006 * 109.47215 * 186.49726 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6059 1.9813 0.8422 5 6 3.5419 1.4444 0.1227 6 1 4.1466 1.8893 -0.6538 7 6 4.1442 0.8783 1.2262 8 7 3.4079 0.3362 2.1715 9 14 6.0060 0.8799 1.3780 10 1 6.4443 2.1127 2.0804 11 1 6.4407 -0.3114 2.1507 12 1 6.6131 0.8398 0.0232 13 7 1.6503 2.0997 -1.2547 14 6 1.5669 3.5562 -1.0824 15 1 2.3911 3.9235 -0.4711 16 6 0.2011 3.9662 -0.4774 17 7 -0.0019 5.3597 -0.9140 18 6 -0.7785 6.2713 -0.2957 19 8 -1.3892 5.9673 0.7100 20 8 -0.8818 7.5174 -0.7951 21 6 -1.7406 8.4449 -0.0807 22 6 -1.2270 8.6167 1.3503 23 6 -1.7311 9.7996 -0.7915 24 6 -3.1683 7.8957 -0.0475 25 6 0.7781 5.5883 -2.1390 26 6 1.5283 4.2773 -2.4556 27 1 2.5379 4.4814 -2.8125 28 6 0.7512 3.4489 -3.4806 29 1 -0.3633 0.4489 0.9245 30 1 -0.3634 0.5761 -0.8509 31 1 -0.3633 -1.0251 -0.0734 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8899 34 1 3.8315 -0.0618 2.9481 35 1 2.2856 1.8597 -2.0010 36 1 0.2361 3.9109 0.6107 37 1 -0.5938 3.3282 -0.8635 38 1 -0.2099 9.0080 1.3267 39 1 -1.8720 9.3126 1.8867 40 1 -1.2334 7.6517 1.8570 41 1 -2.0968 9.6775 -1.8111 42 1 -2.3763 10.4957 -0.2554 43 1 -0.7140 10.1907 -0.8147 44 1 -3.1747 6.9306 0.4592 45 1 -3.8132 8.5922 0.4884 46 1 -3.5342 7.7732 -1.0669 47 1 0.1100 5.8434 -2.9617 48 1 1.4947 6.3937 -1.9773 49 1 -0.2708 3.3035 -3.1305 50 1 0.7368 3.9733 -4.4360 51 1 1.2338 2.4795 -3.6055 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152255.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:17 Heat of formation + Delta-G solvation = -88.658271 kcal Electronic energy + Delta-G solvation = -27946.223284 eV Core-core repulsion = 24266.324846 eV Total energy + Delta-G solvation = -3679.898437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.70490 -38.98389 -36.69579 -35.54613 -34.08903 -32.76093 -31.73795 -30.59929 -28.04673 -27.53339 -27.44943 -26.45044 -25.90424 -23.42112 -22.42192 -21.28362 -19.67545 -19.24514 -19.13772 -17.75472 -16.60364 -16.47715 -16.36969 -15.33037 -15.07675 -14.78604 -14.39163 -14.11231 -13.82789 -13.75557 -13.42457 -13.10217 -12.75686 -12.71945 -12.62883 -12.37733 -12.17871 -12.10779 -11.98035 -11.93860 -11.70559 -11.45499 -11.38604 -11.28639 -11.20133 -11.08472 -10.82902 -10.71439 -10.54600 -10.37440 -10.26632 -10.07066 -9.89075 -9.59694 -9.47395 -9.10187 -8.50368 -8.39750 -7.39428 -6.02642 -4.15915 2.21582 3.00782 3.24866 3.32720 3.34300 3.98582 4.36892 4.62449 4.66029 4.70926 4.80815 4.89905 5.02079 5.21843 5.31560 5.32735 5.41556 5.46235 5.56154 5.63025 5.65426 5.68464 5.73937 5.77075 5.84952 5.86784 6.04825 6.09811 6.19981 6.23000 6.30088 6.31634 6.39365 6.44384 6.51576 6.54165 6.57217 6.66159 6.72142 7.10145 7.17550 7.40705 7.56237 7.68220 7.74931 8.03568 8.09027 8.27435 8.50084 8.57794 8.95599 9.52065 10.97703 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.016186 B = 0.003426 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.433295 B = 8170.853116 C = 8453.956875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C 0.214 3.786 4 H 0.034 0.966 5 C -0.548 4.548 6 H 0.053 0.947 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.673 5.673 14 C 0.088 3.912 15 H 0.063 0.937 16 C 0.138 3.862 17 N -0.599 5.599 18 C 0.665 3.335 19 O -0.569 6.569 20 O -0.364 6.364 21 C 0.135 3.865 22 C -0.184 4.184 23 C -0.139 4.139 24 C -0.183 4.183 25 C 0.113 3.887 26 C -0.107 4.107 27 H 0.085 0.915 28 C -0.130 4.130 29 H 0.036 0.964 30 H 0.049 0.951 31 H 0.024 0.976 32 H 0.030 0.970 33 H 0.090 0.910 34 H 0.262 0.738 35 H 0.335 0.665 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.056 0.944 50 H 0.044 0.956 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.753 14.327 -8.521 18.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C 0.106 3.894 4 H 0.052 0.948 5 C -0.587 4.587 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.520 5.520 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.304 5.304 14 C -0.024 4.024 15 H 0.080 0.920 16 C 0.017 3.983 17 N -0.340 5.340 18 C 0.420 3.580 19 O -0.458 6.458 20 O -0.279 6.279 21 C 0.098 3.902 22 C -0.241 4.241 23 C -0.196 4.196 24 C -0.240 4.240 25 C -0.010 4.010 26 C -0.126 4.126 27 H 0.104 0.896 28 C -0.187 4.187 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.108 0.892 34 H 0.072 0.928 35 H 0.153 0.847 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.076 0.924 50 H 0.063 0.937 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.691 14.154 -7.874 18.874 hybrid contribution 2.054 0.296 0.343 2.104 sum -7.636 14.449 -7.531 17.994 Atomic orbital electron populations 1.21724 0.98975 0.98516 1.00424 1.21483 0.92091 0.99098 1.01686 1.19197 0.92850 0.91336 0.85989 0.94846 1.21833 0.92660 1.38516 1.05694 0.92852 1.24925 0.97877 0.94931 0.95708 1.69874 1.34846 1.37947 1.09351 0.86668 0.86104 0.77551 0.78082 1.20803 1.21165 1.20006 1.60851 1.55532 1.03787 1.10246 1.22436 0.95123 0.91017 0.93848 0.91951 1.22289 0.98168 0.77529 1.00358 1.47152 1.47179 1.11682 1.28031 1.17484 0.79197 0.79902 0.81403 1.90897 1.48897 1.80059 1.25989 1.86295 1.65497 1.20706 1.55408 1.22016 0.89064 0.87257 0.91825 1.22521 1.01287 1.04766 0.95541 1.21841 1.03110 0.93595 1.01069 1.22512 0.94619 1.04100 1.02767 1.22080 0.94335 0.98138 0.86442 1.22370 0.99389 0.94007 0.96865 0.89635 1.21622 1.00607 1.00048 0.96431 0.94503 0.93150 0.95673 0.95099 0.89179 0.92830 0.84701 0.90476 0.90465 0.92229 0.91342 0.89207 0.91598 0.90311 0.91550 0.89244 0.91345 0.92316 0.91428 0.91660 0.92445 0.93671 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.85 37.16 0.37 -2.41 16 2 C -0.10 -2.41 5.45 -26.73 -0.15 -2.56 16 3 C 0.21 4.97 1.86 -68.87 -0.13 4.84 16 4 H 0.03 0.88 7.56 -51.93 -0.39 0.49 16 5 C -0.55 -14.08 8.31 -34.44 -0.29 -14.37 16 6 H 0.05 1.35 7.74 -52.48 -0.41 0.95 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.47 11.29 55.43 0.63 -23.85 16 9 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 N -0.67 -12.59 4.57 -98.72 -0.45 -13.04 16 14 C 0.09 1.50 2.91 -65.57 -0.19 1.31 16 15 H 0.06 1.23 7.82 -51.93 -0.41 0.83 16 16 C 0.14 2.40 5.94 -2.53 -0.02 2.38 16 17 N -0.60 -9.52 3.33 -176.29 -0.59 -10.10 16 18 C 0.67 11.08 7.93 54.05 0.43 11.51 16 19 O -0.57 -10.69 12.14 -19.28 -0.23 -10.92 16 20 O -0.36 -5.22 9.49 -40.33 -0.38 -5.60 16 21 C 0.14 1.58 1.13 -90.62 -0.10 1.48 16 22 C -0.18 -2.17 8.37 37.16 0.31 -1.86 16 23 C -0.14 -1.17 8.85 37.15 0.33 -0.84 16 24 C -0.18 -2.06 8.37 37.16 0.31 -1.75 16 25 C 0.11 1.48 6.47 -3.06 -0.02 1.46 16 26 C -0.11 -1.42 3.43 -88.79 -0.30 -1.72 16 27 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 28 C -0.13 -1.58 8.57 37.15 0.32 -1.26 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.95 7.64 -51.93 -0.40 0.56 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 2.35 5.95 -51.93 -0.31 2.04 16 34 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.33 6.13 7.27 -39.29 -0.29 5.84 16 36 H 0.08 1.53 7.98 -51.93 -0.41 1.11 16 37 H 0.08 1.36 7.81 -51.93 -0.41 0.95 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 1.32 5.88 -51.93 -0.31 1.02 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.51 8.14 -51.92 -0.42 0.08 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.09 1.26 5.88 -51.93 -0.31 0.96 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.07 0.80 7.84 -51.93 -0.41 0.39 16 48 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 49 H 0.06 0.76 7.58 -51.93 -0.39 0.36 16 50 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.07 0.89 6.81 -51.93 -0.35 0.54 16 LS Contribution 392.31 15.07 5.91 5.91 Total: -1.00 -28.10 392.31 -8.77 -36.87 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -9.41 Total: 7.12 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 0.78 Total: -2.07 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: -0.41 Total: -47.00 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.62 Total: -16.52 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.10 -8.77 -36.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152255.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.789 kcal (2) G-P(sol) polarization free energy of solvation -28.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds